ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5p24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1XGPT_HAEDU (Q7VKP2) Xanthine phosphoribosyltransferase (EC 2.4.2... 30 2.0
2ZFAN3_RAT (Q5U2M7) AN1-type zinc finger protein 3 (Testis-expres... 30 2.0
3ZFAN3_MOUSE (Q497H0) AN1-type zinc finger protein 3 (Testis-expr... 30 2.0
4ZFAN3_HUMAN (Q9H8U3) AN1-type zinc finger protein 3 (Testis-expr... 30 2.0
5ZFAN3_XENLA (Q66J85) AN1-type zinc finger protein 3 homolog 30 2.0
6MIG15_CAEEL (Q23356) Serine/threonine-protein kinase mig-15 (EC ... 29 5.8
7XGPT_MANSM (Q65QN6) Xanthine phosphoribosyltransferase (EC 2.4.2... 28 9.9

>XGPT_HAEDU (Q7VKP2) Xanthine phosphoribosyltransferase (EC 2.4.2.22)|
           (Xanthine-guanine phosphoribosyltransferase) (XGPRT)
          Length = 157

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -2

Query: 363 AKKA*IRYEPAVAVTRIGHDPNGKARVIHSQQFDRTRGFIVI 238
           A++  IR+   V ++   HD  G+ +V+H+ Q D   GFIV+
Sbjct: 52  ARELSIRHVETVCISSYEHDEQGELKVLHAAQTD-GEGFIVV 92



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>ZFAN3_RAT (Q5U2M7) AN1-type zinc finger protein 3 (Testis-expressed sequence|
           27)
          Length = 227

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 354 PSLPTRAACGR*GASPSHSPCSRCHA 431
           PSLP R  CG  G+S + + CS+C A
Sbjct: 12  PSLPPRCPCGFWGSSKTMNLCSKCFA 37



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>ZFAN3_MOUSE (Q497H0) AN1-type zinc finger protein 3 (Testis-expressed sequence|
           27)
          Length = 227

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 354 PSLPTRAACGR*GASPSHSPCSRCHA 431
           PSLP R  CG  G+S + + CS+C A
Sbjct: 12  PSLPPRCPCGFWGSSKTMNLCSKCFA 37



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>ZFAN3_HUMAN (Q9H8U3) AN1-type zinc finger protein 3 (Testis-expressed sequence|
           27)
          Length = 227

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 354 PSLPTRAACGR*GASPSHSPCSRCHA 431
           PSLP R  CG  G+S + + CS+C A
Sbjct: 12  PSLPPRCPCGFWGSSKTMNLCSKCFA 37



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>ZFAN3_XENLA (Q66J85) AN1-type zinc finger protein 3 homolog|
          Length = 226

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 354 PSLPTRAACGR*GASPSHSPCSRCHA 431
           PSLP R  CG  G+S + + CS+C A
Sbjct: 12  PSLPPRCPCGFWGSSKTMNLCSKCFA 37



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>MIG15_CAEEL (Q23356) Serine/threonine-protein kinase mig-15 (EC 2.7.11.1)|
           (Abnormal cell migration protein 15)
          Length = 1096

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +3

Query: 282 SPSPFHWDHGQFLSPRLLVRIVSMPSLPTRAACGR*GASPSHSPCSR 422
           +P+PF +   +++ PR     V + ++ +R A       P HSP SR
Sbjct: 385 APAPFQYQQSRYVEPRRESSEVKLRAVSSRGAAD----GPRHSPASR 427



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>XGPT_MANSM (Q65QN6) Xanthine phosphoribosyltransferase (EC 2.4.2.22)|
           (Xanthine-guanine phosphoribosyltransferase) (XGPRT)
          Length = 152

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -2

Query: 363 AKKA*IRYEPAVAVTRIGHDPNGKARVIHSQQFDRTRGFIVI 238
           A++  +R+   V +    HD  G  +VIH  + D   GFIV+
Sbjct: 47  ARELGLRHVETVCIASYDHDQQGDLKVIHKAETD-GEGFIVV 87


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,390,737
Number of Sequences: 219361
Number of extensions: 1055270
Number of successful extensions: 2153
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2153
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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