>BAZ2B_CHICK (Q9DE13) Bromodomain adjacent to zinc finger domain 2B|
           (Extracellular matrix protein F22)
          Length = 2130

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 20/66 (30%), Positives = 33/66 (50%)
 Frame = -3

Query: 510 ETTSDNLNTQGSSGDIFADMPALPDFDDMQLWFGEDGELTLTIQDYDESPQSEQDCQMEA 331
           E++S++ +  GSS D  ++  +  D DD+     E+ E     Q  +ES   E D + EA
Sbjct: 183 ESSSNSDSDSGSSSDTSSEGISSSDSDDL-----EEDEEEEEDQSAEESEDDESDSENEA 237

Query: 330 QHNHNN 313
            H + N
Sbjct: 238 HHENKN 243

>MMPL3_MYCLE (O06081) Putative membrane protein mmpL3|
          Length = 955

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 570 SATAEPISSPPLNMPMDIDTETTSDNLNTQG 478
           S TAEP ++ P+  P D D+E  ++ LN  G
Sbjct: 897 SETAEPTTALPIMRPQDNDSEVATEKLNALG 927

>BPA1_MOUSE (Q91ZU6) Bullous pemphigoid antigen 1, isoforms 1/2/3/4 (BPA)|
            (Hemidesmosomal plaque protein) (Dystonia musculorum
            protein) (Dystonin)
          Length = 7389

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 22/57 (38%), Positives = 23/57 (40%)
 Frame = -3

Query: 516  DTETTSDNLNTQGSSGDIFADMPALPDFDDMQLWFGEDGELTLTIQDYDESPQSEQD 346
            DT T SD       S D F D P   D D   L    D    L  +DYD S Q E D
Sbjct: 2362 DTATDSD-------SDDYFYDTPLFEDEDHDSLILQGDDRDCLQPEDYDTSLQEEND 2411

>SPT10_YEAST (P35208) Protein SPT10|
          Length = 640

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 22/84 (26%), Positives = 34/84 (40%)
 Frame = -3

Query: 567 ATAEPISSPPLNMPMDIDTETTSDNLNTQGSSGDIFADMPALPDFDDMQLWFGEDGELTL 388
           AT  PI + P  +P+ +      D  N +   GD F     L   +   +WF  DG + +
Sbjct: 54  ATMYPIPAYPDLLPLGL-LNFLLDEFNMEVEKGDSFPYYETLSLEEFKNVWFHNDGHVCI 112

Query: 387 TIQDYDESPQSEQDCQMEAQHNHN 316
            +    E P+ +     EA  N N
Sbjct: 113 MV--LGEIPELDYSMDTEADTNDN 134

>GCM_DROME (Q27403) Transcription factor glial cells missing (Protein glide)|
          Length = 504

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
 Frame = -3

Query: 555 PISSP-PLNMPMDIDTE-TTSDNLNTQGSSGDIFADMPALPDFDDMQLWFGEDGELTLTI 382
           PI+ P P+ +PM + +   T   +       D  + MP++ +FDD   W      L  ++
Sbjct: 7   PITMPVPMPVPMPVPSPPATKSRVAIDWDIND--SKMPSVGEFDDFNDWSNGHCRLIYSV 64

Query: 381 QDYDESPQSEQDCQMEAQHNHN 316
           Q  DE+ +      M   +NHN
Sbjct: 65  QS-DEARKHASGWAMRNTNNHN 85

>PML_HUMAN (P29590) Probable transcription factor PML (Tripartite motif|
           protein 19) (RING finger protein 71)
          Length = 882

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 426 CHQSLVEQACQQKCPRMNLVC*GCLRSFQCRCP 524
           C Q   E  C +  P ++ +C GCL +   +CP
Sbjct: 57  CQQCQAEAKCPKLLPCLHTLCSGCLEASGMQCP 89


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,202,607
Number of Sequences: 219361
Number of extensions: 1642982
Number of successful extensions: 3915
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3914
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5310515667
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)