>gb|AY144442.1| Sorghum bicolor BAC 95A23/98N8.1 Rph region, partial sequence
          Length = 268433

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 56/67 (83%)
 Strand = Plus / Plus

                                                                          
Query: 516    ctttgcngctggggatgagtttncagttttctgcgcctttgcagctgaggatgagttccc 575
              |||||| |||| ||||||| || |||||||||||  ||| || ||||||||||  |||||
Sbjct: 265248 ctttgcagctgtggatgaggtttcagttttctgcttcttcgctgctgaggatggcttccc 265307

                     
Query: 576    aattttc 582
              | |||||
Sbjct: 265308 agttttc 265314

>gb|AC124555.4| Mus musculus BAC clone RP23-245K17 from chromosome 14, complete sequence
          Length = 210174

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 582    cagcttctctgcagctgaacaa 603
              ||||||||||||||||||||||
Sbjct: 158759 cagcttctctgcagctgaacaa 158780

>gb|AC023421.7| Homo sapiens chromosome 18, clone RP11-116O18, complete sequence
          Length = 163365

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 575   caattttcagcttctctgcag 595
             |||||||||||||||||||||
Sbjct: 21363 caattttcagcttctctgcag 21343

>gb|AC107295.4| Homo sapiens 3 BAC RP11-1E5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 157773

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 226   ctcctcctgctgttcacctcc 246
             |||||||||||||||||||||
Sbjct: 20382 ctcctcctgctgttcacctcc 20362

>gb|AC117207.5| Mus musculus BAC clone RP23-278A7 from 8, complete sequence
          Length = 198927

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 401   cctgcttctttccatctgagg 421
             |||||||||||||||||||||
Sbjct: 12733 cctgcttctttccatctgagg 12753

>emb|AL671993.7| Mouse DNA sequence from clone RP23-428E5 on chromosome X, complete
             sequence
          Length = 194106

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 552   ctttgcagctgaggatgagtt 572
             |||||||||||||||||||||
Sbjct: 92381 ctttgcagctgaggatgagtt 92361

>gb|AC116860.15| Mus musculus chromosome 10, clone RP24-407B18, complete sequence
          Length = 193505

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 391   tttccagctgcctgcttcttt 411
             |||||||||||||||||||||
Sbjct: 54661 tttccagctgcctgcttcttt 54681

>gb|AC068064.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-199I14, complete
             sequence
          Length = 152776

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 381   tgtgaatgtgtttccagctg 400
             ||||||||||||||||||||
Sbjct: 74199 tgtgaatgtgtttccagctg 74180

>gb|AC119382.7| Rattus norvegicus 4 BAC CH230-125G2 (Children's Hospital Oakland
            Research Institute) complete sequence
          Length = 189442

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 329  ctgcctgcttctctccatct 348
            ||||||||||||||||||||
Sbjct: 5560 ctgcctgcttctctccatct 5541

>gb|AC132594.3| Mus musculus BAC clone RP24-222P6 from chromosome 7, complete sequence
          Length = 162814

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 460    gagtttgcagctgcctgctt 479
              ||||||||||||||||||||
Sbjct: 108934 gagtttgcagctgcctgctt 108953

>gb|AC126438.3| Mus musculus BAC clone RP24-255G1 from chromosome 17, complete sequence
          Length = 152802

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 220   ctttgactcctcctgctgtt 239
             ||||||||||||||||||||
Sbjct: 77269 ctttgactcctcctgctgtt 77288

>gb|AC123796.2| Mus musculus BAC clone RP24-320P9 from chromosome 8, complete sequence
          Length = 156593

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 564   ggatgagttcccaattttca 583
             ||||||||||||||||||||
Sbjct: 28349 ggatgagttcccaattttca 28330

>gb|AC126680.4| Mus musculus BAC clone RP24-347B21 from chromosome 7, complete sequence
          Length = 161973

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 460   gagtttgcagctgcctgctt 479
             ||||||||||||||||||||
Sbjct: 44928 gagtttgcagctgcctgctt 44947

>ref|XM_765153.1| Giardia lamblia ATCC 50803 hypothetical protein
           (GLP_162_26180_30757) partial mRNA
          Length = 4578

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 383 tgaatgtgtttccagctgcc 402
           ||||||||||||||||||||
Sbjct: 597 tgaatgtgtttccagctgcc 578

>ref|XM_774545.1| Giardia lamblia ATCC 50803 hypothetical protein
           (GLP_81_190845_189370) partial mRNA
          Length = 1476

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 460 gagtttgcagctgcctgctt 479
           ||||||||||||||||||||
Sbjct: 461 gagtttgcagctgcctgctt 442

>gb|AC116731.9| Mus musculus chromosome 8, clone RP23-346D17, complete sequence
          Length = 230139

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 564    ggatgagttcccaattttca 583
              ||||||||||||||||||||
Sbjct: 134987 ggatgagttcccaattttca 134968

>gb|AC096051.7| Rattus norvegicus 10 BAC CH230-21G1 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 216194

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 220    ctttgactcctcctgctgtt 239
              ||||||||||||||||||||
Sbjct: 211120 ctttgactcctcctgctgtt 211139

>gb|AC105600.5| Rattus norvegicus 4 BAC CH230-209E1 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 218874

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 324    tccagctgcctgcttctctccatc 347
              ||||||| ||||||||||||||||
Sbjct: 152207 tccagcttcctgcttctctccatc 152230

>emb|AL161508.2|ATCHRIV20 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 20
          Length = 196517

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 551   cctttgcagctgaggatgag 570
             ||||||||||||||||||||
Sbjct: 89267 cctttgcagctgaggatgag 89248

>dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010
          Length = 2039961

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 324     tccagctgcctgcttctctc 343
               ||||||||||||||||||||
Sbjct: 1795692 tccagctgcctgcttctctc 1795673

>gb|AC006413.4| Arabidopsis thaliana chromosome 2 clone F5K7 map ve013, complete
             sequence
          Length = 106716

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 552   ctttgcagctgaggatgagt 571
             ||||||||||||||||||||
Sbjct: 64923 ctttgcagctgaggatgagt 64904

>gb|AC022679.9| Homo sapiens chromosome 8, clone RP11-386G21, complete sequence
          Length = 160766

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 573    cccaattttcagcttctctg 592
              ||||||||||||||||||||
Sbjct: 121602 cccaattttcagcttctctg 121583

>gb|AC084834.4| Homo sapiens chromosome 8, clone RP11-107M13, complete sequence
          Length = 153304

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 573    cccaattttcagcttctctg 592
              ||||||||||||||||||||
Sbjct: 136839 cccaattttcagcttctctg 136858

>gb|AC006268.1|AC006268 Arabidopsis thaliana BAC T24G23 from chromosome IV near 21 cM, complete
             sequence
          Length = 105420

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 551   cctttgcagctgaggatgag 570
             ||||||||||||||||||||
Sbjct: 65906 cctttgcagctgaggatgag 65887

>dbj|AP000424.3| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1615E4
          Length = 177274

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 398    ctgcctgcttctttccatct 417
              ||||||||||||||||||||
Sbjct: 144884 ctgcctgcttctttccatct 144903


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,590,132
Number of Sequences: 3902068
Number of extensions: 5590132
Number of successful extensions: 103550
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103469
Number of HSP's gapped (non-prelim): 81
length of query: 605
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 582
effective length of database: 17,143,297,704
effective search space: 9977399263728
effective search space used: 9977399263728
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)