ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5p19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AB164680.1| Hordeum vulgare HVD1 mRNA for ATP-dependent RNA ... 1283 0.0
2gb|AY105041.1| Zea mays PCO121445 mRNA sequence 56 2e-04
3ref|NM_185120.1| Oryza sativa (japonica cultivar-group), mRNA 52 0.002
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 52 0.002
5gb|AC096687.5| Oryza sativa chromosome 3 BAC OSJNBa0010E04 genom... 52 0.002
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
7dbj|AK065849.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
8dbj|AK062046.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
9emb|AL590464.1|SCO590464 Streptomyces coelicolor plasmid SCP1; s... 44 0.60
10emb|AL590463.1|SCO590463 Streptomyces coelicolor plasmid SCP1; s... 44 0.60
11gb|AC153923.4| Mus musculus 6 BAC RP23-82I13 (Roswell Park Cance... 44 0.60
12dbj|AP007294.1| Lotus japonicus genomic DNA, clone:LjT42E17, TM0... 44 0.60
13emb|BX322234.7| Human DNA sequence from clone XXyac-65C7_A on ch... 42 2.4
14emb|AL133385.8| Human DNA sequence from clone RP1-81E11 on chrom... 42 2.4
15ref|XM_715237.1| Candida albicans SC5314 hypothetical protein (Y... 40 9.4
16ref|XM_883617.1| Candida albicans SC5314 hypothetical protein (C... 40 9.4
17gb|AC078791.8| Homo sapiens BAC clone RP11-211J15 from 7, comple... 40 9.4
18gb|AC093649.4| Homo sapiens BAC clone RP11-360A17 from 7, comple... 40 9.4
19gb|AC146154.3| Pan troglodytes BAC clone RP43-37E8 from 7, compl... 40 9.4
20emb|AL512272.15| Human DNA sequence from clone RP11-310M21 on ch... 40 9.4
21gb|AE012109.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 9.4
22gb|AC090448.5| Homo sapiens chromosome 8, clone RP11-142M8, comp... 40 9.4
23gb|AC012213.8| Homo sapiens chromosome , clone RP11-1C8, complet... 40 9.4
24gb|CP000264.1| Jannaschia sp. CCS1, complete genome 40 9.4
25gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 9.4
26gb|AC012509.13| Homo sapiens BAC clone RP11-532A9 from 2, comple... 40 9.4
27gb|AC090644.2| Homo sapiens chromosome 3 clone RP11-322M13 map 3... 40 9.4
28gb|AC153593.4| Mus musculus 6 BAC RP23-131B11 (Roswell Park Canc... 40 9.4
29emb|AJ390499.1|CAL390499 Candida albicans yae1 gene for essentia... 40 9.4
30gb|AC132443.3| Mus musculus BAC clone RP23-157C23 from 6, comple... 40 9.4
31dbj|AP006852.1| Candida albicans genomic DNA, chromosome 7, comp... 40 9.4
32dbj|AP004288.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 9.4 
>dbj|AB164680.1| Hordeum vulgare HVD1 mRNA for ATP-dependent RNA helicase, complete
            cds
          Length = 2799

 Score = 1283 bits (647), Expect = 0.0
 Identities = 677/687 (98%), Gaps = 2/687 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    atagaactttacagggncccatgtagtagtagctgttgttaacattctatcaccaactcc 60
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2739 atagaactttacaggg-cccatgtagtagtagctgttgttaacattctatcaccaactcc 2681

                                                                        
Query: 61   gacaagcggcaaaccnnnnnnnnttaaaacaagcaacgttcctgtaaaacccctagatat 120
            |||||||||||||||        |||||||||||||||||||||||||||||||||||||
Sbjct: 2680 gacaagcggcaaaccaaaaaaaattaaaacaagcaacgttcctgtaaaacccctagatat 2621

                                                                        
Query: 121  tacacgaataattcagcggaaggccaggctctccttcggcgtgtcagcagcgtgccagaa 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2620 tacacgaataattcagcggaaggccaggctctccttcggcgtgtcagcagcgtgccagaa 2561

                                                                        
Query: 181  aaatcatctcctctgtgaaacgacgaccacacaaaactgtagtagtatctagcacagcca 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2560 aaatcatctcctctgtgaaacgacgaccacacaaaactgtagtagtatctagcacagcca 2501

                                                                        
Query: 241  gccgttcatcgggcatatgcagatcacagatcgacacacaagggaggccggccttgcgat 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2500 gccgttcatcgggcatatgcagatcacagatcgacacacaagggaggccggccttgcgat 2441

                                                                        
Query: 301  gttccttggcgttgtgttcagctttgtccagccgcttgtcggaagctgatgaggcccgaa 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2440 gttccttggcgttgtgttcagctttgtccagccgcttgtcggaagctgatgaggcccgaa 2381

                                                                        
Query: 361  cggagcagcgcggcaggcaagcagcacttcgtatgcgccgtctacttgttcgggcagtct 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2380 cggagcagcgcggcaggcaagcagcacttcgtatgcgccgtctacttgttcgggcagtct 2321

                                                                        
Query: 421  gatgctctgtgccctgattgcccgcatgtgaagcacgcgccactgaagcttctgtccctg 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2320 gatgctctgtgccctgattgcccgcatgtgaagcacgcgccactgaagcttctgtccctg 2261

                                                                        
Query: 481  ctgccaaaggacgagccaccgcgaccaccgtatgacgatgagcgttcaccaaaggaggag 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2260 ctgccaaaggacgagccaccgcgaccaccgtatgacgatgagcgttcaccaaaggaggag 2201

                                                                        
Query: 541  gatctgtcaccgaaggatgacgagccaccacgcccaccataggacgagcggccaccgctg 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2200 gatctgtcaccgaaggatgacgagccaccacgcccaccataggacgagcggccaccgctg 2141

                                                                        
Query: 601  ggggatgacgaacggtttgatcttctcgcaccaccacctgaaaagtcatcatctgaccaa 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2140 ggggatgacgaacggtttgatcttctcgcaccaccacctgaaaagtcatcatctgaccaa 2081

                                       
Query: 661  atgtcgttgtcagggtctgctggagct 687
            |||||||||||| ||||||||||||||
Sbjct: 2080 atgtcgttgtca-ggtctgctggagct 2055
to top
>gb|AY105041.1| Zea mays PCO121445 mRNA sequence
          Length = 1788

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 60/70 (85%), Gaps = 3/70 (4%)
 Strand = Plus / Minus

                                                                        
Query: 604  gatgacgaacggtttgatcttctcgcaccaccacctgaaaagtcatcatctgaccaaatg 663
            ||||| |||||||||||| |||||   ||||| |||||  ||||||||||||||||| ||
Sbjct: 1444 gatgaggaacggtttgattttctc---ccaccgcctgaccagtcatcatctgaccaactg 1388

                      
Query: 664  tcgttgtcag 673
            || |||||||
Sbjct: 1387 tcattgtcag 1378
to top
>ref|NM_185120.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2719

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                              
Query: 401  tctacttgttcgggcagtctgatgctctgtgccc 434
            |||||||||| |||||||||||||||| ||||||
Sbjct: 2278 tctacttgtttgggcagtctgatgctcggtgccc 2245



 Score = 48.1 bits (24), Expect = 0.039
 Identities = 59/71 (83%), Gaps = 6/71 (8%)
 Strand = Plus / Minus

                                                                        
Query: 603  ggatgacgaacggtttgatcttctcgcaccaccacctgaaaagtcatcatctgaccaaat 662
            ||||||||||||||| ||||||||| | |||||      ||||||||||||||||||| |
Sbjct: 2118 ggatgacgaacggttcgatcttctcccgccacc------aaagtcatcatctgaccaact 2065

                       
Query: 663  gtcgttgtcag 673
             || |||||||
Sbjct: 2064 atcattgtcag 2054
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                  
Query: 401      tctacttgttcgggcagtctgatgctctgtgccc 434
                |||||||||| |||||||||||||||| ||||||
Sbjct: 34467969 tctacttgtttgggcagtctgatgctcggtgccc 34467936



 Score = 48.1 bits (24), Expect = 0.039
 Identities = 59/71 (83%), Gaps = 6/71 (8%)
 Strand = Plus / Minus

                                                                            
Query: 603      ggatgacgaacggtttgatcttctcgcaccaccacctgaaaagtcatcatctgaccaaat 662
                ||||||||||||||| ||||||||| | |||||      ||||||||||||||||||| |
Sbjct: 34467392 ggatgacgaacggttcgatcttctcccgccacc------aaagtcatcatctgaccaact 34467339

                           
Query: 663      gtcgttgtcag 673
                 || |||||||
Sbjct: 34467338 atcattgtcag 34467328
to top
>gb|AC096687.5| Oryza sativa chromosome 3 BAC OSJNBa0010E04 genomic sequence, complete
             sequence
          Length = 117505

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                               
Query: 401   tctacttgttcgggcagtctgatgctctgtgccc 434
             |||||||||| |||||||||||||||| ||||||
Sbjct: 58198 tctacttgtttgggcagtctgatgctcggtgccc 58231



 Score = 48.1 bits (24), Expect = 0.039
 Identities = 59/71 (83%), Gaps = 6/71 (8%)
 Strand = Plus / Plus

                                                                         
Query: 603   ggatgacgaacggtttgatcttctcgcaccaccacctgaaaagtcatcatctgaccaaat 662
             ||||||||||||||| ||||||||| | |||||      ||||||||||||||||||| |
Sbjct: 58775 ggatgacgaacggttcgatcttctcccgccacc------aaagtcatcatctgaccaact 58828

                        
Query: 663   gtcgttgtcag 673
              || |||||||
Sbjct: 58829 atcattgtcag 58839
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                  
Query: 401      tctacttgttcgggcagtctgatgctctgtgccc 434
                |||||||||| |||||||||||||||| ||||||
Sbjct: 34558041 tctacttgtttgggcagtctgatgctcggtgccc 34558008



 Score = 48.1 bits (24), Expect = 0.039
 Identities = 59/71 (83%), Gaps = 6/71 (8%)
 Strand = Plus / Minus

                                                                            
Query: 603      ggatgacgaacggtttgatcttctcgcaccaccacctgaaaagtcatcatctgaccaaat 662
                ||||||||||||||| ||||||||| | |||||      ||||||||||||||||||| |
Sbjct: 34557464 ggatgacgaacggttcgatcttctcccgccacc------aaagtcatcatctgaccaact 34557411

                           
Query: 663      gtcgttgtcag 673
                 || |||||||
Sbjct: 34557410 atcattgtcag 34557400
to top
>dbj|AK065849.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043E01, full
            insert sequence
          Length = 2728

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                              
Query: 401  tctacttgttcgggcagtctgatgctctgtgccc 434
            |||||||||| |||||||||||||||| ||||||
Sbjct: 2301 tctacttgtttgggcagtctgatgctcggtgccc 2268



 Score = 48.1 bits (24), Expect = 0.039
 Identities = 59/71 (83%), Gaps = 6/71 (8%)
 Strand = Plus / Minus

                                                                        
Query: 603  ggatgacgaacggtttgatcttctcgcaccaccacctgaaaagtcatcatctgaccaaat 662
            ||||||||||||||| ||||||||| | |||||      ||||||||||||||||||| |
Sbjct: 2141 ggatgacgaacggttcgatcttctcccgccacc------aaagtcatcatctgaccaact 2088

                       
Query: 663  gtcgttgtcag 673
             || |||||||
Sbjct: 2087 atcattgtcag 2077
to top
>dbj|AK062046.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-A10, full
            insert sequence
          Length = 1728

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                              
Query: 401  tctacttgttcgggcagtctgatgctctgtgccc 434
            |||||||||| |||||||||||||||| ||||||
Sbjct: 1299 tctacttgtttgggcagtctgatgctcggtgccc 1266



 Score = 48.1 bits (24), Expect = 0.039
 Identities = 59/71 (83%), Gaps = 6/71 (8%)
 Strand = Plus / Minus

                                                                        
Query: 603  ggatgacgaacggtttgatcttctcgcaccaccacctgaaaagtcatcatctgaccaaat 662
            ||||||||||||||| ||||||||| | |||||      ||||||||||||||||||| |
Sbjct: 1139 ggatgacgaacggttcgatcttctcccgccacc------aaagtcatcatctgaccaact 1086

                       
Query: 663  gtcgttgtcag 673
             || |||||||
Sbjct: 1085 atcattgtcag 1075
to top
>emb|AL590464.1|SCO590464 Streptomyces coelicolor plasmid SCP1; segment 2/2
          Length = 178073

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 541    gatctgtcaccgaaggatgacg 562
              ||||||||||||||||||||||
Sbjct: 164161 gatctgtcaccgaaggatgacg 164182
to top
>emb|AL590463.1|SCO590463 Streptomyces coelicolor plasmid SCP1; segment 1/2
          Length = 178000

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 541   gatctgtcaccgaaggatgacg 562
             ||||||||||||||||||||||
Sbjct: 13913 gatctgtcaccgaaggatgacg 13892
to top
>gb|AC153923.4| Mus musculus 6 BAC RP23-82I13 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 248275

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 412    gggcagtctgatgctctgtgcc 433
              ||||||||||||||||||||||
Sbjct: 187396 gggcagtctgatgctctgtgcc 187375
to top
>dbj|AP007294.1| Lotus japonicus genomic DNA, clone:LjT42E17, TM0355, complete sequence
          Length = 124602

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 633   accacctgaaaagtcatcatct 654
             ||||||||||||||||||||||
Sbjct: 43850 accacctgaaaagtcatcatct 43871
to top
>emb|BX322234.7| Human DNA sequence from clone XXyac-65C7_A on chromosome 6 Contains the
             THBS2 gene for thrombospondin 2, two novel genes, a
             chromosome 6 open reading frame 55 (C6orf55) pseudogene
             and two CpG islands, complete sequence
          Length = 159175

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 274   acacacaagggaggccggccttgcg 298
             |||||||||| ||||||||||||||
Sbjct: 43616 acacacaaggaaggccggccttgcg 43640
to top
>emb|AL133385.8| Human DNA sequence from clone RP1-81E11 on chromosome X, complete
             sequence
          Length = 45848

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 24    tagtagtagctgttgttaacattct 48
             ||||||||| |||||||||||||||
Sbjct: 12839 tagtagtagttgttgttaacattct 12815
to top
>ref|XM_715237.1| Candida albicans SC5314 hypothetical protein (YAE1) partial mRNA
          Length = 543

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 646 tcatcatctgaccaaatgtc 665
           ||||||||||||||||||||
Sbjct: 152 tcatcatctgaccaaatgtc 133
to top
>ref|XM_883617.1| Candida albicans SC5314 hypothetical protein (CaJ7.0095) partial
           mRNA
          Length = 543

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 646 tcatcatctgaccaaatgtc 665
           ||||||||||||||||||||
Sbjct: 152 tcatcatctgaccaaatgtc 133
to top
>gb|AC078791.8| Homo sapiens BAC clone RP11-211J15 from 7, complete sequence
          Length = 83898

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 180 aaaatcatctcctctgtgaa 199
           ||||||||||||||||||||
Sbjct: 256 aaaatcatctcctctgtgaa 275
to top
>gb|AC093649.4| Homo sapiens BAC clone RP11-360A17 from 7, complete sequence
          Length = 16811

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 180   aaaatcatctcctctgtgaa 199
             ||||||||||||||||||||
Sbjct: 15067 aaaatcatctcctctgtgaa 15086
to top
>gb|AC146154.3| Pan troglodytes BAC clone RP43-37E8 from 7, complete sequence
          Length = 240699

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 180  aaaatcatctcctctgtgaa 199
            ||||||||||||||||||||
Sbjct: 1211 aaaatcatctcctctgtgaa 1230
to top
>emb|AL512272.15| Human DNA sequence from clone RP11-310M21 on chromosome 10, complete
             sequence
          Length = 127651

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 211   acaaaactgtagtagtatctagcacagc 238
             ||||||||||||||||| | ||||||||
Sbjct: 97915 acaaaactgtagtagtaacaagcacagc 97942
to top
>gb|AE012109.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 17 of
             460 of the complete genome
          Length = 11866

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 373   gcaggcaagcagcacttcgtatgcgccg 400
             |||||||||||||||||| || ||||||
Sbjct: 11578 gcaggcaagcagcacttcatacgcgccg 11551
to top
>gb|AC090448.5| Homo sapiens chromosome 8, clone RP11-142M8, complete sequence
          Length = 82020

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 562   gagccaccacgcccaccata 581
             ||||||||||||||||||||
Sbjct: 24270 gagccaccacgcccaccata 24289
to top
>gb|AC012213.8| Homo sapiens chromosome , clone RP11-1C8, complete sequence
          Length = 176922

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 562   gagccaccacgcccaccata 581
             ||||||||||||||||||||
Sbjct: 25672 gagccaccacgcccaccata 25653
to top
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 646    tcatcatctgaccaaatgtcgttg 669
              |||||||||||||||| |||||||
Sbjct: 418723 tcatcatctgaccaaaggtcgttg 418746
to top
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 373    gcaggcaagcagcacttcgtatgcgccg 400
              |||||||||||||||||| || ||||||
Sbjct: 187010 gcaggcaagcagcacttcatacgcgccg 186983
to top
>gb|AC012509.13| Homo sapiens BAC clone RP11-532A9 from 2, complete sequence
          Length = 209877

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 23    gtagtagtagctgttgttaacatt 46
             ||||||||||||||||||| ||||
Sbjct: 45424 gtagtagtagctgttgttatcatt 45401
to top
>gb|AC090644.2| Homo sapiens chromosome 3 clone RP11-322M13 map 3p, complete sequence
          Length = 201414

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    agctgttgttaacattctat 50
             ||||||||||||||||||||
Sbjct: 73822 agctgttgttaacattctat 73841
to top
>gb|AC153593.4| Mus musculus 6 BAC RP23-131B11 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 205164

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 304   ccttggcgttgtgttcagct 323
             ||||||||||||||||||||
Sbjct: 59922 ccttggcgttgtgttcagct 59903
to top
>emb|AJ390499.1|CAL390499 Candida albicans yae1 gene for essential YAE1 protein
          Length = 543

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 646 tcatcatctgaccaaatgtc 665
           ||||||||||||||||||||
Sbjct: 152 tcatcatctgaccaaatgtc 133
to top
>gb|AC132443.3| Mus musculus BAC clone RP23-157C23 from 6, complete sequence
          Length = 179231

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 304  ccttggcgttgtgttcagct 323
            ||||||||||||||||||||
Sbjct: 4831 ccttggcgttgtgttcagct 4850
to top
>dbj|AP006852.1| Candida albicans genomic DNA, chromosome 7, complete sequence
          Length = 949626

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 646    tcatcatctgaccaaatgtc 665
              ||||||||||||||||||||
Sbjct: 153738 tcatcatctgaccaaatgtc 153757
to top
>dbj|AP004288.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1735D4
          Length = 212373

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 562   gagccaccacgcccaccata 581
             ||||||||||||||||||||
Sbjct: 86676 gagccaccacgcccaccata 86695


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,999,391
Number of Sequences: 3902068
Number of extensions: 4999391
Number of successful extensions: 124125
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 123911
Number of HSP's gapped (non-prelim): 211
length of query: 687
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 664
effective length of database: 17,143,297,704
effective search space: 11383149675456
effective search space used: 11383149675456
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top