ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags6g12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_195033.1| Oryza sativa (japonica cultivar-group) hypothet... 56 1e-04
2gb|AC146079.2| Pan troglodytes BAC clone RP43-46C10 from 7, comp... 44 0.52
3gb|AC004741.2| Homo sapiens PAC clone RP4-754J18 from 7, complet... 44 0.52
4gb|AC131375.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.52
5gb|BC076438.1| Danio rerio inositol(myo)-1(or 4)-monophosphatase... 44 0.52
6ref|NM_001002745.1| Danio rerio inositol(myo)-1(or 4)-monophosph... 44 0.52
7gb|AC104511.5| Drosophila melanogaster X BAC RP98-39D14 (Roswell... 44 0.52
8gb|AC023685.4| Drosophila melanogaster 3L BAC RP98-20N12 (Roswel... 44 0.52
9ref|XM_696311.1| PREDICTED: Danio rerio hypothetical protein LOC... 44 0.52
10emb|BX248497.11| Zebrafish DNA sequence from clone DKEY-181M9 in... 44 0.52
11dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.52
12gb|AE003491.4| Drosophila melanogaster chromosome X, section 43 ... 44 0.52
13gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.52
14ref|NM_139077.1| Danio rerio NIMA (never in mitosis gene a)-rela... 42 2.1
15gb|AY558077.1| Saccharomyces cerevisiae clone FLH113455.01X YBL0... 42 2.1
16emb|X79489.1|SCDNCH2 S.cerevisiae genomic DNA, chromosome II fro... 42 2.1
17emb|Z35858.1|SCYBL097W S.cerevisiae chromosome II reading frame ... 42 2.1
18emb|CR392353.6| Zebrafish DNA sequence from clone CH211-9D19 in ... 42 2.1
19emb|AL671672.4| Mouse DNA sequence from clone RP23-461E2 on chro... 42 2.1
20gb|AF407580.1| Danio rerio NIMA-related kinase 8 (nek8) mRNA, co... 42 2.1
21gb|AC124992.14| Mus musculus chromosome 10, clone RP23-149L10, c... 40 8.2
22gb|AC125087.2| Mus musculus BAC clone RP24-143E18 from chromosom... 40 8.2
23gb|AC124685.5| Mus musculus BAC clone RP24-385O22 from chromosom... 40 8.2
24emb|AL138830.20| Human DNA sequence from clone RP3-399L15 on chr... 40 8.2
25gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 40 8.2
26gb|AC157572.4| Mus musculus BAC clone RP23-79O10 from chromosome... 40 8.2
27gb|AC019193.7| Homo sapiens BAC clone RP11-335L23 from 4, comple... 40 8.2
28gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome 40 8.2
29gb|AC012147.7|AC012147 Mus musculus, clone RP23-191A4, complete ... 40 8.2
30gb|AC144600.3| Didelphis virginiana clone LB3-100O6, complete se... 40 8.2
31gb|DP000023.1| Didelphis virginiana target 1 genomic scaffold 40 8.2
32emb|AL928689.7| Mouse DNA sequence from clone RP23-35P3 on chrom... 40 8.2

>ref|NM_195033.1| Oryza sativa (japonica cultivar-group) hypothetical protein
            (OSJNAb0015J03.11), mRNA
          Length = 2187

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 61/72 (84%)
 Strand = Plus / Minus

                                                                        
Query: 511  gaacacgatttgtaggcgggatgtatccagcatgaggttccaggtcacgagcatttggtt 570
            |||||||| ||| ||| |||||| |||||||||||||| |||  ||| | | || |||||
Sbjct: 1918 gaacacgacttgaaggagggatgaatccagcatgaggtgccaaatcatgggaatgtggtt 1859

                        
Query: 571  tagatctggaag 582
            ||||||||||||
Sbjct: 1858 tagatctggaag 1847



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>gb|AC146079.2| Pan troglodytes BAC clone RP43-46C10 from 7, complete sequence
          Length = 186437

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 401   aactgctatttctctagcatga 422
             ||||||||||||||||||||||
Sbjct: 96398 aactgctatttctctagcatga 96419



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>gb|AC004741.2| Homo sapiens PAC clone RP4-754J18 from 7, complete sequence
          Length = 112242

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 401   aactgctatttctctagcatga 422
             ||||||||||||||||||||||
Sbjct: 68044 aactgctatttctctagcatga 68065



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>gb|AC131375.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNAb0015J03, complete sequence
          Length = 165933

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 511   gaacacgatttgtaggcgggatgtatccagcatgaggt 548
             |||||||| ||| ||| |||||| ||||||||||||||
Sbjct: 78225 gaacacgacttgaaggagggatgaatccagcatgaggt 78188



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>gb|BC076438.1| Danio rerio inositol(myo)-1(or 4)-monophosphatase 1, mRNA (cDNA
           clone MGC:100926 IMAGE:7145589), complete cds
          Length = 1310

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 409 tttctctagcatgaggaagatc 430
           ||||||||||||||||||||||
Sbjct: 774 tttctctagcatgaggaagatc 795



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>ref|NM_001002745.1| Danio rerio inositol(myo)-1(or 4)-monophosphatase 1 (impa1), mRNA
          Length = 1310

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 409 tttctctagcatgaggaagatc 430
           ||||||||||||||||||||||
Sbjct: 774 tttctctagcatgaggaagatc 795



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>gb|AC104511.5| Drosophila melanogaster X BAC RP98-39D14 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 166000

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 497   atttgcaggtgcacgaacacga 518
             ||||||||||||||||||||||
Sbjct: 44363 atttgcaggtgcacgaacacga 44384



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>gb|AC023685.4| Drosophila melanogaster 3L BAC RP98-20N12 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 167926

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 497   atttgcaggtgcacgaacacga 518
             ||||||||||||||||||||||
Sbjct: 23514 atttgcaggtgcacgaacacga 23493



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>ref|XM_696311.1| PREDICTED: Danio rerio hypothetical protein LOC554418 (LOC554418),
           mRNA
          Length = 1258

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 409 tttctctagcatgaggaagatc 430
           ||||||||||||||||||||||
Sbjct: 753 tttctctagcatgaggaagatc 774



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>emb|BX248497.11| Zebrafish DNA sequence from clone DKEY-181M9 in linkage group 2, complete
              sequence
          Length = 145610

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 409    tttctctagcatgaggaagatc 430
              ||||||||||||||||||||||
Sbjct: 105770 tttctctagcatgaggaagatc 105791



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                     
Query: 511     gaacacgatttgtaggcgggatgtatccagcatgaggt 548
               |||||||| ||| ||| |||||| ||||||||||||||
Sbjct: 4310684 gaacacgacttgaaggagggatgaatccagcatgaggt 4310647



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>gb|AE003491.4| Drosophila melanogaster chromosome X, section 43 of 74 of the complete
             sequence
          Length = 332030

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 497   atttgcaggtgcacgaacacga 518
             ||||||||||||||||||||||
Sbjct: 80199 atttgcaggtgcacgaacacga 80178



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                     
Query: 511     gaacacgatttgtaggcgggatgtatccagcatgaggt 548
               |||||||| ||| ||| |||||| ||||||||||||||
Sbjct: 4311505 gaacacgacttgaaggagggatgaatccagcatgaggt 4311468



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>ref|NM_139077.1| Danio rerio NIMA (never in mitosis gene a)-related kinase 8 (nek8),
            mRNA
          Length = 2816

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 206  ttctgtatttgcagtattaca 226
            |||||||||||||||||||||
Sbjct: 2606 ttctgtatttgcagtattaca 2626



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>gb|AY558077.1| Saccharomyces cerevisiae clone FLH113455.01X YBL097W gene, complete
            cds
          Length = 2188

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 254  tttttgtcagtagtatctcct 274
            |||||||||||||||||||||
Sbjct: 1241 tttttgtcagtagtatctcct 1221



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>emb|X79489.1|SCDNCH2 S.cerevisiae genomic DNA, chromosome II from Y element to ILS1 gene
          Length = 78600

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 254   tttttgtcagtagtatctcct 274
             |||||||||||||||||||||
Sbjct: 36184 tttttgtcagtagtatctcct 36164



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>emb|Z35858.1|SCYBL097W S.cerevisiae chromosome II reading frame ORF YBL097w
          Length = 2654

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 254  tttttgtcagtagtatctcct 274
            |||||||||||||||||||||
Sbjct: 1627 tttttgtcagtagtatctcct 1607



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>emb|CR392353.6| Zebrafish DNA sequence from clone CH211-9D19 in linkage group 11,
             complete sequence
          Length = 183599

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 206   ttctgtatttgcagtattaca 226
             |||||||||||||||||||||
Sbjct: 34488 ttctgtatttgcagtattaca 34508



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>emb|AL671672.4| Mouse DNA sequence from clone RP23-461E2 on chromosome 4, complete
             sequence
          Length = 191255

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 399   ggaactgctatttctctagca 419
             |||||||||||||||||||||
Sbjct: 90527 ggaactgctatttctctagca 90507



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>gb|AF407580.1| Danio rerio NIMA-related kinase 8 (nek8) mRNA, complete cds
          Length = 2816

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 206  ttctgtatttgcagtattaca 226
            |||||||||||||||||||||
Sbjct: 2606 ttctgtatttgcagtattaca 2626



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>gb|AC124992.14| Mus musculus chromosome 10, clone RP23-149L10, complete sequence
          Length = 194736

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 241    attggcactaggatttttgt 260
              ||||||||||||||||||||
Sbjct: 101535 attggcactaggatttttgt 101516



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>gb|AC125087.2| Mus musculus BAC clone RP24-143E18 from chromosome 14, complete sequence
          Length = 180794

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 293    agttcctgggtagtggtaag 312
              ||||||||||||||||||||
Sbjct: 149900 agttcctgggtagtggtaag 149919



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>gb|AC124685.5| Mus musculus BAC clone RP24-385O22 from chromosome 2, complete sequence
          Length = 174583

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 235   catggaattggcactaggat 254
             ||||||||||||||||||||
Sbjct: 62981 catggaattggcactaggat 63000



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>emb|AL138830.20| Human DNA sequence from clone RP3-399L15 on chromosome 6q21-22.2 Contains
              2 putative novel genes, complete sequence
          Length = 141924

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 102    aacataaattgaaaacctaa 121
              ||||||||||||||||||||
Sbjct: 111784 aacataaattgaaaacctaa 111803



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>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 451     atggtgcgcttctcggctga 470
               ||||||||||||||||||||
Sbjct: 3304700 atggtgcgcttctcggctga 3304719



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>gb|AC157572.4| Mus musculus BAC clone RP23-79O10 from chromosome 14, complete sequence
          Length = 242759

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 293    agttcctgggtagtggtaag 312
              ||||||||||||||||||||
Sbjct: 204677 agttcctgggtagtggtaag 204658



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>gb|AC019193.7| Homo sapiens BAC clone RP11-335L23 from 4, complete sequence
          Length = 177720

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 201    aaacgttctgtatttgcagt 220
              ||||||||||||||||||||
Sbjct: 134158 aaacgttctgtatttgcagt 134139



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>gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome
          Length = 3544738

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 499     ttgcaggtgcacgaacacga 518
               ||||||||||||||||||||
Sbjct: 1064409 ttgcaggtgcacgaacacga 1064428



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>gb|AC012147.7|AC012147 Mus musculus, clone RP23-191A4, complete sequence
          Length = 217034

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 421    gaggaagatcatcaatgtga 440
              ||||||||||||||||||||
Sbjct: 121058 gaggaagatcatcaatgtga 121077



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>gb|AC144600.3| Didelphis virginiana clone LB3-100O6, complete sequence
          Length = 182571

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 465    ggctgatcatacacataggt 484
              ||||||||||||||||||||
Sbjct: 143766 ggctgatcatacacataggt 143747



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>gb|DP000023.1| Didelphis virginiana target 1 genomic scaffold
          Length = 1751794

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 465    ggctgatcatacacataggt 484
              ||||||||||||||||||||
Sbjct: 986852 ggctgatcatacacataggt 986833



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>emb|AL928689.7| Mouse DNA sequence from clone RP23-35P3 on chromosome 2, complete
              sequence
          Length = 182529

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 235    catggaattggcactaggat 254
              ||||||||||||||||||||
Sbjct: 172432 catggaattggcactaggat 172451


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,761,972
Number of Sequences: 3902068
Number of extensions: 4761972
Number of successful extensions: 80971
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80849
Number of HSP's gapped (non-prelim): 122
length of query: 599
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 576
effective length of database: 17,143,297,704
effective search space: 9874539477504
effective search space used: 9874539477504
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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