ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5p20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_196842.1| Oryza sativa (japonica cultivar-group) putative... 402 e-109
2dbj|AK101347.1| Oryza sativa (japonica cultivar-group) cDNA clon... 394 e-106
3dbj|AK071427.1| Oryza sativa (japonica cultivar-group) cDNA clon... 389 e-105
4gb|AC034258.10| Oryza sativa chromosome 10 BAC OSJNBb0011A08 gen... 157 6e-35
5dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 157 6e-35
6gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 157 6e-35
7ref|XM_480354.1| Oryza sativa (japonica cultivar-group), mRNA 54 6e-04
8dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 54 6e-04
9dbj|AP003878.3| Oryza sativa (japonica cultivar-group) genomic D... 54 6e-04
10dbj|AP004619.3| Oryza sativa (japonica cultivar-group) genomic D... 54 6e-04
11ref|NM_111007.2| Arabidopsis thaliana nuclease/ nucleic acid bin... 52 0.003
12gb|AC010870.6|ATAC010870 Arabidopsis thaliana chromosome III BAC... 52 0.003
13gb|BT010430.1| Arabidopsis thaliana At3g01410 mRNA, complete cds 52 0.003
14dbj|AK176396.1| Arabidopsis thaliana mRNA for putative RNase H, ... 52 0.003
15emb|AL845430.12| Mouse DNA sequence from clone RP23-402L5 on chr... 48 0.039
16gb|BT017897.1| Zea mays clone EL01N0515G04.c mRNA sequence 46 0.16
17gb|AY104723.1| Zea mays PCO115255 mRNA sequence 46 0.16
18ref|XM_462905.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.4
19gb|AC149223.2| Mus musculus BAC clone RP23-203K1 from chromosome... 42 2.4
20gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 2.4
21gb|AC140980.3| Mus musculus BAC clone RP24-255K12 from chromosom... 42 2.4
22gb|AC146308.2| Medicago truncatula clone mth2-10a12, complete se... 42 2.4
23emb|AL121904.13|HSDJ410C9 Human DNA sequence from clone RP3-410C... 42 2.4
24emb|AL022576.2|HS20J23 Human DNA sequence from clone RP1-20J23 o... 42 2.4
25gb|AC164290.4| Mus musculus BAC clone RP23-385O17 from chromosom... 42 2.4
26dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
27dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
28gb|AC005230.1|AC005230 Homo sapiens PAC clone RP5-1163L11 from 1... 42 2.4
29gb|AC090714.9| Oryza sativa chromosome 3 BAC OSJNBb0031G04 genom... 42 2.4
30dbj|AP004752.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
31dbj|AP004769.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
32emb|AL445903.3|CNS07EEU Human chromosome 14 DNA sequence BAC R-1... 42 2.4
33gb|AC126554.3| Mus musculus BAC clone RP23-465O13 from 12, compl... 42 2.4
34gb|AC147783.13| Mus musculus chromosome 12, clone RP23-256M6, co... 42 2.4
35emb|AL590389.8| Mouse DNA sequence from clone RP23-393F23 on chr... 42 2.4
36gb|AC152952.1| Mus musculus 6 BAC RP23-86B3 (Roswell Park Cancer... 40 9.6
37gb|AC158953.8| Mus musculus chromosome 3, clone RP23-437C24, com... 40 9.6
38gb|AC164077.5| Mus musculus chromosome 3, clone RP24-352M15, com... 40 9.6
39gb|AC135359.2| Mus musculus BAC clone RP24-209E17 from chromosom... 40 9.6
40gb|AC134586.4| Mus musculus BAC clone RP23-304K3 from chromosome... 40 9.6
41gb|AC124720.3| Mus musculus BAC clone RP23-387F14 from chromosom... 40 9.6
42emb|BX936420.9| Zebrafish DNA sequence from clone DKEY-7F16 in l... 40 9.6
43gb|AC004932.4| Homo sapiens PAC clone RP5-943F2 from 7, complete... 40 9.6
44ref|XM_541477.2| PREDICTED: Canis familiaris similar to leucine ... 40 9.6
45ref|XM_662079.1| Cryptosporidium hominis TU502 cytoskeletal prot... 40 9.6
46gb|AC124037.5| Mus Musculus chromosome 4 BAC, clone CT7-104L5 st... 40 9.6
47gb|AC111062.13| Mus musculus chromosome 3, clone RP24-100J21, co... 40 9.6
48emb|AL589701.9| Mouse DNA sequence from clone RP23-202F3 on chro... 40 9.6
49gb|AC104164.2| Homo sapiens chromosome 3 clone RP11-641C17, comp... 40 9.6
50emb|BX677663.6| Zebrafish DNA sequence from clone DKEY-76N12 in ... 40 9.6
51ref|XM_626490.1| Cryptosporidium parvum Iowa II hypothetical pro... 40 9.6
52emb|AL928869.11| Mouse DNA sequence from clone RP23-393F9 on chr... 40 9.6
53gb|AC117394.10| Homo sapiens 3 BAC RP11-529G21 (Roswell Park Can... 40 9.6
54gb|AC141643.4| Mus musculus BAC clone RP23-198F6 from chromosome... 40 9.6
55gb|AC107822.18| Mus musculus chromosome 7, clone RP23-182C11, co... 40 9.6
56emb|BX000437.7| Zebrafish DNA sequence from clone DKEY-106O5 in ... 40 9.6
57gb|U66722.1|HSU66722 Human chromosome 3p14.2 fragile site FRA3B ... 40 9.6
58gb|AY609577.1| Sus scrofa clone Clu_194599.scr.msk.p1.Contig2, m... 40 9.6
59gb|AC132614.3| Mus musculus BAC clone RP23-298K1 from 6, complet... 40 9.6
60emb|AL672274.7| Mouse DNA sequence from clone RP23-351G20 on chr... 40 9.6
61emb|AL671866.8| Mouse DNA sequence from clone RP23-59L24 on chro... 40 9.6
62emb|AL646049.14| Mouse DNA sequence from clone RP23-63A9 on chro... 40 9.6 
>ref|NM_196842.1| Oryza sativa (japonica cultivar-group) putative RNase
           (OSJNBb0011A08.1), mRNA
          Length = 1411

 Score =  402 bits (203), Expect = e-109
 Identities = 395/459 (86%)
 Strand = Plus / Minus

                                                                       
Query: 79  agccatcgccacgctcctcagaaaccgcgccgcttgcgagagtgatggctatgtttgcct 138
           |||||||||||||||||||||| ||| | || || |  ||||| || ||||||||||| |
Sbjct: 868 agccatcgccacgctcctcagagaccacaccactggaaagagtaatagctatgtttgctt 809

                                                                       
Query: 139 ggcgatcagcctcagagttccattcccgtcgcacatggtggacctcaaaagagatgaagt 198
           ||||||| ||||| |  |||||||||||||| |  |||| || |||||| |||| |||||
Sbjct: 808 ggcgatctgcctcggcattccattcccgtcgaatgtggttgatctcaaatgagacgaagt 749

                                                                       
Query: 199 tctcttgaagttttctcacttctttgcacagttccatcatgttctctttctttgcttgcc 258
           | ||||  || ||||||||||| ||||||||||||||||||||||  ||||| | |||||
Sbjct: 748 tttctttgagctttctcacttccttgcacagttccatcatgttctggttcttcgtttgcc 689

                                                                       
Query: 259 atgtacctttcacctgataacagactagttgagagtcaccatatactttgattctcttga 318
           ||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||
Sbjct: 688 atgtacctttcacctgataacagactagttgagagtcgccatatactatgattttcttga 629

                                                                       
Query: 319 atccaagcctgatggcatatttcaggcctaagataaggccccgatactcagcaacattat 378
           | ||| |||| || |||||| |||  |||||||| |||||||| || |||||||||||||
Sbjct: 628 aaccatgcctaatagcatatctcaatcctaagatcaggccccggtattcagcaacattat 569

                                                                       
Query: 379 tggtagcaacaccaagaccctcacggagtcgagatatcactcttccgtcttcagtcatca 438
           ||||| ||| |||||||||||| || ||||||||||||||||| || ||||||||||| |
Sbjct: 568 tggtaacaataccaagaccctcgcgaagtcgagatatcactctcccatcttcagtcataa 509

                                                                       
Query: 439 gtacagctccagcacctgattttcctgggtttccttttgaagcaccatcaaagtgaacaa 498
           | ||||| |||||||| | ||||||||| |||||||| || |||||||| |||||||  |
Sbjct: 508 gcacagccccagcacccgcttttcctggatttcctttcgatgcaccatcgaagtgaagta 449

                                                  
Query: 499 cacataccatatattgttttgagacaggttgtgcatcaa 537
             ||||||||||||||||| |||| ||||||||||||||
Sbjct: 448 agcataccatatattgtttcgagagaggttgtgcatcaa 410
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>dbj|AK101347.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034L02, full
            insert sequence
          Length = 1705

 Score =  394 bits (199), Expect = e-106
 Identities = 394/459 (85%)
 Strand = Plus / Minus

                                                                        
Query: 79   agccatcgccacgctcctcagaaaccgcgccgcttgcgagagtgatggctatgtttgcct 138
            |||||||||||||||||||||| ||| | || || |  ||||| || ||||||||||| |
Sbjct: 1185 agccatcgccacgctcctcagagaccacaccactggaaagagtaatagctatgtttgctt 1126

                                                                        
Query: 139  ggcgatcagcctcagagttccattcccgtcgcacatggtggacctcaaaagagatgaagt 198
            ||||||| ||||| |  |||||||||||||| |  |||| || |||||| |||| |||||
Sbjct: 1125 ggcgatctgcctcggcattccattcccgtcgaatgtggttgatctcaaatgagacgaagt 1066

                                                                        
Query: 199  tctcttgaagttttctcacttctttgcacagttccatcatgttctctttctttgcttgcc 258
            | ||||  || ||||||||||| |||||||||||||||||||||   ||||| | |||||
Sbjct: 1065 tttctttgagctttctcacttccttgcacagttccatcatgttccggttcttcgtttgcc 1006

                                                                        
Query: 259  atgtacctttcacctgataacagactagttgagagtcaccatatactttgattctcttga 318
            ||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||
Sbjct: 1005 atgtacctttcacctgataacagactagttgagagtcgccatatactatgattttcttga 946

                                                                        
Query: 319  atccaagcctgatggcatatttcaggcctaagataaggccccgatactcagcaacattat 378
            | ||| |||| || |||||| |||  |||||||| |||||||| || |||||||||||||
Sbjct: 945  aaccatgcctaatagcatatctcaatcctaagatcaggccccggtattcagcaacattat 886

                                                                        
Query: 379  tggtagcaacaccaagaccctcacggagtcgagatatcactcttccgtcttcagtcatca 438
            ||||| ||| |||||||||||| || ||||||||||||||||| || ||||||||||| |
Sbjct: 885  tggtaacaataccaagaccctcgcgaagtcgagatatcactctcccatcttcagtcataa 826

                                                                        
Query: 439  gtacagctccagcacctgattttcctgggtttccttttgaagcaccatcaaagtgaacaa 498
            | ||||| |||||||| | ||||||||| |||||||| || |||||||| |||||||  |
Sbjct: 825  gcacagccccagcacccgcttttcctggatttcctttcgatgcaccatcgaagtgaagta 766

                                                   
Query: 499  cacataccatatattgttttgagacaggttgtgcatcaa 537
              ||||||||||||||||| |||| ||||||||||||||
Sbjct: 765  agcataccatatattgtttcgagagaggttgtgcatcaa 727
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>dbj|AK071427.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023098H16, full
            insert sequence
          Length = 1556

 Score =  389 bits (196), Expect = e-105
 Identities = 394/459 (85%), Gaps = 2/459 (0%)
 Strand = Plus / Minus

                                                                        
Query: 79   agccatcgccacgctcctcagaaaccgcgccgcttgcgagagtgatggctatgtttgcct 138
            |||||||||||||||||||||| ||| | || || |  ||||| || ||||||||||| |
Sbjct: 1209 agccatcgccacgctcctcagagaccacaccactggaaagagtaatagctatgtttgctt 1150

                                                                        
Query: 139  ggcgatcagcctcagagttccattcccgtcgcacatggtggacctcaaaagagatgaagt 198
            ||||||| ||||| |  |||||||||||||| |  |||| || |||||| |||| |||||
Sbjct: 1149 ggcgatctgcctcggcattccattcccgtcgaatgtggttgatctcaaatgagacgaagt 1090

                                                                        
Query: 199  tctcttgaagttttctcacttctttgcacagttccatcatgttctctttctttgcttgcc 258
            | ||||  || ||||||||||| ||||||||||||||||||||||  ||||| | |||||
Sbjct: 1089 tttctttgagctttctcacttccttgcacagttccatcatgttctggttcttcgtttgcc 1030

                                                                        
Query: 259  atgtacctttcacctgataacagactagttgagagtcaccatatactttgattctcttga 318
            ||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||
Sbjct: 1029 atgtacctttcacctgataacagactagttgagagtcgccatatactatgattttcttga 970

                                                                        
Query: 319  atccaagcctgatggcatatttcaggcctaagataaggccccgatactcagcaacattat 378
            | ||| |||| || |||||| |||  |||||||| |||||||| || |||||||||||||
Sbjct: 969  aaccatgcctaatagcatatctcaatcctaagatcaggccccggtattcagcaacattat 910

                                                                        
Query: 379  tggtagcaacaccaagaccctcacggagtcgagatatcactcttccgtcttcagtcatca 438
            ||||| ||| |||||||||||| || ||||||||||||||||  || ||||||||||| |
Sbjct: 909  tggtaacaataccaagaccctcgcgaagtcgagatatcactc--ccatcttcagtcataa 852

                                                                        
Query: 439  gtacagctccagcacctgattttcctgggtttccttttgaagcaccatcaaagtgaacaa 498
            | ||||| |||||||| | ||||||||| |||||||| || |||||||| |||||||  |
Sbjct: 851  gcacagccccagcacccgcttttcctggatttcctttcgatgcaccatcgaagtgaagta 792

                                                   
Query: 499  cacataccatatattgttttgagacaggttgtgcatcaa 537
              ||||||||||||||||| |||| ||||||||||||||
Sbjct: 791  agcataccatatattgtttcgagagaggttgtgcatcaa 753
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>gb|AC034258.10| Oryza sativa chromosome 10 BAC OSJNBb0011A08 genomic sequence, complete
             sequence
          Length = 117157

 Score =  157 bits (79), Expect = 6e-35
 Identities = 130/147 (88%)
 Strand = Plus / Plus

                                                                         
Query: 270   acctgataacagactagttgagagtcaccatatactttgattctcttgaatccaagcctg 329
             |||||||||||||||||||||||||| ||||||||| ||||| ||||||| ||| |||| 
Sbjct: 27938 acctgataacagactagttgagagtcgccatatactatgattttcttgaaaccatgccta 27997

                                                                         
Query: 330   atggcatatttcaggcctaagataaggccccgatactcagcaacattattggtagcaaca 389
             || |||||| |||  |||||||| |||||||| || |||||||||||||||||| ||| |
Sbjct: 27998 atagcatatctcaatcctaagatcaggccccggtattcagcaacattattggtaacaata 28057

                                        
Query: 390   ccaagaccctcacggagtcgagatatc 416
             ||||||||||| || ||||||||||||
Sbjct: 28058 ccaagaccctcgcgaagtcgagatatc 28084



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 81/92 (88%)
 Strand = Plus / Plus

                                                                         
Query: 182   ctcaaaagagatgaagttctcttgaagttttctcacttctttgcacagttccatcatgtt 241
             |||||| |||| |||||| ||||  || ||||||||||| ||||||||||||||||||||
Sbjct: 27445 ctcaaatgagacgaagttttctttgagctttctcacttccttgcacagttccatcatgtt 27504

                                             
Query: 242   ctctttctttgcttgccatgtacctttcacct 273
             ||  ||||| | ||||||||||||||||||||
Sbjct: 27505 ctggttcttcgtttgccatgtacctttcacct 27536



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 69/80 (86%)
 Strand = Plus / Plus

                                                                         
Query: 416   cactcttccgtcttcagtcatcagtacagctccagcacctgattttcctgggtttccttt 475
             |||||| || ||||||||||| || ||||| |||||||| | ||||||||| ||||||||
Sbjct: 28164 cactctcccatcttcagtcataagcacagccccagcacccgcttttcctggatttccttt 28223

                                 
Query: 476   tgaagcaccatcaaagtgaa 495
              || |||||||| |||||||
Sbjct: 28224 cgatgcaccatcgaagtgaa 28243



 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 79    agccatcgccacgctcctcaga 100
             ||||||||||||||||||||||
Sbjct: 26999 agccatcgccacgctcctcaga 27020



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 509   atattgttttgagacaggttgtgcatcaa 537
             ||||||||| |||| ||||||||||||||
Sbjct: 29272 atattgtttcgagagaggttgtgcatcaa 29300



 Score = 40.1 bits (20), Expect = 9.6
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                             
Query: 117   agagtgatggctatgtttgcctggcgatcagcctcagagttccattcc 164
             ||||| || ||||||||||| |||||||| ||||| |  |||||||||
Sbjct: 27116 agagtaatagctatgtttgcttggcgatctgcctcggcattccattcc 27163
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  157 bits (79), Expect = 6e-35
 Identities = 130/147 (88%)
 Strand = Plus / Minus

                                                                            
Query: 270      acctgataacagactagttgagagtcaccatatactttgattctcttgaatccaagcctg 329
                |||||||||||||||||||||||||| ||||||||| ||||| ||||||| ||| |||| 
Sbjct: 16330145 acctgataacagactagttgagagtcgccatatactatgattttcttgaaaccatgccta 16330086

                                                                            
Query: 330      atggcatatttcaggcctaagataaggccccgatactcagcaacattattggtagcaaca 389
                || |||||| |||  |||||||| |||||||| || |||||||||||||||||| ||| |
Sbjct: 16330085 atagcatatctcaatcctaagatcaggccccggtattcagcaacattattggtaacaata 16330026

                                           
Query: 390      ccaagaccctcacggagtcgagatatc 416
                ||||||||||| || ||||||||||||
Sbjct: 16330025 ccaagaccctcgcgaagtcgagatatc 16329999



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 81/92 (88%)
 Strand = Plus / Minus

                                                                            
Query: 182      ctcaaaagagatgaagttctcttgaagttttctcacttctttgcacagttccatcatgtt 241
                |||||| |||| |||||| ||||  || ||||||||||| ||||||||||||||||||||
Sbjct: 16330638 ctcaaatgagacgaagttttctttgagctttctcacttccttgcacagttccatcatgtt 16330579

                                                
Query: 242      ctctttctttgcttgccatgtacctttcacct 273
                ||  ||||| | ||||||||||||||||||||
Sbjct: 16330578 ctggttcttcgtttgccatgtacctttcacct 16330547



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 69/80 (86%)
 Strand = Plus / Minus

                                                                            
Query: 416      cactcttccgtcttcagtcatcagtacagctccagcacctgattttcctgggtttccttt 475
                |||||| || ||||||||||| || ||||| |||||||| | ||||||||| ||||||||
Sbjct: 16329919 cactctcccatcttcagtcataagcacagccccagcacccgcttttcctggatttccttt 16329860

                                    
Query: 476      tgaagcaccatcaaagtgaa 495
                 || |||||||| |||||||
Sbjct: 16329859 cgatgcaccatcgaagtgaa 16329840



 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 79       agccatcgccacgctcctcaga 100
                ||||||||||||||||||||||
Sbjct: 16331084 agccatcgccacgctcctcaga 16331063



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 509      atattgttttgagacaggttgtgcatcaa 537
                ||||||||| |||| ||||||||||||||
Sbjct: 16328811 atattgtttcgagagaggttgtgcatcaa 16328783



 Score = 40.1 bits (20), Expect = 9.6
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                                
Query: 117      agagtgatggctatgtttgcctggcgatcagcctcagagttccattcc 164
                ||||| || ||||||||||| |||||||| ||||| |  |||||||||
Sbjct: 16330967 agagtaatagctatgtttgcttggcgatctgcctcggcattccattcc 16330920
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  157 bits (79), Expect = 6e-35
 Identities = 130/147 (88%)
 Strand = Plus / Minus

                                                                            
Query: 270      acctgataacagactagttgagagtcaccatatactttgattctcttgaatccaagcctg 329
                |||||||||||||||||||||||||| ||||||||| ||||| ||||||| ||| |||| 
Sbjct: 16338386 acctgataacagactagttgagagtcgccatatactatgattttcttgaaaccatgccta 16338327

                                                                            
Query: 330      atggcatatttcaggcctaagataaggccccgatactcagcaacattattggtagcaaca 389
                || |||||| |||  |||||||| |||||||| || |||||||||||||||||| ||| |
Sbjct: 16338326 atagcatatctcaatcctaagatcaggccccggtattcagcaacattattggtaacaata 16338267

                                           
Query: 390      ccaagaccctcacggagtcgagatatc 416
                ||||||||||| || ||||||||||||
Sbjct: 16338266 ccaagaccctcgcgaagtcgagatatc 16338240



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 81/92 (88%)
 Strand = Plus / Minus

                                                                            
Query: 182      ctcaaaagagatgaagttctcttgaagttttctcacttctttgcacagttccatcatgtt 241
                |||||| |||| |||||| ||||  || ||||||||||| ||||||||||||||||||||
Sbjct: 16338879 ctcaaatgagacgaagttttctttgagctttctcacttccttgcacagttccatcatgtt 16338820

                                                
Query: 242      ctctttctttgcttgccatgtacctttcacct 273
                ||  ||||| | ||||||||||||||||||||
Sbjct: 16338819 ctggttcttcgtttgccatgtacctttcacct 16338788



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 69/80 (86%)
 Strand = Plus / Minus

                                                                            
Query: 416      cactcttccgtcttcagtcatcagtacagctccagcacctgattttcctgggtttccttt 475
                |||||| || ||||||||||| || ||||| |||||||| | ||||||||| ||||||||
Sbjct: 16338160 cactctcccatcttcagtcataagcacagccccagcacccgcttttcctggatttccttt 16338101

                                    
Query: 476      tgaagcaccatcaaagtgaa 495
                 || |||||||| |||||||
Sbjct: 16338100 cgatgcaccatcgaagtgaa 16338081



 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 79       agccatcgccacgctcctcaga 100
                ||||||||||||||||||||||
Sbjct: 16339325 agccatcgccacgctcctcaga 16339304



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 509      atattgttttgagacaggttgtgcatcaa 537
                ||||||||| |||| ||||||||||||||
Sbjct: 16337052 atattgtttcgagagaggttgtgcatcaa 16337024



 Score = 40.1 bits (20), Expect = 9.6
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                                
Query: 117      agagtgatggctatgtttgcctggcgatcagcctcagagttccattcc 164
                ||||| || ||||||||||| |||||||| ||||| |  |||||||||
Sbjct: 16339208 agagtaatagctatgtttgcttggcgatctgcctcggcattccattcc 16339161
to top
>ref|XM_480354.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1056

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                          
Query: 444 gctccagcacctgattttcctgggtttccttttgaagcaccatcaaa 490
           ||||||||||||| ||| || || |||||||| ||||||||||||||
Sbjct: 674 gctccagcacctgctttcccaggatttcctttagaagcaccatcaaa 628
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                              
Query: 444     gctccagcacctgattttcctgggtttccttttgaagcaccatcaaa 490
               ||||||||||||| ||| || || |||||||| ||||||||||||||
Sbjct: 4561683 gctccagcacctgctttcccaggatttcctttagaagcaccatcaaa 4561729
to top
>dbj|AP003878.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1120_C08
          Length = 150300

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                            
Query: 444   gctccagcacctgattttcctgggtttccttttgaagcaccatcaaa 490
             ||||||||||||| ||| || || |||||||| ||||||||||||||
Sbjct: 85531 gctccagcacctgctttcccaggatttcctttagaagcaccatcaaa 85577
to top
>dbj|AP004619.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0583B06
          Length = 134442

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                             
Query: 444    gctccagcacctgattttcctgggtttccttttgaagcaccatcaaa 490
              ||||||||||||| ||| || || |||||||| ||||||||||||||
Sbjct: 127573 gctccagcacctgctttcccaggatttcctttagaagcaccatcaaa 127619
to top
>ref|NM_111007.2| Arabidopsis thaliana nuclease/ nucleic acid binding / ribonuclease
           H AT3G01410 mRNA, complete cds
          Length = 1256

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                             
Query: 441 acagctccagcacctgattttcctgggtttccttttgaagcaccatcaaa 490
           |||||||| ||||| |  || |||||||||||||| ||||||||||||||
Sbjct: 684 acagctcctgcaccagccttccctgggtttcctttagaagcaccatcaaa 635
to top
>gb|AC010870.6|ATAC010870 Arabidopsis thaliana chromosome III BAC T13O15 genomic sequence,
             complete sequence
          Length = 86324

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                               
Query: 441   acagctccagcacctgattttcctgggtttccttttgaagcaccatcaaa 490
             |||||||| ||||| |  || |||||||||||||| ||||||||||||||
Sbjct: 57268 acagctcctgcaccagccttccctgggtttcctttagaagcaccatcaaa 57317
to top
>gb|BT010430.1| Arabidopsis thaliana At3g01410 mRNA, complete cds
          Length = 885

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                             
Query: 441 acagctccagcacctgattttcctgggtttccttttgaagcaccatcaaa 490
           |||||||| ||||| |  || |||||||||||||| ||||||||||||||
Sbjct: 524 acagctcctgcaccagccttccctgggtttcctttagaagcaccatcaaa 475
to top
>dbj|AK176396.1| Arabidopsis thaliana mRNA for putative RNase H, complete cds,
           clone: RAFL24-10-J05
          Length = 1367

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                             
Query: 441 acagctccagcacctgattttcctgggtttccttttgaagcaccatcaaa 490
           |||||||| ||||| |  || |||||||||||||| ||||||||||||||
Sbjct: 702 acagctcctgcaccagccttccctgggtttcctttagaagcaccatcaaa 653
to top
>emb|AL845430.12| Mouse DNA sequence from clone RP23-402L5 on chromosome 2, complete
              sequence
          Length = 201232

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 579    gaggaccttggtttggcttccagc 602
              ||||||||||||||||||||||||
Sbjct: 169564 gaggaccttggtttggcttccagc 169541
to top
>gb|BT017897.1| Zea mays clone EL01N0515G04.c mRNA sequence
          Length = 1433

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 444 gctccagcacctgattttcctgggtttccttttgaagcaccatcaaa 490
           ||||||||||| | ||| ||||| |||||||| || |||||||||||
Sbjct: 766 gctccagcaccggctttccctggatttcctttagaggcaccatcaaa 720
to top
>gb|AY104723.1| Zea mays PCO115255 mRNA sequence
          Length = 1053

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 444 gctccagcacctgattttcctgggtttccttttgaagcaccatcaaa 490
           ||||||||||| | ||| ||||| |||||||| || |||||||||||
Sbjct: 740 gctccagcaccggctttccctggatttcctttagaggcaccatcaaa 694
to top
>ref|XM_462905.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3789

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 284  tagttgagagtcaccatatac 304
            |||||||||||||||||||||
Sbjct: 2448 tagttgagagtcaccatatac 2428
to top
>gb|AC149223.2| Mus musculus BAC clone RP23-203K1 from chromosome 18, complete sequence
          Length = 202991

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 508    tatattgttttgagacaggtt 528
              |||||||||||||||||||||
Sbjct: 170992 tatattgttttgagacaggtt 171012
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 284      tagttgagagtcaccatatac 304
                |||||||||||||||||||||
Sbjct: 19897163 tagttgagagtcaccatatac 19897183
to top
>gb|AC140980.3| Mus musculus BAC clone RP24-255K12 from chromosome 18, complete
             sequence
          Length = 186798

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 508   tatattgttttgagacaggtt 528
             |||||||||||||||||||||
Sbjct: 72465 tatattgttttgagacaggtt 72485
to top
>gb|AC146308.2| Medicago truncatula clone mth2-10a12, complete sequence
          Length = 112733

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                      
Query: 447   ccagcacctgattttcctgggtttccttttgaagcaccatc 487
             |||||||| | |||||| || ||||||||||| ||||||||
Sbjct: 29501 ccagcaccagcttttccaggatttccttttgacgcaccatc 29461
to top
>emb|AL121904.13|HSDJ410C9 Human DNA sequence from clone RP3-410C9 on chromosome 20 Contains two
             novel genes and two CpG islands, complete sequence
          Length = 109849

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 299   atatactttgattctcttgaa 319
             |||||||||||||||||||||
Sbjct: 58303 atatactttgattctcttgaa 58323
to top
>emb|AL022576.2|HS20J23 Human DNA sequence from clone RP1-20J23 on chromosome Xq26.2-27.2
              Contains a ras-related C3 botulinum toxin substrate 1 (rho
              family, small GTP binding protein Rac1) (RAC1) pseudogene
              (LOC286472) and a CpG island, complete sequence
          Length = 137111

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 454    ctgattttcctgggtttccttttga 478
              |||||||||||||||| ||||||||
Sbjct: 110891 ctgattttcctgggttgccttttga 110915
to top
>gb|AC164290.4| Mus musculus BAC clone RP23-385O17 from chromosome 18, complete sequence
          Length = 205629

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 508    tatattgttttgagacaggtt 528
              |||||||||||||||||||||
Sbjct: 196425 tatattgttttgagacaggtt 196405
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 284      tagttgagagtcaccatatac 304
                |||||||||||||||||||||
Sbjct: 19890191 tagttgagagtcaccatatac 19890211
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
              complete sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 506    catatattgttttgagacaggttgt 530
              ||||| |||||||||||||||||||
Sbjct: 534250 catatgttgttttgagacaggttgt 534226
to top
>gb|AC005230.1|AC005230 Homo sapiens PAC clone RP5-1163L11 from 14q24.3, complete sequence
          Length = 112902

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 208   gttttctcacttctttgcaca 228
             |||||||||||||||||||||
Sbjct: 95880 gttttctcacttctttgcaca 95900
to top
>gb|AC090714.9| Oryza sativa chromosome 3 BAC OSJNBb0031G04 genomic sequence, complete
             sequence
          Length = 137297

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 284   tagttgagagtcaccatatac 304
             |||||||||||||||||||||
Sbjct: 49452 tagttgagagtcaccatatac 49472
to top
>dbj|AP004752.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0501G04
          Length = 156603

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 506   catatattgttttgagacaggttgt 530
             ||||| |||||||||||||||||||
Sbjct: 12303 catatgttgttttgagacaggttgt 12279
to top
>dbj|AP004769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0017C12
          Length = 135356

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 506    catatattgttttgagacaggttgt 530
              ||||| |||||||||||||||||||
Sbjct: 130491 catatgttgttttgagacaggttgt 130467
to top
>emb|AL445903.3|CNS07EEU Human chromosome 14 DNA sequence BAC R-164G17 of library RPCI-11 from
            chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 145556

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 208  gttttctcacttctttgcaca 228
            |||||||||||||||||||||
Sbjct: 7474 gttttctcacttctttgcaca 7494
to top
>gb|AC126554.3| Mus musculus BAC clone RP23-465O13 from 12, complete sequence
          Length = 186243

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 512    ttgttttgagacaggttgtgc 532
              |||||||||||||||||||||
Sbjct: 112321 ttgttttgagacaggttgtgc 112341
to top
>gb|AC147783.13| Mus musculus chromosome 12, clone RP23-256M6, complete sequence
          Length = 212734

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 512    ttgttttgagacaggttgtgc 532
              |||||||||||||||||||||
Sbjct: 107235 ttgttttgagacaggttgtgc 107215
to top
>emb|AL590389.8| Mouse DNA sequence from clone RP23-393F23 on chromosome 2, complete
              sequence
          Length = 207901

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 579    gaggaccttggtttggcttcc 599
              |||||||||||||||||||||
Sbjct: 158649 gaggaccttggtttggcttcc 158669
to top
>gb|AC152952.1| Mus musculus 6 BAC RP23-86B3 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 187484

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 182    ctcaaaagagatgaagttct 201
              ||||||||||||||||||||
Sbjct: 163130 ctcaaaagagatgaagttct 163149
to top
>gb|AC158953.8| Mus musculus chromosome 3, clone RP23-437C24, complete sequence
          Length = 204136

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 574  aactggaggaccttggtttg 593
            ||||||||||||||||||||
Sbjct: 3314 aactggaggaccttggtttg 3333
to top
>gb|AC164077.5| Mus musculus chromosome 3, clone RP24-352M15, complete sequence
          Length = 159925

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 574    aactggaggaccttggtttg 593
              ||||||||||||||||||||
Sbjct: 129908 aactggaggaccttggtttg 129927
to top
>gb|AC135359.2| Mus musculus BAC clone RP24-209E17 from chromosome 5, complete
            sequence
          Length = 199822

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 559  tatttggtgaggaataactg 578
            ||||||||||||||||||||
Sbjct: 9544 tatttggtgaggaataactg 9563
to top
>gb|AC134586.4| Mus musculus BAC clone RP23-304K3 from chromosome 9, complete sequence
          Length = 166474

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 583   accttggtttggcttccagc 602
             ||||||||||||||||||||
Sbjct: 93030 accttggtttggcttccagc 93011
to top
>gb|AC124720.3| Mus musculus BAC clone RP23-387F14 from chromosome 5, complete sequence
          Length = 193210

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 559   tatttggtgaggaataactg 578
             ||||||||||||||||||||
Sbjct: 49855 tatttggtgaggaataactg 49836
to top
>emb|BX936420.9| Zebrafish DNA sequence from clone DKEY-7F16 in linkage group 3, complete
              sequence
          Length = 168285

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 493    gaacaacacataccatatat 512
              ||||||||||||||||||||
Sbjct: 112045 gaacaacacataccatatat 112026
to top
>gb|AC004932.4| Homo sapiens PAC clone RP5-943F2 from 7, complete sequence
          Length = 151183

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 230   ttccatcatgttctctttct 249
             ||||||||||||||||||||
Sbjct: 57769 ttccatcatgttctctttct 57750
to top
>ref|XM_541477.2| PREDICTED: Canis familiaris similar to leucine rich repeat
           containing 4B (LOC484361), mRNA
          Length = 2620

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 235 tcatgttctctttctttgct 254
           ||||||||||||||||||||
Sbjct: 236 tcatgttctctttctttgct 217
to top
>ref|XM_662079.1| Cryptosporidium hominis TU502 cytoskeletal protein (Chro.20307)
            partial mRNA
          Length = 1785

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 193  tgaagttctcttgaagtttt 212
            ||||||||||||||||||||
Sbjct: 1606 tgaagttctcttgaagtttt 1587
to top
>gb|AC124037.5| Mus Musculus chromosome 4 BAC, clone CT7-104L5 strain 129Sv ES cell
            line, Complete Sequence, complete sequence
          Length = 134412

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 579  gaggaccttggtttggcttccagc 602
            |||||||| |||||||||||||||
Sbjct: 4420 gaggacctgggtttggcttccagc 4397
to top
>gb|AC111062.13| Mus musculus chromosome 3, clone RP24-100J21, complete sequence
          Length = 214132

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 574    aactggaggaccttggtttg 593
              ||||||||||||||||||||
Sbjct: 147100 aactggaggaccttggtttg 147081
to top
>emb|AL589701.9| Mouse DNA sequence from clone RP23-202F3 on chromosome 13 Contains a
             novel gene and the 3' end of a novel gene (1190005B03Rik),
             complete sequence
          Length = 219200

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 578   ggaggaccttggtttggcttccag 601
             ||||||||||||||||| ||||||
Sbjct: 15584 ggaggaccttggtttggtttccag 15607
to top
>gb|AC104164.2| Homo sapiens chromosome 3 clone RP11-641C17, complete sequence
          Length = 197483

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 236    catgttctctttctttgctt 255
              ||||||||||||||||||||
Sbjct: 102373 catgttctctttctttgctt 102392
to top
>emb|BX677663.6| Zebrafish DNA sequence from clone DKEY-76N12 in linkage group 2, complete
              sequence
          Length = 143503

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 199    tctcttgaagttttctcacttctt 222
              ||||||||| ||||||||||||||
Sbjct: 121353 tctcttgaaattttctcacttctt 121330
to top
>ref|XM_626490.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd2_2930),
            partial mRNA
          Length = 1785

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 193  tgaagttctcttgaagtttt 212
            ||||||||||||||||||||
Sbjct: 1606 tgaagttctcttgaagtttt 1587
to top
>emb|AL928869.11| Mouse DNA sequence from clone RP23-393F9 on chromosome 2, complete
             sequence
          Length = 97022

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 508   tatattgttttgagacaggt 527
             ||||||||||||||||||||
Sbjct: 52247 tatattgttttgagacaggt 52228
to top
>gb|AC117394.10| Homo sapiens 3 BAC RP11-529G21 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 198170

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 195   aagttctcttgaagttttct 214
             ||||||||||||||||||||
Sbjct: 33967 aagttctcttgaagttttct 33948
to top
>gb|AC141643.4| Mus musculus BAC clone RP23-198F6 from chromosome 7, complete sequence
          Length = 237233

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 238   tgttctctttctttgcttgc 257
             ||||||||||||||||||||
Sbjct: 13539 tgttctctttctttgcttgc 13558
to top
>gb|AC107822.18| Mus musculus chromosome 7, clone RP23-182C11, complete sequence
          Length = 220443

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 238   tgttctctttctttgcttgc 257
             ||||||||||||||||||||
Sbjct: 24355 tgttctctttctttgcttgc 24336
to top
>emb|BX000437.7| Zebrafish DNA sequence from clone DKEY-106O5 in linkage group 5,
             complete sequence
          Length = 178961

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 298   catatactttgattctcttg 317
             ||||||||||||||||||||
Sbjct: 39418 catatactttgattctcttg 39437
to top
>gb|U66722.1|HSU66722 Human chromosome 3p14.2 fragile site FRA3B sequence
          Length = 110434

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 236   catgttctctttctttgctt 255
             ||||||||||||||||||||
Sbjct: 89444 catgttctctttctttgctt 89425
to top
>gb|AY609577.1| Sus scrofa clone Clu_194599.scr.msk.p1.Contig2, mRNA sequence
          Length = 1043

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 225 cacagttccatcatgttctctttctttg 252
           |||||||||||||||||  |||||||||
Sbjct: 851 cacagttccatcatgtttactttctttg 824
to top
>gb|AC132614.3| Mus musculus BAC clone RP23-298K1 from 6, complete sequence
          Length = 198160

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 182   ctcaaaagagatgaagttct 201
             ||||||||||||||||||||
Sbjct: 17919 ctcaaaagagatgaagttct 17938
to top
>emb|AL672274.7| Mouse DNA sequence from clone RP23-351G20 on chromosome X, complete
              sequence
          Length = 189982

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 509    atattgttttgagacaggtt 528
              ||||||||||||||||||||
Sbjct: 139103 atattgttttgagacaggtt 139084
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>emb|AL671866.8| Mouse DNA sequence from clone RP23-59L24 on chromosome 4, complete
              sequence
          Length = 230447

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 579    gaggaccttggtttggcttccagc 602
              |||||||| |||||||||||||||
Sbjct: 165224 gaggacctgggtttggcttccagc 165247
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>emb|AL646049.14| Mouse DNA sequence from clone RP23-63A9 on chromosome X, complete
             sequence
          Length = 146105

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 512   ttgttttgagacaggttgtg 531
             ||||||||||||||||||||
Sbjct: 55972 ttgttttgagacaggttgtg 55991


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,777,602
Number of Sequences: 3902068
Number of extensions: 6777602
Number of successful extensions: 154240
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 153818
Number of HSP's gapped (non-prelim): 418
length of query: 700
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 677
effective length of database: 17,143,297,704
effective search space: 11606012545608
effective search space used: 11606012545608
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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