ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags6g11 |
|---|---|
| Clone Library Name | barley_pub |
>Y2416_ARATH (O22969) Protein At2g34160| Length = 130 Score = 153 bits (387), Expect = 3e-37 Identities = 79/91 (86%), Positives = 83/91 (91%) Frame = -2 Query: 514 NRIQVSNTKKPLFFYVNLAKRYMQQHGDVELSALGMAIATVVTVAEILKNNGLAVEKKIR 335 NRIQVSNTKKPLFFYVNLAKRYMQQ+ DVELSALGMAIATVVTV EILKNNG AVEKKI Sbjct: 21 NRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTVTEILKNNGFAVEKKIM 80 Query: 334 TSTVEINDESRGRPFQKAKIEIELGKSEKFD 242 TSTV+I D++RGRP QKAKIEI L KSEKFD Sbjct: 81 TSTVDIKDDARGRPVQKAKIEITLVKSEKFD 111
>ALBA_METJA (Q57665) DNA/RNA-binding protein Alba| Length = 87 Score = 35.0 bits (79), Expect = 0.13 Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 4/82 (4%) Frame = -2 Query: 490 KKPLFFYVNLAKRYMQQHGDVELSALGMAIATVVTVAEILKNNGLAVEKKIRTSTVEIND 311 KKP+ YV + + +V + A G AI V VAE+++N + K I+ +EI Sbjct: 9 KKPVMNYVVAVLTQLTSNDEVIIKARGKAINKAVDVAEMIRNRFI---KDIKIKKIEIGT 65 Query: 310 ES----RGRPFQKAKIEIELGK 257 + GR + IEI L K Sbjct: 66 DKVKNPDGREVNVSTIEIVLAK 87
>ALBA_NANEQ (P60851) DNA/RNA-binding protein Alba| Length = 90 Score = 33.5 bits (75), Expect = 0.38 Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 4/82 (4%) Frame = -2 Query: 490 KKPLFFYVN-LAKRYMQQHGDVELSALGMAIATVVTVAEILKNNGLAVE---KKIRTSTV 323 KKPL YV + ++MQ +V + A G I+ V VAE ++ LA + I+ + Sbjct: 8 KKPLTNYVMAVVMQFMQGANEVVIKARGRNISRAVDVAERVRKRFLAGQVDVGDIKIDSE 67 Query: 322 EINDESRGRPFQKAKIEIELGK 257 E+ D + G+ + IEI+L K Sbjct: 68 EVVDPATGQKRTVSTIEIKLVK 89
>ALBA2_METKA (Q8TWE6) DNA/RNA-binding protein Alba 2| Length = 93 Score = 32.7 bits (73), Expect = 0.66 Identities = 34/89 (38%), Positives = 42/89 (47%), Gaps = 3/89 (3%) Frame = -2 Query: 514 NRIQVSNTKKPLFFYVNLAKRYMQQHGD-VELSALGMAIATVVTVAEILKNNGL-AVE-K 344 N I V N KP+ YV + D V+L A G AI+ V VAE ++NN + VE K Sbjct: 5 NVIYVGN--KPVTNYVLAVMTQFSEGADEVKLVARGRAISRAVDVAEFIRNNVMPEVEVK 62 Query: 343 KIRTSTVEINDESRGRPFQKAKIEIELGK 257 I T EI E G + I I L K Sbjct: 63 DIEIGTEEIETE-EGDTISVSTIAITLAK 90
>UTP10_YEAST (P42945) U3 small nucleolar RNA-associated protein 10 (U3| snoRNA-associated protein 10) Length = 1769 Score = 29.6 bits (65), Expect = 5.6 Identities = 11/37 (29%), Positives = 24/37 (64%) Frame = -2 Query: 394 VVTVAEILKNNGLAVEKKIRTSTVEINDESRGRPFQK 284 V +AE+L+++ +E+++RT V++ + G PF + Sbjct: 1730 VPVIAELLEDDDEEIEREVRTGLVKVVENVLGEPFDR 1766
>RK24_TOBAC (Q02764) 50S ribosomal protein L24, chloroplast precursor (CL24)| Length = 187 Score = 29.3 bits (64), Expect = 7.3 Identities = 18/61 (29%), Positives = 24/61 (39%) Frame = -2 Query: 436 GDVELSALGMAIATVVTVAEILKNNGLAVEKKIRTSTVEINDESRGRPFQKAKIEIELGK 257 GD G V + EI+K+N V K + T + S P Q KIE + Sbjct: 67 GDTVKIISGHDKGKVGEITEIIKHNSKVVVKDVNLKTKHVKSRSEDEPGQIVKIEAPIHS 126 Query: 256 S 254 S Sbjct: 127 S 127
>ALBA2_SULTO (Q971T6) DNA/RNA-binding protein Alba 2| Length = 90 Score = 29.3 bits (64), Expect = 7.3 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 3/60 (5%) Frame = -2 Query: 514 NRIQVSNTKKPLFFYVNLAKRYMQQHGDVELSALGMAIATVVTVAEILKN---NGLAVEK 344 N I +S TK+ + +++ + Q + +VEL +G +I V V LK+ +G+ +EK Sbjct: 7 NEILISRTKRVEDYVLDVIVMFNQGYDEVELKGVGNSIYKAVEVYNQLKDRLGDGIILEK 66
>HIS1_PSEU2 (Q4ZNV8) ATP phosphoribosyltransferase (EC 2.4.2.17) (ATP-PRTase)| (ATP-PRT) Length = 211 Score = 28.9 bits (63), Expect = 9.5 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 13/80 (16%) Frame = -2 Query: 472 YVNLAKRY----------MQQHGDVELSAL-GMA--IATVVTVAEILKNNGLAVEKKIRT 332 +VN+AKRY ++ +G +EL+ L G+A I VV L+ NGL ++ I T Sbjct: 116 FVNVAKRYYAEQGRQVDIIKLYGSMELAPLIGLADKIIDVVDTGNTLRANGLEPQELIAT 175 Query: 331 STVEINDESRGRPFQKAKIE 272 + + Q A+I+ Sbjct: 176 ISSRLVVNKASMKMQHARIQ 195
>HIS1_PSESM (Q87WV4) ATP phosphoribosyltransferase (EC 2.4.2.17) (ATP-PRTase)| (ATP-PRT) Length = 211 Score = 28.9 bits (63), Expect = 9.5 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 13/80 (16%) Frame = -2 Query: 472 YVNLAKRY----------MQQHGDVELSAL-GMA--IATVVTVAEILKNNGLAVEKKIRT 332 +VN+AKRY ++ +G +EL+ L G+A I VV L+ NGL ++ I T Sbjct: 116 FVNVAKRYYAEQGRQVDIIKLYGSMELAPLIGLADKIIDVVDTGNTLRANGLEPQELIAT 175 Query: 331 STVEINDESRGRPFQKAKIE 272 + + Q A+I+ Sbjct: 176 ISSRLVVNKASMKMQHARIQ 195
>HIS1_PSEPF (Q3KHZ3) ATP phosphoribosyltransferase (EC 2.4.2.17) (ATP-PRTase)| (ATP-PRT) Length = 211 Score = 28.9 bits (63), Expect = 9.5 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 13/80 (16%) Frame = -2 Query: 472 YVNLAKRY----------MQQHGDVELSAL-GMA--IATVVTVAEILKNNGLAVEKKIRT 332 +VN+AKRY ++ +G +EL+ L G+A I VV L+ NGL ++ I T Sbjct: 116 FVNVAKRYYAEQGRQVDIIKLYGSMELAPLIGLADKIIDVVDTGNTLRANGLEPQELIAT 175 Query: 331 STVEINDESRGRPFQKAKIE 272 + + Q A+I+ Sbjct: 176 ISSRLVVNKASMKMQHARIQ 195
>HIS1_PSEF5 (Q4KI74) ATP phosphoribosyltransferase (EC 2.4.2.17) (ATP-PRTase)| (ATP-PRT) Length = 211 Score = 28.9 bits (63), Expect = 9.5 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 13/80 (16%) Frame = -2 Query: 472 YVNLAKRY----------MQQHGDVELSAL-GMA--IATVVTVAEILKNNGLAVEKKIRT 332 +VN+AKRY ++ +G +EL+ L G+A I VV L+ NGL ++ I T Sbjct: 116 FVNVAKRYYAEQGRQVDIIKLYGSMELAPLIGLADKIIDVVDTGNTLRANGLEPQELIAT 175 Query: 331 STVEINDESRGRPFQKAKIE 272 + + Q A+I+ Sbjct: 176 ISSRLVVNKASMKMQHARIQ 195
>HIS1_PSE14 (Q48EC8) ATP phosphoribosyltransferase (EC 2.4.2.17) (ATP-PRTase)| (ATP-PRT) Length = 211 Score = 28.9 bits (63), Expect = 9.5 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 13/80 (16%) Frame = -2 Query: 472 YVNLAKRY----------MQQHGDVELSAL-GMA--IATVVTVAEILKNNGLAVEKKIRT 332 +VN+AKRY ++ +G +EL+ L G+A I VV L+ NGL ++ I T Sbjct: 116 FVNVAKRYYAEQGRQVDIIKLYGSMELAPLIGLADKIIDVVDTGNTLRANGLEPQELIAT 175 Query: 331 STVEINDESRGRPFQKAKIE 272 + + Q A+I+ Sbjct: 176 ISSRLVVNKASMKMQHARIQ 195 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,574,455 Number of Sequences: 219361 Number of extensions: 1033780 Number of successful extensions: 3499 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 3391 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3493 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4200495993 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
