ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags6f11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_188696.1| Oryza sativa (japonica cultivar-group), predic... 377 e-101
2dbj|AK111838.1| Oryza sativa (japonica cultivar-group) cDNA clon... 377 e-101
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 155 2e-34
4dbj|AP002855.2| Oryza sativa (japonica cultivar-group) genomic D... 155 2e-34
5gb|AY109529.1| Zea mays CL21411_1 mRNA sequence 151 3e-33
6ref|NM_118987.3| Arabidopsis thaliana nucleotide binding AT4G284... 66 1e-07
7gb|AY143901.1| Arabidopsis thaliana At4g28450/F20O9_130 mRNA, co... 66 1e-07
8gb|AY045624.1| Arabidopsis thaliana AT4g28450/F20O9_130 mRNA, co... 66 1e-07
9gb|AF372943.1|AF372943 Arabidopsis thaliana AT4g28450/F20O9_130 ... 66 1e-07
10emb|BX826972.1|CNS0A45D Arabidopsis thaliana Full-length cDNA Co... 66 1e-07
11emb|BX828093.1|CNS0A3TO Arabidopsis thaliana Full-length cDNA Co... 66 1e-07
12gb|AY062623.1| Arabidopsis thaliana SOF1 protein-like protein (F... 58 4e-05
13emb|BX293553.4| Zebrafish DNA sequence from clone CH211-256J2 in... 50 0.009
14emb|BX813621.1|CNS0ADIN Arabidopsis thaliana Full-length cDNA Co... 44 0.55
15gb|AC163449.2| Mus musculus chromosome 3, clone RP23-193H21, com... 42 2.2
16gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 42 2.2
17gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 42 2.2
18ref|XM_545016.2| PREDICTED: Canis familiaris similar to small in... 42 2.2
19gb|AC134894.4| Mus musculus BAC clone RP24-260P1 from chromosome... 42 2.2
20gb|AC131726.3| Mus musculus BAC clone RP23-132P9 from 3, complet... 42 2.2
21gb|AC073486.5| Homo sapiens BAC clone RP11-807H17 from 7, comple... 42 2.2
22gb|AC113527.8| Mus musculus chromosome 9, clone RP23-314E23, com... 42 2.2
23emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 42 2.2
24gb|BC103049.1| Bos taurus similar to small inducible cytokine su... 42 2.2
25ref|NM_001035018.1| Bos taurus similar to small inducible cytoki... 42 2.2
26gb|AC004403.1|AC004403 Homo sapiens Cosmid g5129z070, complete s... 42 2.2
27gb|AC160111.2| Mus musculus BAC clone RP24-144L16 from chromosom... 42 2.2
28ref|NM_025114.2| Homo sapiens centrosomal protein 290kDa (CEP290... 40 8.5
29gb|AC162901.4| Mus musculus BAC clone RP23-417K5 from chromosome... 40 8.5
30gb|AC133451.14| Mus musculus chromosome 19, clone RP24-91H12, co... 40 8.5
31ref|XM_848222.1| PREDICTED: Canis familiaris similar to Multisyn... 40 8.5
32gb|AC121777.3| Mus musculus BAC clone RP23-359A23 from chromosom... 40 8.5
33gb|DQ109808.1| Homo sapiens nephrocystin-6 (CEP290) mRNA, comple... 40 8.5
34gb|BC035136.2| Homo sapiens chromosome 12 open reading frame 29,... 40 8.5
35gb|BC092422.1| Homo sapiens chromosome 12 open reading frame 29,... 40 8.5
36gb|CP000316.1| Polaromonas sp. JS666, complete genome 40 8.5
37emb|AL138763.10| Human DNA sequence from clone RP11-225E2 on chr... 40 8.5
38gb|AC155807.3| Mus musculus BAC clone RP24-303N21 from chromosom... 40 8.5
39emb|AL161572.2|ATCHRIV68 Arabidopsis thaliana DNA chromosome 4, ... 40 8.5
40emb|AL021749.1|ATF20O9 Arabidopsis thaliana DNA chromosome 4, BA... 40 8.5
41emb|CR936776.1| Homo sapiens mRNA; cDNA DKFZp686P1154 (from clon... 40 8.5
42gb|AC087865.8| Homo sapiens 12 BAC RP11-66D24 (Roswell Park Canc... 40 8.5
43emb|CR857193.1| Pongo pygmaeus mRNA; cDNA DKFZp469F1722 (from cl... 40 8.5
44emb|BX648026.1|HSM808172 Homo sapiens mRNA; cDNA DKFZp779K0447 (... 40 8.5
45emb|BX640968.1|HSM807122 Homo sapiens mRNA; cDNA DKFZp686L04169 ... 40 8.5
46dbj|AK095477.1| Homo sapiens cDNA FLJ38158 fis, clone DFNES2001091 40 8.5
47gb|AC091516.8| Homo sapiens 12q BAC RP11-474L23 (Roswell Park Ca... 40 8.5
48ref|NM_001009894.2| Homo sapiens chromosome 12 open reading fram... 40 8.5
49tpg|BK005587.1| TPA: TPA_exp: Homo sapiens centrosome protein Ce... 40 8.5
50dbj|AK043456.1| Mus musculus 7 days neonate cerebellum cDNA, RIK... 40 8.5
51dbj|AB002371.1| Homo sapiens mRNA for KIAA0373 gene, partial cds 40 8.5
52emb|AL954171.10| Zebrafish DNA sequence from clone CH211-284B7 i... 40 8.5
53emb|AL132986.4|CNS01DTU Human chromosome 14 DNA sequence BAC R-7... 40 8.5
54emb|AL117694.5|CNS01DRQ Human chromosome 14 DNA sequence BAC R-2... 40 8.5
55emb|BX537868.1|HSM805972 Homo sapiens mRNA; cDNA DKFZp313K0436 (... 40 8.5
56emb|AL049382.1|HSM800167 Homo sapiens mRNA; cDNA DKFZp586K1318 (... 40 8.5 
>ref|NM_188696.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1359

 Score =  377 bits (190), Expect = e-101
 Identities = 325/370 (87%)
 Strand = Plus / Minus

                                                                        
Query: 248  tgctccctggagcactgtgcgctcgccttctttcttctttccggctttctgcttcaatca 307
            ||||||| || ||||||||||| ||||| ||||||||||| ||| |||||||||||||||
Sbjct: 1309 tgctcccgggggcactgtgcgcacgcctcctttcttctttacggttttctgcttcaatca 1250

                                                                        
Query: 308  tggcacgccgtatcttgcctgccttgtagatcggcttgggtacgtgcttatgtttgacaa 367
            | |  |||| ||  ||| | ||||||||||| ||||| |||| |||| ||||  | ||||
Sbjct: 1249 tcgttcgccttaagttggccgccttgtagattggcttaggtaagtgcctatgcctcacaa 1190

                                                                        
Query: 368  tccgcctgatttctggaaggtgaccataccgcagcttgacagcatctagatattcttgct 427
            ||||| ||| ||| ||||||||   |||||||  ||||||||||||||| |||||||| |
Sbjct: 1189 tccgcttgacttcgggaaggtgcttataccgctccttgacagcatctaggtattcttgtt 1130

                                                                        
Query: 428  ttttgcgttcccttggaagaacaactcccaattgttctgaagcattggacttccacagtc 487
            || ||||||| |||||||||| ||||||||| ||||||||||| |||||||||||||| |
Sbjct: 1129 ttctgcgttctcttggaagaagaactcccaactgttctgaagctttggacttccacagcc 1070

                                                                        
Query: 488  gaagatttgtatcatcactgccagaaactagataggtcccatcatatgtgtatttcacac 547
            ||||||| |||||||||||||||||||| | |||||| |||||||| |||||||||||||
Sbjct: 1069 gaagattcgtatcatcactgccagaaaccaaataggttccatcataggtgtatttcacac 1010

                                                                        
Query: 548  aaaacaccctttgcatcctcttagtatggtatatctccctgctatgatcaccaatataat 607
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 1009 aaaacaccctttgcatcctcttagtatggtatatctccctgctatgatcaccattatatt 950

                      
Query: 608  tgaagatccg 617
             |||||||||
Sbjct: 949  ggaagatccg 940
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>dbj|AK111838.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023136A09, full
            insert sequence
          Length = 2073

 Score =  377 bits (190), Expect = e-101
 Identities = 325/370 (87%)
 Strand = Plus / Minus

                                                                        
Query: 248  tgctccctggagcactgtgcgctcgccttctttcttctttccggctttctgcttcaatca 307
            ||||||| || ||||||||||| ||||| ||||||||||| ||| |||||||||||||||
Sbjct: 1689 tgctcccgggggcactgtgcgcacgcctcctttcttctttacggttttctgcttcaatca 1630

                                                                        
Query: 308  tggcacgccgtatcttgcctgccttgtagatcggcttgggtacgtgcttatgtttgacaa 367
            | |  |||| ||  ||| | ||||||||||| ||||| |||| |||| ||||  | ||||
Sbjct: 1629 tcgttcgccttaagttggccgccttgtagattggcttaggtaagtgcctatgcctcacaa 1570

                                                                        
Query: 368  tccgcctgatttctggaaggtgaccataccgcagcttgacagcatctagatattcttgct 427
            ||||| ||| ||| ||||||||   |||||||  ||||||||||||||| |||||||| |
Sbjct: 1569 tccgcttgacttcgggaaggtgcttataccgctccttgacagcatctaggtattcttgtt 1510

                                                                        
Query: 428  ttttgcgttcccttggaagaacaactcccaattgttctgaagcattggacttccacagtc 487
            || ||||||| |||||||||| ||||||||| ||||||||||| |||||||||||||| |
Sbjct: 1509 ttctgcgttctcttggaagaagaactcccaactgttctgaagctttggacttccacagcc 1450

                                                                        
Query: 488  gaagatttgtatcatcactgccagaaactagataggtcccatcatatgtgtatttcacac 547
            ||||||| |||||||||||||||||||| | |||||| |||||||| |||||||||||||
Sbjct: 1449 gaagattcgtatcatcactgccagaaaccaaataggttccatcataggtgtatttcacac 1390

                                                                        
Query: 548  aaaacaccctttgcatcctcttagtatggtatatctccctgctatgatcaccaatataat 607
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 1389 aaaacaccctttgcatcctcttagtatggtatatctccctgctatgatcaccattatatt 1330

                      
Query: 608  tgaagatccg 617
             |||||||||
Sbjct: 1329 ggaagatccg 1320
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  155 bits (78), Expect = 2e-34
 Identities = 102/110 (92%)
 Strand = Plus / Minus

                                                                           
Query: 448     acaactcccaattgttctgaagcattggacttccacagtcgaagatttgtatcatcactg 507
               ||||||||||| ||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct: 7683362 acaactcccaactgttctgaagctttggacttccacagccgaagattcgtatcatcactg 7683303

                                                                 
Query: 508     ccagaaactagataggtcccatcatatgtgtatttcacacaaaacaccct 557
               |||||||| | |||||| |||||||| |||||||||||||||||||||||
Sbjct: 7683302 ccagaaaccaaataggttccatcataggtgtatttcacacaaaacaccct 7683253



 Score =  101 bits (51), Expect = 3e-18
 Identities = 60/63 (95%)
 Strand = Plus / Minus

                                                                           
Query: 555     cctttgcatcctcttagtatggtatatctccctgctatgatcaccaatataattgaagat 614
               |||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||
Sbjct: 7683021 cctttgcatcctcttagtatggtatatctccctgctatgatcaccattatattggaagat 7682962

                  
Query: 615     ccg 617
               |||
Sbjct: 7682961 ccg 7682959



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 94/112 (83%)
 Strand = Plus / Minus

                                                                           
Query: 248     tgctccctggagcactgtgcgctcgccttctttcttctttccggctttctgcttcaatca 307
               ||||||| || ||||||||||| ||||| ||||||||||| ||| |||||||||||||||
Sbjct: 7684465 tgctcccgggggcactgtgcgcacgcctcctttcttctttacggttttctgcttcaatca 7684406

                                                                   
Query: 308     tggcacgccgtatcttgcctgccttgtagatcggcttgggtacgtgcttatg 359
               | |  |||| ||  ||| | ||||||||||| ||||| |||| |||| ||||
Sbjct: 7684405 tcgttcgccttaagttggccgccttgtagattggcttaggtaagtgcctatg 7684354



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 73/85 (85%)
 Strand = Plus / Minus

                                                                           
Query: 364     acaatccgcctgatttctggaaggtgaccataccgcagcttgacagcatctagatattct 423
               ||||||||| ||| ||| ||||||||   |||||||  ||||||||||||||| ||||||
Sbjct: 7684227 acaatccgcttgacttcgggaaggtgcttataccgctccttgacagcatctaggtattct 7684168

                                        
Query: 424     tgctttttgcgttcccttggaagaa 448
               || ||| ||||||| ||||||||||
Sbjct: 7684167 tgttttctgcgttctcttggaagaa 7684143
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>dbj|AP002855.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0086P08
          Length = 145312

 Score =  155 bits (78), Expect = 2e-34
 Identities = 102/110 (92%)
 Strand = Plus / Minus

                                                                         
Query: 448   acaactcccaattgttctgaagcattggacttccacagtcgaagatttgtatcatcactg 507
             ||||||||||| ||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct: 93938 acaactcccaactgttctgaagctttggacttccacagccgaagattcgtatcatcactg 93879

                                                               
Query: 508   ccagaaactagataggtcccatcatatgtgtatttcacacaaaacaccct 557
             |||||||| | |||||| |||||||| |||||||||||||||||||||||
Sbjct: 93878 ccagaaaccaaataggttccatcataggtgtatttcacacaaaacaccct 93829



 Score =  101 bits (51), Expect = 3e-18
 Identities = 60/63 (95%)
 Strand = Plus / Minus

                                                                         
Query: 555   cctttgcatcctcttagtatggtatatctccctgctatgatcaccaatataattgaagat 614
             |||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||
Sbjct: 93597 cctttgcatcctcttagtatggtatatctccctgctatgatcaccattatattggaagat 93538

                
Query: 615   ccg 617
             |||
Sbjct: 93537 ccg 93535



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 94/112 (83%)
 Strand = Plus / Minus

                                                                         
Query: 248   tgctccctggagcactgtgcgctcgccttctttcttctttccggctttctgcttcaatca 307
             ||||||| || ||||||||||| ||||| ||||||||||| ||| |||||||||||||||
Sbjct: 95041 tgctcccgggggcactgtgcgcacgcctcctttcttctttacggttttctgcttcaatca 94982

                                                                 
Query: 308   tggcacgccgtatcttgcctgccttgtagatcggcttgggtacgtgcttatg 359
             | |  |||| ||  ||| | ||||||||||| ||||| |||| |||| ||||
Sbjct: 94981 tcgttcgccttaagttggccgccttgtagattggcttaggtaagtgcctatg 94930



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 73/85 (85%)
 Strand = Plus / Minus

                                                                         
Query: 364   acaatccgcctgatttctggaaggtgaccataccgcagcttgacagcatctagatattct 423
             ||||||||| ||| ||| ||||||||   |||||||  ||||||||||||||| ||||||
Sbjct: 94803 acaatccgcttgacttcgggaaggtgcttataccgctccttgacagcatctaggtattct 94744

                                      
Query: 424   tgctttttgcgttcccttggaagaa 448
             || ||| ||||||| ||||||||||
Sbjct: 94743 tgttttctgcgttctcttggaagaa 94719
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>gb|AY109529.1| Zea mays CL21411_1 mRNA sequence
          Length = 947

 Score =  151 bits (76), Expect = 3e-33
 Identities = 118/132 (89%)
 Strand = Plus / Plus

                                                                       
Query: 477 cttccacagtcgaagatttgtatcatcactgccagaaactagataggtcccatcatatgt 536
           ||||||||| ||||||| |||||||||||||||||| |||| ||||||||||||||| ||
Sbjct: 504 cttccacagacgaagatgtgtatcatcactgccagagactaaataggtcccatcataggt 563

                                                                       
Query: 537 gtatttcacacaaaacaccctttgcatcctcttagtatggtatatctccctgctatgatc 596
           ||| ||||||||||||||||||||||||||||| || ||||| ||||| ||||| || ||
Sbjct: 564 gtacttcacacaaaacaccctttgcatcctcttggtgtggtaaatctctctgctgtggtc 623

                       
Query: 597 accaatataatt 608
            |||| ||||||
Sbjct: 624 tccaagataatt 635



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 52/61 (85%)
 Strand = Plus / Plus

                                                                       
Query: 289 cggctttctgcttcaatcatggcacgccgtatcttgcctgccttgtagatcggcttgggt 348
           |||||||| ||||| ||||| | ||||||||  ||| ||||||||||||| ||||| |||
Sbjct: 316 cggctttcagcttcgatcatcgtacgccgtaggttggctgccttgtagattggcttcggt 375

            
Query: 349 a 349
           |
Sbjct: 376 a 376
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>ref|NM_118987.3| Arabidopsis thaliana nucleotide binding AT4G28450 mRNA, complete cds
          Length = 1715

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 126/157 (80%)
 Strand = Plus / Minus

                                                                        
Query: 434  gttcccttggaagaacaactcccaattgttctgaagcattggacttccacagtcgaagat 493
            ||||||||||||||| |||||||||||| ||||| || || | |||||| || |  ||||
Sbjct: 1214 gttcccttggaagaataactcccaattgctctgatgcctttgccttccatagcctgagat 1155

                                                                        
Query: 494  ttgtatcatcactgccagaaactagataggtcccatcatatgtgtatttcacacaaaaca 553
            | || ||||||||||| || | || ||| ||  ||||| |  | ||||| ||||| || |
Sbjct: 1154 tggtgtcatcactgcccgatattacatatgtagcatcacagctatatttgacacagaata 1095

                                                 
Query: 554  ccctttgcatcctcttagtatggtatatctccctgct 590
            | || ||||||||||| |||||||| || ||||||||
Sbjct: 1094 ctctctgcatcctctttgtatggtagatttccctgct 1058
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>gb|AY143901.1| Arabidopsis thaliana At4g28450/F20O9_130 mRNA, complete cds
          Length = 1359

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 126/157 (80%)
 Strand = Plus / Minus

                                                                        
Query: 434  gttcccttggaagaacaactcccaattgttctgaagcattggacttccacagtcgaagat 493
            ||||||||||||||| |||||||||||| ||||| || || | |||||| || |  ||||
Sbjct: 1123 gttcccttggaagaataactcccaattgctctgatgcctttgccttccatagcctgagat 1064

                                                                        
Query: 494  ttgtatcatcactgccagaaactagataggtcccatcatatgtgtatttcacacaaaaca 553
            | || ||||||||||| || | || ||| ||  ||||| |  | ||||| ||||| || |
Sbjct: 1063 tggtgtcatcactgcccgatattacatatgtagcatcacagctatatttgacacagaata 1004

                                                 
Query: 554  ccctttgcatcctcttagtatggtatatctccctgct 590
            | || ||||||||||| |||||||| || ||||||||
Sbjct: 1003 ctctctgcatcctctttgtatggtagatttccctgct 967
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>gb|AY045624.1| Arabidopsis thaliana AT4g28450/F20O9_130 mRNA, complete cds
          Length = 1589

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 126/157 (80%)
 Strand = Plus / Minus

                                                                        
Query: 434  gttcccttggaagaacaactcccaattgttctgaagcattggacttccacagtcgaagat 493
            ||||||||||||||| |||||||||||| ||||| || || | |||||| || |  ||||
Sbjct: 1213 gttcccttggaagaataactcccaattgctctgatgcctttgccttccatagcctgagat 1154

                                                                        
Query: 494  ttgtatcatcactgccagaaactagataggtcccatcatatgtgtatttcacacaaaaca 553
            | || ||||||||||| || | || ||| ||  ||||| |  | ||||| ||||| || |
Sbjct: 1153 tggtgtcatcactgcccgatattacatatgtagcatcacagctatatttgacacagaata 1094

                                                 
Query: 554  ccctttgcatcctcttagtatggtatatctccctgct 590
            | || ||||||||||| |||||||| || ||||||||
Sbjct: 1093 ctctctgcatcctctttgtatggtagatttccctgct 1057
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>gb|AF372943.1|AF372943 Arabidopsis thaliana AT4g28450/F20O9_130 mRNA, complete cds
          Length = 1620

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 126/157 (80%)
 Strand = Plus / Minus

                                                                        
Query: 434  gttcccttggaagaacaactcccaattgttctgaagcattggacttccacagtcgaagat 493
            ||||||||||||||| |||||||||||| ||||| || || | |||||| || |  ||||
Sbjct: 1163 gttcccttggaagaataactcccaattgctctgatgcctttgccttccatagcctgagat 1104

                                                                        
Query: 494  ttgtatcatcactgccagaaactagataggtcccatcatatgtgtatttcacacaaaaca 553
            | || ||||||||||| || | || ||| ||  ||||| |  | ||||| ||||| || |
Sbjct: 1103 tggtgtcatcactgcccgatattacatatgtagcatcacagctatatttgacacagaata 1044

                                                 
Query: 554  ccctttgcatcctcttagtatggtatatctccctgct 590
            | || ||||||||||| |||||||| || ||||||||
Sbjct: 1043 ctctctgcatcctctttgtatggtagatttccctgct 1007
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>emb|BX826972.1|CNS0A45D Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB82ZE11 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1564

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 126/157 (80%)
 Strand = Plus / Minus

                                                                        
Query: 434  gttcccttggaagaacaactcccaattgttctgaagcattggacttccacagtcgaagat 493
            ||||||||||||||| |||||||||||| ||||| || || | |||||| || |  ||||
Sbjct: 1167 gttcccttggaagaataactcccaattgctctgatgcctttgccttccatagcctgagat 1108

                                                                        
Query: 494  ttgtatcatcactgccagaaactagataggtcccatcatatgtgtatttcacacaaaaca 553
            | || ||||||||||| || | || ||| ||  ||||| |  | ||||| ||||| || |
Sbjct: 1107 tggtgtcatcactgcccgatattacatatgtagcatcacagctatatttgacacagaata 1048

                                                 
Query: 554  ccctttgcatcctcttagtatggtatatctccctgct 590
            | || ||||||||||| |||||||| || ||||||||
Sbjct: 1047 ctctctgcatcctctttgtatggtagatttccctgct 1011
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>emb|BX828093.1|CNS0A3TO Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH51ZD09 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1572

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 126/157 (80%)
 Strand = Plus / Minus

                                                                        
Query: 434  gttcccttggaagaacaactcccaattgttctgaagcattggacttccacagtcgaagat 493
            ||||||||||||||| |||||||||||| ||||| || || | |||||| || |  ||||
Sbjct: 1174 gttcccttggaagaataactcccaattgctctgatgcctttgccttccatagcctgagat 1115

                                                                        
Query: 494  ttgtatcatcactgccagaaactagataggtcccatcatatgtgtatttcacacaaaaca 553
            | || ||||||||||| || | || ||| ||  ||||| |  | ||||| ||||| || |
Sbjct: 1114 tggtgtcatcactgcccgatattacatatgtagcatcacagctatatttgacacagaata 1055

                                                 
Query: 554  ccctttgcatcctcttagtatggtatatctccctgct 590
            | || ||||||||||| |||||||| || ||||||||
Sbjct: 1054 ctctctgcatcctctttgtatggtagatttccctgct 1018
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>gb|AY062623.1| Arabidopsis thaliana SOF1 protein-like protein (F20O9.130) mRNA,
            complete cds
          Length = 1710

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 125/157 (79%)
 Strand = Plus / Minus

                                                                        
Query: 434  gttcccttggaagaacaactcccaattgttctgaagcattggacttccacagtcgaagat 493
            ||||||||||||||| || ||||||||| ||||| || || | |||||| || |  ||||
Sbjct: 1211 gttcccttggaagaataaatcccaattgctctgatgcctttgccttccatagcctgagat 1152

                                                                        
Query: 494  ttgtatcatcactgccagaaactagataggtcccatcatatgtgtatttcacacaaaaca 553
            | || ||||||||||| || | || ||| ||  ||||| |  | ||||| ||||| || |
Sbjct: 1151 tggtgtcatcactgcccgatattacatatgtagcatcacagctatatttgacacagaata 1092

                                                 
Query: 554  ccctttgcatcctcttagtatggtatatctccctgct 590
            | || ||||||||||| |||||||| || ||||||||
Sbjct: 1091 ctctctgcatcctctttgtatggtagatttccctgct 1055
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>emb|BX293553.4| Zebrafish DNA sequence from clone CH211-256J2 in linkage group 9,
             complete sequence
          Length = 74678

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 124   catctctcacactcgatcaaaaattaaac 152
             ||||||||||||| |||||||||||||||
Sbjct: 13179 catctctcacacttgatcaaaaattaaac 13207
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>emb|BX813621.1|CNS0ADIN Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB28ZE09 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1330

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 542 tcacacaaaacaccctttgcatcctc 567
           ||||||||||||| ||||||||||||
Sbjct: 397 tcacacaaaacacgctttgcatcctc 372
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>gb|AC163449.2| Mus musculus chromosome 3, clone RP23-193H21, complete sequence
          Length = 199224

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 540    tttcacacaaaacaccctttg 560
              |||||||||||||||||||||
Sbjct: 181041 tttcacacaaaacaccctttg 181061
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 271     cgccttctttcttctttccgg 291
               |||||||||||||||||||||
Sbjct: 2439642 cgccttctttcttctttccgg 2439622
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 271     cgccttctttcttctttccgg 291
               |||||||||||||||||||||
Sbjct: 3654788 cgccttctttcttctttccgg 3654768
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>ref|XM_545016.2| PREDICTED: Canis familiaris similar to small inducible cytokine
           subfamily E, member 1 (LOC487893), mRNA
          Length = 1037

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 494 ttgtatcatcactgccagaaa 514
           |||||||||||||||||||||
Sbjct: 539 ttgtatcatcactgccagaaa 559
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>gb|AC134894.4| Mus musculus BAC clone RP24-260P1 from chromosome 9, complete sequence
          Length = 136085

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 547   caaaacaccctttgcatcctc 567
             |||||||||||||||||||||
Sbjct: 43445 caaaacaccctttgcatcctc 43425
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>gb|AC131726.3| Mus musculus BAC clone RP23-132P9 from 3, complete sequence
          Length = 190554

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 540    tttcacacaaaacaccctttg 560
              |||||||||||||||||||||
Sbjct: 106251 tttcacacaaaacaccctttg 106231
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>gb|AC073486.5| Homo sapiens BAC clone RP11-807H17 from 7, complete sequence
          Length = 162911

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 417    atattcttgctttttgcgttccctt 441
              |||||||||||||||| ||||||||
Sbjct: 134774 atattcttgctttttgggttccctt 134798
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>gb|AC113527.8| Mus musculus chromosome 9, clone RP23-314E23, complete sequence
          Length = 202544

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 547    caaaacaccctttgcatcctc 567
              |||||||||||||||||||||
Sbjct: 194582 caaaacaccctttgcatcctc 194602
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 271     cgccttctttcttctttccgg 291
               |||||||||||||||||||||
Sbjct: 3397496 cgccttctttcttctttccgg 3397476
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>gb|BC103049.1| Bos taurus similar to small inducible cytokine subfamily E, member
           1, mRNA (cDNA clone MGC:128105 IMAGE:7986013), complete
           cds
          Length = 1141

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 494 ttgtatcatcactgccagaaa 514
           |||||||||||||||||||||
Sbjct: 561 ttgtatcatcactgccagaaa 581
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>ref|NM_001035018.1| Bos taurus similar to small inducible cytokine subfamily E, member
           1 (MGC128105), mRNA
          Length = 1141

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 494 ttgtatcatcactgccagaaa 514
           |||||||||||||||||||||
Sbjct: 561 ttgtatcatcactgccagaaa 581
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>gb|AC004403.1|AC004403 Homo sapiens Cosmid g5129z070, complete sequence
          Length = 39318

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 417   atattcttgctttttgcgttccctt 441
             |||||||||||||||| ||||||||
Sbjct: 32981 atattcttgctttttgggttccctt 32957
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>gb|AC160111.2| Mus musculus BAC clone RP24-144L16 from chromosome 9, complete sequence
          Length = 134313

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 547    caaaacaccctttgcatcctc 567
              |||||||||||||||||||||
Sbjct: 126685 caaaacaccctttgcatcctc 126665
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>ref|NM_025114.2| Homo sapiens centrosomal protein 290kDa (CEP290), mRNA
          Length = 7951

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 449  caactcccaattgttctgaa 468
            ||||||||||||||||||||
Sbjct: 7707 caactcccaattgttctgaa 7688
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>gb|AC162901.4| Mus musculus BAC clone RP23-417K5 from chromosome 8, complete sequence
          Length = 205244

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 161    taccactttgtttggcctcg 180
              ||||||||||||||||||||
Sbjct: 165749 taccactttgtttggcctcg 165768
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>gb|AC133451.14| Mus musculus chromosome 19, clone RP24-91H12, complete sequence
          Length = 184265

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 144   aaattaaacaccagnaataccac 166
             |||||||||||||| ||||||||
Sbjct: 90915 aaattaaacaccagcaataccac 90937
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>ref|XM_848222.1| PREDICTED: Canis familiaris similar to Multisynthetase complex
           auxiliary component p43 (LOC610681), mRNA
          Length = 402

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 494 ttgtatcatcactgccagaa 513
           ||||||||||||||||||||
Sbjct: 33  ttgtatcatcactgccagaa 52
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>gb|AC121777.3| Mus musculus BAC clone RP23-359A23 from chromosome 16, complete sequence
          Length = 192846

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 144    aaattaaacaccagnaataccac 166
              |||||||||||||| ||||||||
Sbjct: 165518 aaattaaacaccagcaataccac 165540
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>gb|DQ109808.1| Homo sapiens nephrocystin-6 (CEP290) mRNA, complete cds
          Length = 7951

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 449  caactcccaattgttctgaa 468
            ||||||||||||||||||||
Sbjct: 7707 caactcccaattgttctgaa 7688
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>gb|BC035136.2| Homo sapiens chromosome 12 open reading frame 29, mRNA (cDNA clone
            IMAGE:5264045), partial cds
          Length = 2726

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 449  caactcccaattgttctgaa 468
            ||||||||||||||||||||
Sbjct: 1812 caactcccaattgttctgaa 1831
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>gb|BC092422.1| Homo sapiens chromosome 12 open reading frame 29, mRNA (cDNA clone
            MGC:102978 IMAGE:30386540), complete cds
          Length = 2837

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 449  caactcccaattgttctgaa 468
            ||||||||||||||||||||
Sbjct: 1917 caactcccaattgttctgaa 1936
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 342     cttgggtacgtgcttatgtt 361
               ||||||||||||||||||||
Sbjct: 4436800 cttgggtacgtgcttatgtt 4436819
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>emb|AL138763.10| Human DNA sequence from clone RP11-225E2 on chromosome 10, complete
            sequence
          Length = 82422

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 102  aataaatatgttcccaacat 121
            ||||||||||||||||||||
Sbjct: 9675 aataaatatgttcccaacat 9656
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>gb|AC155807.3| Mus musculus BAC clone RP24-303N21 from chromosome 8, complete sequence
          Length = 167996

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 161   taccactttgtttggcctcg 180
             ||||||||||||||||||||
Sbjct: 10552 taccactttgtttggcctcg 10571
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>emb|AL161572.2|ATCHRIV68 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 68
          Length = 199749

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 559    tgcatcctcttagtatggtatatctccctgct 590
              ||||||||||| |||||||| || ||||||||
Sbjct: 177958 tgcatcctctttgtatggtagatttccctgct 177989
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>emb|AL021749.1|ATF20O9 Arabidopsis thaliana DNA chromosome 4, BAC clone F20O9 (ESSA project)
          Length = 93695

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 559   tgcatcctcttagtatggtatatctccctgct 590
             ||||||||||| |||||||| || ||||||||
Sbjct: 40041 tgcatcctctttgtatggtagatttccctgct 40072
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>emb|CR936776.1| Homo sapiens mRNA; cDNA DKFZp686P1154 (from clone DKFZp686P1154)
          Length = 2934

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 449  caactcccaattgttctgaa 468
            ||||||||||||||||||||
Sbjct: 1965 caactcccaattgttctgaa 1984
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>gb|AC087865.8| Homo sapiens 12 BAC RP11-66D24 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 169045

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 449   caactcccaattgttctgaa 468
             ||||||||||||||||||||
Sbjct: 20782 caactcccaattgttctgaa 20801
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>emb|CR857193.1| Pongo pygmaeus mRNA; cDNA DKFZp469F1722 (from clone DKFZp469F1722)
          Length = 2837

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 449  caactcccaattgttctgaa 468
            ||||||||||||||||||||
Sbjct: 1927 caactcccaattgttctgaa 1946
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>emb|BX648026.1|HSM808172 Homo sapiens mRNA; cDNA DKFZp779K0447 (from clone DKFZp779K0447)
          Length = 2728

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 449  caactcccaattgttctgaa 468
            ||||||||||||||||||||
Sbjct: 1811 caactcccaattgttctgaa 1830
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>emb|BX640968.1|HSM807122 Homo sapiens mRNA; cDNA DKFZp686L04169 (from clone DKFZp686L04169)
          Length = 2869

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 449  caactcccaattgttctgaa 468
            ||||||||||||||||||||
Sbjct: 1950 caactcccaattgttctgaa 1969
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>dbj|AK095477.1| Homo sapiens cDNA FLJ38158 fis, clone DFNES2001091
          Length = 2873

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 449  caactcccaattgttctgaa 468
            ||||||||||||||||||||
Sbjct: 1975 caactcccaattgttctgaa 1994
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>gb|AC091516.8| Homo sapiens 12q BAC RP11-474L23 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 158998

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 449    caactcccaattgttctgaa 468
              ||||||||||||||||||||
Sbjct: 121188 caactcccaattgttctgaa 121169
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>ref|NM_001009894.2| Homo sapiens chromosome 12 open reading frame 29 (C12orf29), mRNA
          Length = 2895

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 449  caactcccaattgttctgaa 468
            ||||||||||||||||||||
Sbjct: 1975 caactcccaattgttctgaa 1994
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>tpg|BK005587.1| TPA: TPA_exp: Homo sapiens centrosome protein Cep290 mRNA, complete
            cds
          Length = 7951

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 449  caactcccaattgttctgaa 468
            ||||||||||||||||||||
Sbjct: 7707 caactcccaattgttctgaa 7688
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>dbj|AK043456.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length
           enriched library, clone:A730096O14
           product:unclassifiable, full insert sequence
          Length = 773

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 144 aaattaaacaccagnaataccac 166
           |||||||||||||| ||||||||
Sbjct: 444 aaattaaacaccagcaataccac 466
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>dbj|AB002371.1| Homo sapiens mRNA for KIAA0373 gene, partial cds
          Length = 5967

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 449  caactcccaattgttctgaa 468
            ||||||||||||||||||||
Sbjct: 5723 caactcccaattgttctgaa 5704
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>emb|AL954171.10| Zebrafish DNA sequence from clone CH211-284B7 in linkage group 2,
              complete sequence
          Length = 148854

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 134    actcgatcaaaaattaaacaccag 157
              |||||||||||| |||||||||||
Sbjct: 112346 actcgatcaaaatttaaacaccag 112323
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>emb|AL132986.4|CNS01DTU Human chromosome 14 DNA sequence BAC R-723P16 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 182996

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 242   tggtcctgctccctggagca 261
             ||||||||||||||||||||
Sbjct: 13829 tggtcctgctccctggagca 13848
to top
>emb|AL117694.5|CNS01DRQ Human chromosome 14 DNA sequence BAC R-226F19 of library RPCI-11 from
            chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 166279

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 242  tggtcctgctccctggagca 261
            ||||||||||||||||||||
Sbjct: 5837 tggtcctgctccctggagca 5818
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>emb|BX537868.1|HSM805972 Homo sapiens mRNA; cDNA DKFZp313K0436 (from clone DKFZp313K0436);
            complete cds
          Length = 2919

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 449  caactcccaattgttctgaa 468
            ||||||||||||||||||||
Sbjct: 1947 caactcccaattgttctgaa 1966
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>emb|AL049382.1|HSM800167 Homo sapiens mRNA; cDNA DKFZp586K1318 (from clone DKFZp586K1318)
          Length = 1694

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 449 caactcccaattgttctgaa 468
           ||||||||||||||||||||
Sbjct: 701 caactcccaattgttctgaa 720


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,845,972
Number of Sequences: 3902068
Number of extensions: 5845972
Number of successful extensions: 120274
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 120104
Number of HSP's gapped (non-prelim): 166
length of query: 625
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 602
effective length of database: 17,143,297,704
effective search space: 10320265217808
effective search space used: 10320265217808
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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