ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags6f02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CF151_MOUSE (Q9D361) U11/U12 snRNP 48 kDa protein 32 1.6
2ARS2_MOUSE (Q99MR6) Arsenite-resistance protein 2 30 6.1
3MDR49_DROME (Q00449) Multidrug resistance protein homolog 49 (EC... 30 8.0

>CF151_MOUSE (Q9D361) U11/U12 snRNP 48 kDa protein|
          Length = 337

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = +1

Query: 157 SSRTLAEPETAGDTRDKNREQEEQSVGDLMNTGS---TEGEGHTRSTRPRSWHTQGTSKK 327
           SS    E   AGD  +KN E+   SV    + GS    E   H R+ R RS H +  +K 
Sbjct: 253 SSHWQEEQGRAGDAAEKNEERRSASVDSRQSGGSYLDVESSRHRRA-RSRSPHKRKRNKD 311

Query: 328 RSNRRR 345
           +S+  R
Sbjct: 312 KSSESR 317



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>ARS2_MOUSE (Q99MR6) Arsenite-resistance protein 2|
          Length = 875

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
 Frame = +1

Query: 154 RSSRTLAEPETAGDTRDKNREQEEQSVGDLMN---TGSTEGEGHTRSTRPRSWHTQGTSK 324
           R+   L E E   + +D+ +E  +Q+  D  N   T  +EG+G     +  +      SK
Sbjct: 290 RAGPALGEGERKANDKDEKKEDGKQAENDSSNDDKTKKSEGDGDKEEKKEEAEKEAKKSK 349

Query: 325 KRSNRRRS 348
           KR NR++S
Sbjct: 350 KR-NRKQS 356



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>MDR49_DROME (Q00449) Multidrug resistance protein homolog 49 (EC 3.6.3.44)|
           (P-glycoprotein 49)
          Length = 1302

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 151 LRSSRTLAEPETAGDTRDKNREQEEQSVGDLMNTGSTEGEGHTRSTRPRSWHTQGTSKKR 330
           L+ S+ L++ ET  D      ++EE    +L  +GS+   G   STR          K+R
Sbjct: 657 LQKSQNLSDEETDDD----EEDEEEDEEPELQTSGSSRDSGFRASTR---------RKRR 703

Query: 331 SNRRR 345
           S RR+
Sbjct: 704 SQRRK 708


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,269,506
Number of Sequences: 219361
Number of extensions: 973162
Number of successful extensions: 2936
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2925
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6029593548
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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