ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags5p17 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB007627.2| Oryza sativa (japonica cultivar-group) HOS58 mRNA, complete cds Length = 1105 Score = 85.7 bits (43), Expect = 9e-14 Identities = 72/82 (87%) Strand = Plus / Minus Query: 286 tctaccacgattgctccgngccgtcattacctgtaacgtttcttttcttcttggtttttt 345 |||||||||||||||| | || ||| ||||||||||||||||||||||||||| |||| Sbjct: 662 tctaccacgattgctcagcaccaccatcacctgtaacgtttcttttcttcttggtctttt 603 Query: 346 cactagaggaagctgtgttgct 367 ||| |||||| |||| |||||| Sbjct: 602 caccagaggatgctgggttgct 581 Score = 42.1 bits (21), Expect = 1.3 Identities = 43/49 (87%), Gaps = 1/49 (2%) Strand = Plus / Minus Query: 8 acaagtacatacaccaatgcaatgctcccttccgttcctcggttataca 56 |||| ||||||||| ||| |||| || |||||||||| ||||||||||| Sbjct: 961 acaattacatacac-aatacaattcttccttccgttcatcggttataca 914
>dbj|AB061817.1| Oryza sativa (japonica cultivar-group) HOS58 mRNA for KNOX family class 2 homeodomain protein, partial cds Length = 1085 Score = 85.7 bits (43), Expect = 9e-14 Identities = 72/82 (87%) Strand = Plus / Minus Query: 286 tctaccacgattgctccgngccgtcattacctgtaacgtttcttttcttcttggtttttt 345 |||||||||||||||| | || ||| ||||||||||||||||||||||||||| |||| Sbjct: 642 tctaccacgattgctcagcaccaccatcacctgtaacgtttcttttcttcttggtctttt 583 Query: 346 cactagaggaagctgtgttgct 367 ||| |||||| |||| |||||| Sbjct: 582 caccagaggatgctgggttgct 561 Score = 42.1 bits (21), Expect = 1.3 Identities = 43/49 (87%), Gaps = 1/49 (2%) Strand = Plus / Minus Query: 8 acaagtacatacaccaatgcaatgctcccttccgttcctcggttataca 56 |||| ||||||||| ||| |||| || |||||||||| ||||||||||| Sbjct: 941 acaattacatacac-aatacaattcttccttccgttcatcggttataca 894
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 50.1 bits (25), Expect = 0.005 Identities = 37/41 (90%) Strand = Plus / Minus Query: 327 cttttcttcttggttttttcactagaggaagctgtgttgct 367 |||||||||||||| ||||||| |||||| |||| |||||| Sbjct: 4628265 cttttcttcttggtcttttcaccagaggatgctgggttgct 4628225 Score = 46.1 bits (23), Expect = 0.081 Identities = 40/46 (86%) Strand = Plus / Minus Query: 286 tctaccacgattgctccgngccgtcattacctgtaacgtttctttt 331 |||||||||||||||| | || ||| |||||||||||||||||| Sbjct: 4628404 tctaccacgattgctcagcaccaccatcacctgtaacgtttctttt 4628359 Score = 42.1 bits (21), Expect = 1.3 Identities = 43/49 (87%), Gaps = 1/49 (2%) Strand = Plus / Minus Query: 8 acaagtacatacaccaatgcaatgctcccttccgttcctcggttataca 56 |||| ||||||||| ||| |||| || |||||||||| ||||||||||| Sbjct: 4628703 acaattacatacac-aatacaattcttccttccgttcatcggttataca 4628656 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 tatactgcagcactcttcat 237 |||||||||||||||||||| Sbjct: 2083885 tatactgcagcactcttcat 2083866
>dbj|AP004066.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1572_F02 Length = 93626 Score = 50.1 bits (25), Expect = 0.005 Identities = 37/41 (90%) Strand = Plus / Minus Query: 327 cttttcttcttggttttttcactagaggaagctgtgttgct 367 |||||||||||||| ||||||| |||||| |||| |||||| Sbjct: 337 cttttcttcttggtcttttcaccagaggatgctgggttgct 297 Score = 46.1 bits (23), Expect = 0.081 Identities = 40/46 (86%) Strand = Plus / Minus Query: 286 tctaccacgattgctccgngccgtcattacctgtaacgtttctttt 331 |||||||||||||||| | || ||| |||||||||||||||||| Sbjct: 476 tctaccacgattgctcagcaccaccatcacctgtaacgtttctttt 431 Score = 42.1 bits (21), Expect = 1.3 Identities = 43/49 (87%), Gaps = 1/49 (2%) Strand = Plus / Minus Query: 8 acaagtacatacaccaatgcaatgctcccttccgttcctcggttataca 56 |||| ||||||||| ||| |||| || |||||||||| ||||||||||| Sbjct: 775 acaattacatacac-aatacaattcttccttccgttcatcggttataca 728
>emb|AL365436.26| Human DNA sequence from clone RP11-74C1 on chromosome 1 Contains the CGN gene for cingulin, the TUFT1 gene for tuftelin 1, a ribosomal protein S10 (RPS10) pseudogene and two CpG isalnds, complete sequence Length = 91830 Score = 48.1 bits (24), Expect = 0.021 Identities = 24/24 (100%) Strand = Plus / Minus Query: 191 agagaaagaggagagaggggtaga 214 |||||||||||||||||||||||| Sbjct: 34415 agagaaagaggagagaggggtaga 34392
>gb|AE014823.1| Plasmodium falciparum 3D7 chromosome 14 section 8 of 13 of the complete sequence Length = 249943 Score = 46.1 bits (23), Expect = 0.081 Identities = 23/23 (100%) Strand = Plus / Minus Query: 323 gtttcttttcttcttggtttttt 345 ||||||||||||||||||||||| Sbjct: 165641 gtttcttttcttcttggtttttt 165619
>gb|AC182012.3| Otolemur garnettii clone CH256-376P14, complete sequence Length = 224337 Score = 46.1 bits (23), Expect = 0.081 Identities = 26/27 (96%) Strand = Plus / Minus Query: 189 agagagaaagaggagagaggggtagag 215 |||||||||||||||||| |||||||| Sbjct: 120249 agagagaaagaggagagaagggtagag 120223
>gb|AC068669.21| Homo sapiens chromosome 17, clone RP11-749I16, complete sequence Length = 194780 Score = 46.1 bits (23), Expect = 0.081 Identities = 23/23 (100%) Strand = Plus / Minus Query: 187 ccagagagaaagaggagagaggg 209 ||||||||||||||||||||||| Sbjct: 69405 ccagagagaaagaggagagaggg 69383
>ref|XM_528702.1| PREDICTED: Pan troglodytes similar to RPGR-interacting protein 1 (LOC473331), mRNA Length = 3444 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 323 gtttcttttcttcttggttttt 344 |||||||||||||||||||||| Sbjct: 1666 gtttcttttcttcttggttttt 1645
>gb|AC159197.3| Mus musculus BAC clone RP23-421P10 from chromosome 12, complete sequence Length = 188400 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 189 agagagaaagaggagagagggg 210 |||||||||||||||||||||| Sbjct: 46009 agagagaaagaggagagagggg 46030
>gb|AC121079.20| Mus musculus chromosome 3, clone RP24-178P12, complete sequence Length = 177802 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 194 gaaagaggagagaggggtagag 215 |||||||||||||||||||||| Sbjct: 66474 gaaagaggagagaggggtagag 66453
>gb|BC039089.1| Homo sapiens retinitis pigmentosa GTPase regulator interacting protein 1, mRNA (cDNA clone IMAGE:5167577), complete cds Length = 2014 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 323 gtttcttttcttcttggttttt 344 |||||||||||||||||||||| Sbjct: 492 gtttcttttcttcttggttttt 471
>gb|AC104329.22| Mus musculus strain C57BL/6J clone rp23-418c12 map 3, complete sequence Length = 197096 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 194 gaaagaggagagaggggtagag 215 |||||||||||||||||||||| Sbjct: 159325 gaaagaggagagaggggtagag 159346
>gb|AC114971.2| Homo sapiens chromosome 5 clone RP11-3H15, complete sequence Length = 146463 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 188 cagagagaaagaggagagaggg 209 |||||||||||||||||||||| Sbjct: 63289 cagagagaaagaggagagaggg 63268
>ref|NM_020366.2| Homo sapiens retinitis pigmentosa GTPase regulator interacting protein 1 (RPGRIP1), mRNA Length = 3861 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 323 gtttcttttcttcttggttttt 344 |||||||||||||||||||||| Sbjct: 1501 gtttcttttcttcttggttttt 1480
>gb|AF260257.1|AF260257 Homo sapiens RPGR-interacting protein mRNA, complete cds Length = 2894 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 323 gtttcttttcttcttggttttt 344 |||||||||||||||||||||| Sbjct: 453 gtttcttttcttcttggttttt 432
>emb|AL135744.4|CNS01DVC Human chromosome 14 DNA sequence BAC R-524O1 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 195766 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 323 gtttcttttcttcttggttttt 344 |||||||||||||||||||||| Sbjct: 122232 gtttcttttcttcttggttttt 122211
>emb|AJ417058.1|HSA417058 Homo sapiens partial RPGRIP1 gene for RPGR-interacting protein 1, exons 12-13 Length = 1260 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 323 gtttcttttcttcttggttttt 344 |||||||||||||||||||||| Sbjct: 251 gtttcttttcttcttggttttt 230
>gb|AC126020.4| Mus musculus BAC clone RP24-364O7 from 8, complete sequence Length = 179287 Score = 44.1 bits (22), Expect = 0.32 Identities = 28/30 (93%) Strand = Plus / Plus Query: 188 cagagagaaagaggagagaggggtagagga 217 |||||||||||||||||||| || |||||| Sbjct: 111522 cagagagaaagaggagagagaggaagagga 111551
>dbj|AP004939.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT17M09, TM0105, complete sequence Length = 127990 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 189 agagagaaagaggagagagggg 210 |||||||||||||||||||||| Sbjct: 72491 agagagaaagaggagagagggg 72470
>gb|AC171273.1| Mus musculus BAC clone RP23-137J12 from chromosome 3, complete sequence Length = 234363 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 194 gaaagaggagagaggggtagag 215 |||||||||||||||||||||| Sbjct: 129783 gaaagaggagagaggggtagag 129804
>emb|AJ417067.1|HSA417067 Homo sapiens mRNA for RPGR-interacting protein 1 (RPGRIP1 gene) Length = 3861 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 323 gtttcttttcttcttggttttt 344 |||||||||||||||||||||| Sbjct: 1501 gtttcttttcttcttggttttt 1480
>gb|AC160860.2| Homo sapiens chromosome 11 clone WI2-3817J24, complete sequence Length = 40103 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 189 agagagaaagaggagagaggg 209 ||||||||||||||||||||| Sbjct: 15253 agagagaaagaggagagaggg 15233
>gb|AC004782.1| Homo sapiens chromosome 5, BAC clone 205e20 (LBNL H170), complete sequence Length = 184706 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 324 tttcttttcttcttggttttt 344 ||||||||||||||||||||| Sbjct: 100504 tttcttttcttcttggttttt 100484
>gb|AC164635.5| Mus musculus BAC clone RP23-65G17 from chromosome 16, complete sequence Length = 162255 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 184 ccaccagagagaaagaggaga 204 ||||||||||||||||||||| Sbjct: 29328 ccaccagagagaaagaggaga 29348
>gb|AC124365.5| Mus musculus BAC clone RP24-539F12 from chromosome 12, complete sequence Length = 148952 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 189 agagagaaagaggagagaggg 209 ||||||||||||||||||||| Sbjct: 50255 agagagaaagaggagagaggg 50235
>gb|AY456694.1| Solanum tuberosum putative ethylene receptor (ERS) gene, complete cds Length = 8203 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 325 ttcttttcttcttggtttttt 345 ||||||||||||||||||||| Sbjct: 1443 ttcttttcttcttggtttttt 1463
>gb|AC091001.3| Papio anubis clone RP41-36M16, complete sequence Length = 177066 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 189 agagagaaagaggagagaggg 209 ||||||||||||||||||||| Sbjct: 175076 agagagaaagaggagagaggg 175056
>gb|AC122451.3| Mus musculus BAC clone RP24-252G15 from 16, complete sequence Length = 160256 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 184 ccaccagagagaaagaggaga 204 ||||||||||||||||||||| Sbjct: 89873 ccaccagagagaaagaggaga 89893
>gb|AC109138.10| Mus musculus chromosome 19, clone RP23-41B18, complete sequence Length = 269155 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 188 cagagagaaagaggagagagg 208 ||||||||||||||||||||| Sbjct: 63536 cagagagaaagaggagagagg 63556
>emb|AL162724.16| Human DNA sequence from clone RP11-121A14 on chromosome 9 Contains the 5' end of the NEK6 gene for NIMA (never in mitosis gene a)-related kinase 6, two novel genes and a CpG island, complete sequence Length = 122542 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 324 tttcttttcttcttggttttt 344 ||||||||||||||||||||| Sbjct: 35222 tttcttttcttcttggttttt 35242
>gb|AY152830.1| Felis catus clone BAC 463h11 major histocompatiblity complex classical class II region, partial sequence Length = 141214 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 189 agagagaaagaggagagaggg 209 ||||||||||||||||||||| Sbjct: 63205 agagagaaagaggagagaggg 63225
>emb|AL353032.1|ATT20N10 Arabidopsis thaliana DNA chromosome 3, BAC clone T20N10 Length = 90273 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 323 gtttcttttcttcttggtttt 343 ||||||||||||||||||||| Sbjct: 86990 gtttcttttcttcttggtttt 86970
>emb|AL163527.1|ATF17J16 Arabidopsis thaliana DNA chromosome 3, BAC clone F17J16 Length = 89517 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 323 gtttcttttcttcttggtttt 343 ||||||||||||||||||||| Sbjct: 366 gtttcttttcttcttggtttt 346
>emb|AL833523.1|HSM804836 Homo sapiens genomic DNA; cDNA DKFZp686H0737 (from clone DKFZp686H0737) Length = 3662 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 324 tttcttttcttcttggttttt 344 ||||||||||||||||||||| Sbjct: 244 tttcttttcttcttggttttt 264
>gb|AC013543.16| Homo sapiens chromosome 8, clone RP11-317H6, complete sequence Length = 177777 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 221 actgcagcactcttcatgata 241 ||||||||||||||||||||| Sbjct: 171944 actgcagcactcttcatgata 171964
>gb|AC023866.8| Homo sapiens chromosome 8, clone RP11-787D18, complete sequence Length = 180486 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 221 actgcagcactcttcatgata 241 ||||||||||||||||||||| Sbjct: 97638 actgcagcactcttcatgata 97618
>gb|AC012634.8| Homo sapiens chromosome 5 clone CTD-2185H17, complete sequence Length = 237712 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 324 tttcttttcttcttggttttt 344 ||||||||||||||||||||| Sbjct: 182397 tttcttttcttcttggttttt 182377
>dbj|AK083771.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length enriched library, clone:D130006K20 product:unclassifiable, full insert sequence Length = 3152 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 184 ccaccagagagaaagaggaga 204 ||||||||||||||||||||| Sbjct: 3128 ccaccagagagaaagaggaga 3108
>dbj|AK031119.1| Mus musculus 13 days embryo forelimb cDNA, RIKEN full-length enriched library, clone:5930406J02 product:hypothetical protein, full insert sequence Length = 3938 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 198 gaggagagaggggtagaggat 218 ||||||||||||||||||||| Sbjct: 3151 gaggagagaggggtagaggat 3131
>dbj|AP007216.1| Homo sapiens genomic DNA, chromosome 11 clone:RP11-643C9, complete sequence Length = 100462 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 189 agagagaaagaggagagaggg 209 ||||||||||||||||||||| Sbjct: 47116 agagagaaagaggagagaggg 47096
>gb|AC122362.5| Mus musculus BAC clone RP23-430N1 from chromosome 6, complete sequence Length = 212275 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 189 agagagaaagaggagagaggg 209 ||||||||||||||||||||| Sbjct: 27217 agagagaaagaggagagaggg 27197
>gb|AC140491.4| Mus musculus BAC clone RP24-136G21 from 9, complete sequence Length = 163404 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 195 aaagaggagagaggggtagag 215 ||||||||||||||||||||| Sbjct: 73645 aaagaggagagaggggtagag 73625
>emb|CT009697.13| Mouse DNA sequence from clone RP23-131H5 on chromosome 13, complete sequence Length = 225802 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 324 tttcttttcttcttggttttt 344 ||||||||||||||||||||| Sbjct: 76442 tttcttttcttcttggttttt 76462
>gb|AC122201.4| Mus musculus BAC clone RP23-64I9 from 6, complete sequence Length = 239994 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 189 agagagaaagaggagagaggg 209 ||||||||||||||||||||| Sbjct: 68923 agagagaaagaggagagaggg 68943
>emb|AL731828.22| Mouse DNA sequence from clone RP23-50L5 on chromosome X, complete sequence Length = 228327 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 190 gagagaaagaggagagagggg 210 ||||||||||||||||||||| Sbjct: 111752 gagagaaagaggagagagggg 111732
>emb|AL844594.4| Mouse DNA sequence from clone RP23-260P5 on chromosome X, complete sequence Length = 82772 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 198 gaggagagaggggtagaggat 218 ||||||||||||||||||||| Sbjct: 59452 gaggagagaggggtagaggat 59432
>gb|AC120173.9| Mus musculus chromosome 1, clone RP24-485J8, complete sequence Length = 189779 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 cagagagaaagaggagagag 207 |||||||||||||||||||| Sbjct: 163313 cagagagaaagaggagagag 163332
>gb|AC165958.2| Mus musculus BAC clone RP23-417I20 from chromosome 16, complete sequence Length = 186202 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 323 gtttcttttcttcttggttttttc 346 |||||||||||| ||||||||||| Sbjct: 179067 gtttcttttctttttggttttttc 179090
>gb|AC169508.1| Mus musculus BAC clone RP23-167I21 from chromosome 16, complete sequence Length = 211870 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 323 gtttcttttcttcttggttttttc 346 |||||||||||| ||||||||||| Sbjct: 131589 gtttcttttctttttggttttttc 131612
>gb|AC163207.6| Mus musculus chromosome 1, clone RP24-137J11, complete sequence Length = 169102 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 gtttcttttcttcttggttt 342 |||||||||||||||||||| Sbjct: 151474 gtttcttttcttcttggttt 151493
>gb|CP000066.1| Trypanosoma brucei chromosome 3, complete sequence Length = 1653225 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 gtttcttttcttcttggttt 342 |||||||||||||||||||| Sbjct: 486870 gtttcttttcttcttggttt 486851
>gb|AC105379.11| Trypanosoma brucei chromosome 3 clone RPCI93-30P12, complete sequence Length = 165197 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 gtttcttttcttcttggttt 342 |||||||||||||||||||| Sbjct: 80916 gtttcttttcttcttggttt 80897
>gb|AC115060.9| Mus musculus chromosome 1, clone RP24-395F2, complete sequence Length = 172482 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 gtttcttttcttcttggttt 342 |||||||||||||||||||| Sbjct: 23411 gtttcttttcttcttggttt 23430
>gb|AC159614.7| Mus musculus chromosome 1, clone RP24-305O23, complete sequence Length = 156924 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 cagagagaaagaggagagag 207 |||||||||||||||||||| Sbjct: 141617 cagagagaaagaggagagag 141636
>gb|AC182666.2| Populus trichocarpa clone Pop1-18F23, complete sequence Length = 105222 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 tttcttttcttcttggtttt 343 |||||||||||||||||||| Sbjct: 47845 tttcttttcttcttggtttt 47826
>gb|AC146084.2| Pan troglodytes BAC clone RP43-56L21 from 7, complete sequence Length = 152170 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 cagagagaaagaggagagag 207 |||||||||||||||||||| Sbjct: 146723 cagagagaaagaggagagag 146704
>gb|AC134562.5| Mus musculus BAC clone RP24-120M11 from chromosome Y, complete sequence Length = 169626 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 cagagagaaagaggagagag 207 |||||||||||||||||||| Sbjct: 104099 cagagagaaagaggagagag 104118
>gb|AC125127.4| Mus musculus BAC clone RP24-286E4 from chromosome Y, complete sequence Length = 168835 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 cagagagaaagaggagagag 207 |||||||||||||||||||| Sbjct: 12651 cagagagaaagaggagagag 12670
>emb|CR376773.7| Zebrafish DNA sequence from clone CH211-23E22 in linkage group 17, complete sequence Length = 167088 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 187 ccagagagaaagaggagagagggg 210 ||||||||||||| |||||||||| Sbjct: 64761 ccagagagaaagaagagagagggg 64784
>emb|BX571728.14| Zebrafish DNA sequence from clone DKEY-210O7 in linkage group 6, complete sequence Length = 229059 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 cagagagaaagaggagagag 207 |||||||||||||||||||| Sbjct: 182155 cagagagaaagaggagagag 182136
>gb|AC140458.3| Mus musculus BAC clone RP23-19C24 from chromosome 19, complete sequence Length = 186016 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 gcaaaacactcacactgcac 101 |||||||||||||||||||| Sbjct: 27346 gcaaaacactcacactgcac 27365
>gb|AC121940.3| Mus musculus BAC clone RP24-209B21 from chromosome 19, complete sequence Length = 203390 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 gcaaaacactcacactgcac 101 |||||||||||||||||||| Sbjct: 61475 gcaaaacactcacactgcac 61456
>gb|AC124470.4| Mus musculus BAC clone RP24-174O2 from chromosome 6, complete sequence Length = 187005 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 agagagaaagaggagagagg 208 |||||||||||||||||||| Sbjct: 76608 agagagaaagaggagagagg 76627
>gb|AC129314.4| Mus musculus BAC clone RP23-365D12 from chromosome 1, complete sequence Length = 200605 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 agagagaaagaggagagagg 208 |||||||||||||||||||| Sbjct: 67213 agagagaaagaggagagagg 67194
>gb|AC122187.3| Mus musculus BAC clone RP23-21P2 from 1, complete sequence Length = 252095 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 agagagaaagaggagagagg 208 |||||||||||||||||||| Sbjct: 249125 agagagaaagaggagagagg 249106
>gb|AC103645.6| Mus musculus chromosome 19, clone RP24-510J20, complete sequence Length = 209224 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 agagagaaagaggagagagg 208 |||||||||||||||||||| Sbjct: 167209 agagagaaagaggagagagg 167228
>gb|AC107765.9| Mus musculus chromosome 17, clone RP23-166P7, complete sequence Length = 229687 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 189 agagagaaagaggagagaggggtagagg 216 ||||||| |||||||||||||| ||||| Sbjct: 78917 agagagagagaggagagagggggagagg 78944
>emb|AL138894.11| Human DNA sequence from clone RP11-28O4 on chromosome 9 Contains the 5' end of the DBCCR1 gene for deleted in bladder cancer chromosome region candidate 1 (IB3089A) and a CpG island, complete sequence Length = 152366 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 cagagagaaagaggagagag 207 |||||||||||||||||||| Sbjct: 142034 cagagagaaagaggagagag 142053 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 agagagaaagaggagagagg 208 |||||||||||||||||||| Sbjct: 95526 agagagaaagaggagagagg 95545
>gb|AC112917.3| Homo sapiens X BAC RP11-46C18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 134089 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 agagagaaagaggagagagg 208 |||||||||||||||||||| Sbjct: 47668 agagagaaagaggagagagg 47649
>emb|AL663107.13| Mouse DNA sequence from clone RP23-465K20 on chromosome 11 Contains a novel gene (2210415F13Rik), an NADH dehydrogenase (ubiquinone) Fe-S protein 3 (Ndufs3) pseudogene, a novel pseudogene, a novel gene (1810065E05Rik), a novel gene similar to rat solute carrier family 11 member 1 (Slc11a1), a novel gene, the Olfr30 gene for olfactory receptor 30, an olfactory receptor (MOR284-1P) pseudogene, the gene for olfactory receptor MOR284-2 (LOC216774), a novel gene similar to MOR275 (LOC193140), a ribosomal protein L24 (Rpl24) pseudogene, the gene for olfactory receptor MOR275-1, a DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 (Ddx5) pseudogene, an olfactory receptor (MOR275-3) pseudogene and a CpG island, complete sequence Length = 191700 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 gagagaaagaggagagaggg 209 |||||||||||||||||||| Sbjct: 32636 gagagaaagaggagagaggg 32617
>gb|AC139103.3| Homo sapiens chromosome 8, clone, complete sequence Length = 166920 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 cagagagaaagaggagagag 207 |||||||||||||||||||| Sbjct: 12132 cagagagaaagaggagagag 12151
>emb|BX323578.20| Zebrafish DNA sequence from clone DKEYP-81D2 in linkage group 14, complete sequence Length = 214676 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 gagagaaagaggagagaggg 209 |||||||||||||||||||| Sbjct: 78723 gagagaaagaggagagaggg 78742
>gb|AC156980.9| Mus musculus chromosome 1, clone RP23-191A12, complete sequence Length = 224673 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 cagagagaaagaggagagag 207 |||||||||||||||||||| Sbjct: 199079 cagagagaaagaggagagag 199060
>gb|AC008759.9| Homo sapiens chromosome 19 clone CTD-3116E22, complete sequence Length = 206395 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 agagagaaagaggagagagg 208 |||||||||||||||||||| Sbjct: 61007 agagagaaagaggagagagg 61026
>dbj|AK122974.1| Homo sapiens cDNA FLJ16721 fis, clone UTERU3001632, weakly similar to Homo sapiens zinc finger protein 135 (clone pHZ-17) (ZNF135) Length = 4409 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 agagagaaagaggagagagg 208 |||||||||||||||||||| Sbjct: 3475 agagagaaagaggagagagg 3456
>gb|AC114497.1| Homo sapiens chromosome 1 clone RP11-568G23, complete sequence Length = 127715 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 cattagcaaaacactcacac 96 |||||||||||||||||||| Sbjct: 22212 cattagcaaaacactcacac 22193
>gb|AC013284.9| Homo sapiens chromosome 10 clone RP11-13E1, complete sequence Length = 154259 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 cagagagaaagaggagagag 207 |||||||||||||||||||| Sbjct: 4488 cagagagaaagaggagagag 4507
>gb|AC099791.2| Homo sapiens chromosome 1 clone RP11-430G17, complete sequence Length = 239704 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 agagagaaagaggagagagg 208 |||||||||||||||||||| Sbjct: 86481 agagagaaagaggagagagg 86462
>gb|AC026739.7| Homo sapiens chromosome 5 clone CTD-2580L4, complete sequence Length = 186308 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 cagagagaaagaggagagag 207 |||||||||||||||||||| Sbjct: 154620 cagagagaaagaggagagag 154601
>gb|AC110892.11| Mus musculus chromosome 3, clone RP24-490D9, complete sequence Length = 150740 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 189 agagagaaagaggagagaggggta 212 ||||||| |||||||||||||||| Sbjct: 84923 agagagagagaggagagaggggta 84946
>dbj|AK048340.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130050F23 product:unclassifiable, full insert sequence Length = 3984 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 agagagaaagaggagagagg 208 |||||||||||||||||||| Sbjct: 22 agagagaaagaggagagagg 3
>gb|AC152954.1| Mus musculus 6 BAC RP23-296N5 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 203474 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 352 aggaagctgtgttgctgctg 371 |||||||||||||||||||| Sbjct: 114404 aggaagctgtgttgctgctg 114385
>emb|BX248509.4| Zebrafish DNA sequence from clone CH211-113O22, complete sequence Length = 61707 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 183 cccaccagagagaaagaggagaga 206 ||||||||||||||| |||||||| Sbjct: 12504 cccaccagagagaaaaaggagaga 12527
>gb|AC098617.5| Homo sapiens BAC clone RP11-56I1 from 2, complete sequence Length = 142812 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 324 tttcttttcttcttggttttttca 347 |||||||||||||| ||||||||| Sbjct: 99731 tttcttttcttcttcgttttttca 99754
>emb|AL833805.11| Mouse DNA sequence from clone RP23-158L19 on chromosome X, complete sequence Length = 118691 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 cagagagaaagaggagagag 207 |||||||||||||||||||| Sbjct: 31497 cagagagaaagaggagagag 31478
>emb|BX004996.8| Zebrafish DNA sequence from clone CH211-268F23 in linkage group 6, complete sequence Length = 167320 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 187 ccagagagaaagaggagagagggg 210 ||||||||||||| |||||||||| Sbjct: 43708 ccagagagaaagaagagagagggg 43731
>emb|BX000475.6| Zebrafish DNA sequence from clone CH211-112P5, complete sequence Length = 156271 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 gagagaaagaggagagaggg 209 |||||||||||||||||||| Sbjct: 33751 gagagaaagaggagagaggg 33770
>dbj|AB117934.1| Camellia sinensis CsGS1;3 mRNA for glutamine synthetase, complete cds Length = 1409 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 gagagaaagaggagagaggg 209 |||||||||||||||||||| Sbjct: 50 gagagaaagaggagagaggg 69
>dbj|AP005647.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0026E05 Length = 159860 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 tatactgcagcactcttcat 237 |||||||||||||||||||| Sbjct: 134093 tatactgcagcactcttcat 134074
>gb|AC154591.2| Mus musculus BAC clone RP23-370M19 from 16, complete sequence Length = 196385 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 agagagaaagaggagagagg 208 |||||||||||||||||||| Sbjct: 141829 agagagaaagaggagagagg 141848
>gb|AC116817.9| Mus musculus chromosome 1, clone RP24-357I7, complete sequence Length = 186439 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 cagagagaaagaggagagag 207 |||||||||||||||||||| Sbjct: 23673 cagagagaaagaggagagag 23692
>gb|AC113951.13| Mus musculus chromosome 8, clone RP24-161A21, complete sequence Length = 166298 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 cagagagaaagaggagagag 207 |||||||||||||||||||| Sbjct: 109265 cagagagaaagaggagagag 109246
>gb|AC007461.8|AC007461 Homo sapiens chromosome 17, clone 84_E_24, complete sequence Length = 180385 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 agagagaaagaggagagagg 208 |||||||||||||||||||| Sbjct: 172408 agagagaaagaggagagagg 172389
>dbj|AP005976.2| Homo sapiens genomic DNA, chromosome 8qtel, clone: KB1585H8, complete sequence Length = 226221 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 cagagagaaagaggagagag 207 |||||||||||||||||||| Sbjct: 218480 cagagagaaagaggagagag 218461
>emb|CT476831.7| Mouse DNA sequence from clone RP23-414J18 on chromosome 16, complete sequence Length = 193062 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 323 gtttcttttcttcttggttttttc 346 |||||||||||| ||||||||||| Sbjct: 489 gtttcttttctttttggttttttc 512
>emb|AL954371.6| Zebrafish DNA sequence from clone CH211-207O15, complete sequence Length = 124954 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 183 cccaccagagagaaagaggagaga 206 ||||||||||||||| |||||||| Sbjct: 101251 cccaccagagagaaaaaggagaga 101274
>gb|AC133169.3| Mus musculus BAC clone RP24-259I15 from 9, complete sequence Length = 163930 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 cagagagaaagaggagagag 207 |||||||||||||||||||| Sbjct: 125412 cagagagaaagaggagagag 125431
>emb|AL773540.18| Mouse DNA sequence from clone RP23-177L19 on chromosome 2, complete sequence Length = 217148 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 agagagaaagaggagagagg 208 |||||||||||||||||||| Sbjct: 101911 agagagaaagaggagagagg 101892
>emb|CT025583.7| Mouse DNA sequence from clone RP24-68O11 on chromosome 14, complete sequence Length = 201727 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 agagagaaagaggagagagg 208 |||||||||||||||||||| Sbjct: 119333 agagagaaagaggagagagg 119352
>emb|AL591544.30| Mouse DNA sequence from clone RP23-386D6 on chromosome 11, complete sequence Length = 201673 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 agagagaaagaggagagagg 208 |||||||||||||||||||| Sbjct: 115917 agagagaaagaggagagagg 115898
>emb|AJ131017.1|MMU131017 Mus musculus SCL gene locus Length = 86380 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 gagagaaagaggagagaggg 209 |||||||||||||||||||| Sbjct: 43793 gagagaaagaggagagaggg 43774
>emb|AL596446.11| Mouse DNA sequence from clone RP23-386E10 on chromosome 11, complete sequence Length = 191735 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 gagagaaagaggagagaggg 209 |||||||||||||||||||| Sbjct: 126998 gagagaaagaggagagaggg 126979
>emb|AL772312.6| Mouse DNA sequence from clone RP23-91D16 on chromosome 4, complete sequence Length = 183630 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 tttcttttcttcttggtttt 343 |||||||||||||||||||| Sbjct: 76668 tttcttttcttcttggtttt 76687
>emb|AL670035.15| Mouse DNA sequence from clone RP23-295C20 on chromosome 4, complete sequence Length = 201142 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 gagagaaagaggagagaggg 209 |||||||||||||||||||| Sbjct: 149142 gagagaaagaggagagaggg 149123
>emb|AJ297131.1|MMAJ2971 Mus musculus SIL, MAP_17, CYP_a, SCL & CYP_b genes Length = 234411 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 gagagaaagaggagagaggg 209 |||||||||||||||||||| Sbjct: 43793 gagagaaagaggagagaggg 43774 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,303,698 Number of Sequences: 3902068 Number of extensions: 4303698 Number of successful extensions: 117295 Number of sequences better than 10.0: 106 Number of HSP's better than 10.0 without gapping: 106 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 116906 Number of HSP's gapped (non-prelim): 389 length of query: 377 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 355 effective length of database: 17,147,199,772 effective search space: 6087255919060 effective search space used: 6087255919060 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
