| Clone Name | rbags6f10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|U51740.1|ITU51740 Ipomoea trifida secreted glycoprotein 3 (ISG3) mRNA, complete cds Length = 3927 Score = 48.1 bits (24), Expect = 0.036 Identities = 53/60 (88%), Gaps = 2/60 (3%) Strand = Plus / Plus Query: 514 tacgtcggcatatggtacaagaacatacccgaagacaactgt-gtgtgggttgccaaccg 572 ||||| ||||||||||||||||||||| | | |||||||| ||||||||||||||||| Sbjct: 1349 tacgttggcatatggtacaagaacatatctg-ttacaactgtggtgtgggttgccaaccg 1407
>gb|AC145383.3| Oryza sativa chromosome 3 BAC OSJNBa0038E17 genomic sequence, complete sequence Length = 141691 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 agcaaccaacccaacattttc 145 ||||||||||||||||||||| Sbjct: 47994 agcaaccaacccaacattttc 47974
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 agcaaccaacccaacattttc 145 ||||||||||||||||||||| Sbjct: 24672447 agcaaccaacccaacattttc 24672427
>gb|AC121892.3| Mus musculus BAC clone RP24-155I11 from chromosome 1, complete sequence Length = 152888 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 61 gaaaagaaaagtaaaaggctattct 85 |||||||||| |||||||||||||| Sbjct: 31462 gaaaagaaaaataaaaggctattct 31486
>ref|XM_965346.1| PREDICTED: Tribolium castaneum similar to Guanylate cyclase soluble subunit beta-1 (GCS-beta-1) (Soluble guanylate cyclase small subunit) (GCS-beta-3) (LOC659006), mRNA Length = 1890 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 478 ttcttctccctgtccagctcc 498 ||||||||||||||||||||| Sbjct: 1220 ttcttctccctgtccagctcc 1200
>gb|AC121799.5| Mus musculus BAC clone RP23-429M22 from chromosome 1, complete sequence Length = 212595 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 61 gaaaagaaaagtaaaaggctattct 85 |||||||||| |||||||||||||| Sbjct: 206788 gaaaagaaaaataaaaggctattct 206812
>emb|AL732379.5|CNS08C92 Oryza sativa chromosome 3, . BAC OSJNBa0025B02 of library OSJNBa from chromosome 3 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 136470 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 agcaaccaacccaacattttc 145 ||||||||||||||||||||| Sbjct: 103758 agcaaccaacccaacattttc 103738
>gb|AC006419.4| Arabidopsis thaliana chromosome 2 clone F3K12 map mi421, complete sequence Length = 113960 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 359 tttgttggtcattttggttat 379 ||||||||||||||||||||| Sbjct: 52193 tttgttggtcattttggttat 52173
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 agcaaccaacccaacattttc 145 ||||||||||||||||||||| Sbjct: 24589277 agcaaccaacccaacattttc 24589257
>gb|AC140324.3| Mus musculus BAC clone RP23-402K14 from 6, complete sequence Length = 200190 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 496 tccagcacaaaacattactac 516 ||||||||||||||||||||| Sbjct: 128280 tccagcacaaaacattactac 128260
>gb|AC118475.44| Mus musculus chromosome 13, clone RP23-359G8, complete sequence Length = 190284 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 65 agaaaagtaaaaggctattctgttt 89 |||||||||||| |||||||||||| Sbjct: 75271 agaaaagtaaaatgctattctgttt 75295
>ref|XM_529037.1| PREDICTED: Pan troglodytes similar to Nance-Horan syndrome protein (LOC473664), mRNA Length = 3312 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 484 tccctgtccagctccagcac 503 |||||||||||||||||||| Sbjct: 1585 tccctgtccagctccagcac 1604
>gb|BC082826.1| Xenopus laevis beta-catenin protein, mRNA (cDNA clone MGC:79992 IMAGE:6865915), complete cds Length = 3445 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 tccaggtgatagcaaccaac 134 |||||||||||||||||||| Sbjct: 2550 tccaggtgatagcaaccaac 2569
>gb|BC084054.1| Xenopus tropicalis cDNA clone IMAGE:5379061, containing frame-shift errors Length = 3492 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 tccaggtgatagcaaccaac 134 |||||||||||||||||||| Sbjct: 2562 tccaggtgatagcaaccaac 2581
>gb|AC128668.4| Mus musculus BAC clone RP24-81D14 from chromosome 8, complete sequence Length = 211075 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 276 ggcagttctttgcttccatatccc 299 ||||||||||||||||||| |||| Sbjct: 106151 ggcagttctttgcttccatctccc 106174
>gb|BC045258.1| Xenopus laevis catenin, mRNA (cDNA clone MGC:52601 IMAGE:4884660), complete cds Length = 3310 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 tccaggtgatagcaaccaac 134 |||||||||||||||||||| Sbjct: 2347 tccaggtgatagcaaccaac 2366
>gb|AC000118.1| Homo sapiens BAC clone CTB-72E11 from 7, complete sequence Length = 96625 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 62 aaaagaaaagtaaaaggctattct 85 |||||||||||||| ||||||||| Sbjct: 78123 aaaagaaaagtaaatggctattct 78146
>gb|AC109138.10| Mus musculus chromosome 19, clone RP23-41B18, complete sequence Length = 269155 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 487 ctgtccagctccagcacaaa 506 |||||||||||||||||||| Sbjct: 50891 ctgtccagctccagcacaaa 50872
>emb|BX119917.9| Human DNA sequence from clone RP11-262D11 on chromosome X Contains the gene for a novel protein (KIAA2001), the gene for a novel protein similar to multidomain presynaptic cytomatrix protein Piccolo; piccolo (presynaptic cytomatrix protein), an apoptosis inhibitor (FKSG2) pseudogene, the PIN4 gene for protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 4 (parvulin), the 3' end of the gene for a novel protein (FLJ20105) and a two CpG islands, complete sequence Length = 134620 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 484 tccctgtccagctccagcac 503 |||||||||||||||||||| Sbjct: 60933 tccctgtccagctccagcac 60952
>emb|AL390294.19| Human DNA sequence from clone RP11-379F12 on chromosome 10 Contains the 3' end of the TAF3 gene for TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa (TAF140,TAFII140), the GATA3 gene for GATA binding protein 3 (HDR,MGC5445), two novel genes and 3 CpG islands, complete sequence Length = 151559 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 482 tctccctgtccagctccagc 501 |||||||||||||||||||| Sbjct: 91942 tctccctgtccagctccagc 91923
>gb|AC078921.17| Homo sapiens 12q BAC RP11-385F23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 107641 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 tccaagattcccactttccc 198 |||||||||||||||||||| Sbjct: 46901 tccaagattcccactttccc 46882
>ref|NM_001016958.1| Xenopus tropicalis catenin (cadherin-associated protein), beta 1, 88kDa (ctnnb1), mRNA Length = 3382 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 tccaggtgatagcaaccaac 134 |||||||||||||||||||| Sbjct: 2402 tccaggtgatagcaaccaac 2421
>ref|NM_001013627.1| Homo sapiens similar to Nance-Horan syndrome protein (LOC340527), mRNA Length = 3978 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 484 tccctgtccagctccagcac 503 |||||||||||||||||||| Sbjct: 2115 tccctgtccagctccagcac 2134
>dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010 Length = 2039961 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 ctgactctgcctcagttctg 260 |||||||||||||||||||| Sbjct: 1413435 ctgactctgcctcagttctg 1413416
>ref|XM_936425.1| PREDICTED: Homo sapiens similar to Nance-Horan syndrome protein (LOC340527), mRNA Length = 3147 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 484 tccctgtccagctccagcac 503 |||||||||||||||||||| Sbjct: 1534 tccctgtccagctccagcac 1553
>gb|AC155644.7| Mus musculus 10 BAC RP24-435P22 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 161533 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 caaacaagaaaaacccagca 52 |||||||||||||||||||| Sbjct: 53991 caaacaagaaaaacccagca 53972
>gb|BC033261.1| Homo sapiens, clone IMAGE:5459109, mRNA Length = 4002 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 484 tccctgtccagctccagcac 503 |||||||||||||||||||| Sbjct: 2115 tccctgtccagctccagcac 2134
>gb|AF157641.2|AF157641 Desulfitobacterium dehalogenans Hrd6-1 (hrd6-1) gene, partial cds; and putative Ni/Fe hydrogenase small subunit precursor (hydA), putative Ni/Fe hydrogenase large subunit precursor (hydB), putative Ni/Fe hydrogenase B-type cytochrome subunit (hydC), and putative Ni/Fe hydrogenase processing protein (hydD) genes, complete cds Length = 4883 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 tacttccaagattcccactt 194 |||||||||||||||||||| Sbjct: 4712 tacttccaagattcccactt 4693
>gb|AC155891.2| Medicago truncatula chromosome 2 BAC clone mth2-4g10, complete sequence Length = 148303 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 acccaacattttcaaacttc 152 |||||||||||||||||||| Sbjct: 92417 acccaacattttcaaacttc 92398
>emb|CR761449.1| Xenopus tropicalis finished cDNA, clone TGas082a20 Length = 3382 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 tccaggtgatagcaaccaac 134 |||||||||||||||||||| Sbjct: 2402 tccaggtgatagcaaccaac 2421
>gb|AC118202.8| Mus musculus chromosome 10, clone RP23-378J3, complete sequence Length = 213862 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 caaacaagaaaaacccagca 52 |||||||||||||||||||| Sbjct: 207408 caaacaagaaaaacccagca 207389
>emb|AL824711.14| Mouse DNA sequence from clone RP23-112I20 on chromosome X, complete sequence Length = 118199 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 caatggatccccttccccta 339 |||||||||||||||||||| Sbjct: 51493 caatggatccccttccccta 51512
>emb|AL929582.10| Zebrafish DNA sequence from clone CH211-117M12, complete sequence Length = 175577 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 429 ttctgctggaagcaccatca 448 |||||||||||||||||||| Sbjct: 78383 ttctgctggaagcaccatca 78402
>emb|AL935269.7| Zebrafish DNA sequence from clone DKEY-46J18, complete sequence Length = 177658 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ttctgctggaagcaccatca 448 |||||||||||||||||||| Sbjct: 104244 ttctgctggaagcaccatca 104225
>gb|BC108764.1| Xenopus laevis beta-catenin protein, mRNA (cDNA clone MGC:132060 IMAGE:4755420), complete cds Length = 3385 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 tccaggtgatagcaaccaac 134 |||||||||||||||||||| Sbjct: 2547 tccaggtgatagcaaccaac 2566
>gb|AC133097.3| Mus musculus BAC clone RP23-287O2 from 1, complete sequence Length = 199276 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 478 ttcttctccctgtccagctc 497 |||||||||||||||||||| Sbjct: 37746 ttcttctccctgtccagctc 37765
>gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete genome Length = 2056416 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 587 ctgatccttcttctgcaaca 606 |||||||||||||||||||| Sbjct: 1710928 ctgatccttcttctgcaaca 1710947
>dbj|AP004499.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT16N13, TM0031, complete sequence Length = 97191 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 590 atccttcttctgcaacactc 609 |||||||||||||||||||| Sbjct: 85307 atccttcttctgcaacactc 85288
>gb|U15654.1|MMU15654 Mus musculus glutathione S-transferase pi class (mGSTpiA) and (mGSTpiB) genes, complete cds Length = 8125 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 487 ctgtccagctccagcacaaa 506 |||||||||||||||||||| Sbjct: 960 ctgtccagctccagcacaaa 979
>gb|M77013.1|XELCATB Xenopus laevis beta-catenin mRNA, complete cds Length = 2760 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 tccaggtgatagcaaccaac 134 |||||||||||||||||||| Sbjct: 2562 tccaggtgatagcaaccaac 2581 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,909,496 Number of Sequences: 3902068 Number of extensions: 6909496 Number of successful extensions: 132779 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 132632 Number of HSP's gapped (non-prelim): 147 length of query: 644 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 621 effective length of database: 17,143,297,704 effective search space: 10645987874184 effective search space used: 10645987874184 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)