ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags6g15 |
|---|---|
| Clone Library Name | barley_pub |
>emb|Y13190.1|HVWL5MRNA Hordeum vulgare mRNA for hypothetical protein, partial, clone WL5 Length = 335 Score = 61.9 bits (31), Expect = 1e-07 Identities = 52/57 (91%), Gaps = 2/57 (3%) Strand = Plus / Minus Query: 1 acacctacaccagaggcgcctaaccttagtnctcgntcacctttgagagctccttca 57 ||||||||||||||||| ||||||||| | |||| ||||||||||||||||||||| Sbjct: 180 acacctacaccagaggc-cctaaccttc-ttctcgatcacctttgagagctccttca 126
>ref|XM_473876.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 900 Score = 38.2 bits (19), Expect = 2.0 Identities = 49/57 (85%), Gaps = 2/57 (3%) Strand = Plus / Minus Query: 1 acacctacaccagaggcgcctaaccttagtnctcgntcacctttgagagctccttca 57 ||||| ||||||||||| ||||||||| | |||| ||||||||||||||||||| Sbjct: 881 acaccaacaccagaggc-cctaacctt-cttctcgacaacctttgagagctccttca 827
>emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070C17, complete sequence Length = 160484 Score = 38.2 bits (19), Expect = 2.0 Identities = 49/57 (85%), Gaps = 2/57 (3%) Strand = Plus / Minus Query: 1 acacctacaccagaggcgcctaaccttagtnctcgntcacctttgagagctccttca 57 ||||| ||||||||||| ||||||||| | |||| ||||||||||||||||||| Sbjct: 157269 acaccaacaccagaggc-cctaacctt-cttctcgacaacctttgagagctccttca 157215
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 38.2 bits (19), Expect = 2.0 Identities = 49/57 (85%), Gaps = 2/57 (3%) Strand = Plus / Minus Query: 1 acacctacaccagaggcgcctaaccttagtnctcgntcacctttgagagctccttca 57 ||||| ||||||||||| ||||||||| | |||| ||||||||||||||||||| Sbjct: 31175188 acaccaacaccagaggc-cctaacctt-cttctcgacaacctttgagagctccttca 31175134
>dbj|AK073265.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033025B16, full insert sequence Length = 1364 Score = 38.2 bits (19), Expect = 2.0 Identities = 49/57 (85%), Gaps = 2/57 (3%) Strand = Plus / Minus Query: 1 acacctacaccagaggcgcctaaccttagtnctcgntcacctttgagagctccttca 57 ||||| ||||||||||| ||||||||| | |||| ||||||||||||||||||| Sbjct: 1124 acaccaacaccagaggc-cctaacctt-cttctcgacaacctttgagagctccttca 1070 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 177,593 Number of Sequences: 3902068 Number of extensions: 177593 Number of successful extensions: 8795 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 8783 Number of HSP's gapped (non-prelim): 11 length of query: 57 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 36 effective length of database: 17,151,101,840 effective search space: 617439666240 effective search space used: 617439666240 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)
