ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags6e23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1RS4_MAIZE (O22424) 40S ribosomal protein S4 127 1e-29
2RS4_SOLTU (P46300) 40S ribosomal protein S4 124 1e-28
3RS4_ARATH (P49204) 40S ribosomal protein S4 123 2e-28
4RS4_PRUAR (O81363) 40S ribosomal protein S4 122 4e-28
5RS4_GOSHI (P46299) 40S ribosomal protein S4 121 8e-28
6RS4_ORYSA (P49398) 40S ribosomal protein S4 (SCAR protein SS620) 92 6e-23
7RS4Y1_MONDO (O62739) 40S ribosomal protein S4, Y isoform 1 99 4e-21
8RS4X_MONDO (O62738) 40S ribosomal protein S4, X isoform 99 4e-21
9RS4_XENTR (Q6PBC4) 40S ribosomal protein S4 98 1e-20
10RS4_XENLA (P49401) 40S ribosomal protein S4 98 1e-20
11RS4_CRIGR (P47961) 40S ribosomal protein S4 98 1e-20
12RS4_CHICK (P47836) 40S ribosomal protein S4 98 1e-20
13RS4X_RAT (P62703) 40S ribosomal protein S4, X isoform 98 1e-20
14RS4X_MOUSE (P62702) 40S ribosomal protein S4, X isoform 98 1e-20
15RS4X_MESAU (P62704) 40S ribosomal protein S4, X isoform 98 1e-20
16RS4X_MACFU (Q76MY1) 40S ribosomal protein S4, X isoform 98 1e-20
17RS4X_HUMAN (P62701) 40S ribosomal protein S4, X isoform (Single ... 98 1e-20
18RS4X_FELCA (P62705) 40S ribosomal protein S4, X isoform 98 1e-20
19RS4X_CERAE (Q76N24) 40S ribosomal protein S4, X isoform 98 1e-20
20RS4Y1_HUMAN (P22090) 40S ribosomal protein S4, Y isoform 1 96 3e-20
21RS4Y1_PONPY (Q861U7) 40S ribosomal protein S4, Y isoform 1 96 4e-20
22RS4Y1_GORGO (Q861U8) 40S ribosomal protein S4, Y isoform 1 96 5e-20
23RS4Y1_MACFU (P79183) 40S ribosomal protein S4, Y isoform 1 95 6e-20
24RS4X_BRARE (Q642H9) 40S ribosomal protein S4, X isoform 95 6e-20
25RS4Y1_PANTR (Q861U9) 40S ribosomal protein S4, Y isoform 1 94 1e-19
26RS4Y1_PANPA (Q861V0) 40S ribosomal protein S4, Y isoform 1 94 1e-19
27RS4_DROME (P41042) 40S ribosomal protein S4 94 1e-19
28RS4_ICTPU (Q90YS0) 40S ribosomal protein S4 93 3e-19
29RS4Y2_HUMAN (Q8TD47) 40S ribosomal protein S4, Y isoform 2 92 4e-19
30RS4Y2_PANTR (Q6GVM7) 40S ribosomal protein S4, Y isoform 2 92 7e-19
31RS4B_SCHPO (Q9USW5) 40S ribosomal protein S4-B 86 4e-17
32RS4C_SCHPO (Q9P4W9) 40S ribosomal protein S4-C 85 7e-17
33RS4A_SCHPO (P87158) 40S ribosomal protein S4-A 85 7e-17
34RS4_YARLI (O59950) 40S ribosomal protein S4 (S7) 79 5e-15
35RS4_YEAST (P05753) 40S ribosomal protein S4 (S7) (YS6) (RP5) 77 1e-14
36RS4_CANAL (P47837) 40S ribosomal protein S4 (S7) 76 3e-14
37RS4_DICDI (P51405) 40S ribosomal protein S4 73 3e-13
38RS4_CAEEL (Q9N3X2) 40S ribosomal protein S4 70 2e-12
39RS4_HORSE (P55832) 40S ribosomal protein S4 (Fragment) 35 0.10
40RS4_BOVIN (P79103) 40S ribosomal protein S4 (Fragment) 35 0.10
41LRP2_RAT (P98158) Low-density lipoprotein receptor-related prote... 33 0.30
42YCGV_ECO57 (Q8X583) Hypothetical protein ycgV 30 3.3
43Y977_HAEDU (Q7VMJ8) UPF0078 membrane protein HD_0977 30 3.3
44FOSB_BACLD (Q65KJ5) Metallothiol transferase fosB (EC 2.5.1.-) (... 30 3.3
45BAT3_RAT (Q6MG49) Large proline-rich protein BAT3 (HLA-B-associa... 28 9.7
46INAA_ECOLI (P27294) Protein inaA 28 9.7 
>RS4_MAIZE (O22424) 40S ribosomal protein S4|
          Length = 265

 Score =  127 bits (319), Expect = 1e-29
 Identities = 64/90 (71%), Positives = 68/90 (75%)
 Frame = -1

Query: 436 NKIVXFIKFDXXXXXXXXXXXXXXXXXVIKNREKHKGTFXTIHVEXAQGHQFATRLGNVF 257
           NKIV FIKFD                 VIKNREKHKG+F TIHVE + GHQFATR+GNVF
Sbjct: 167 NKIVDFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDSLGHQFATRMGNVF 226

Query: 256 TIGKGTKPWVSLPKGKGIKLTIIEEQRKRD 167
           TIGKG KPWVSLPKGKGIKL+IIEEQRKRD
Sbjct: 227 TIGKGNKPWVSLPKGKGIKLSIIEEQRKRD 256
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>RS4_SOLTU (P46300) 40S ribosomal protein S4|
          Length = 264

 Score =  124 bits (310), Expect = 1e-28
 Identities = 60/89 (67%), Positives = 68/89 (76%)
 Frame = -1

Query: 436 NKIVXFIKFDXXXXXXXXXXXXXXXXXVIKNREKHKGTFXTIHVEXAQGHQFATRLGNVF 257
           NKIV FIKFD                 VIKNREKHKG+F T+H++ +QGH+FATRLGNVF
Sbjct: 167 NKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETLHIQDSQGHEFATRLGNVF 226

Query: 256 TIGKGTKPWVSLPKGKGIKLTIIEEQRKR 170
           T+GKGTKPWVSLPKGKGIKLTIIE+ RKR
Sbjct: 227 TLGKGTKPWVSLPKGKGIKLTIIEDARKR 255
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>RS4_ARATH (P49204) 40S ribosomal protein S4|
          Length = 262

 Score =  123 bits (308), Expect = 2e-28
 Identities = 61/89 (68%), Positives = 67/89 (75%)
 Frame = -1

Query: 436 NKIVXFIKFDXXXXXXXXXXXXXXXXXVIKNREKHKGTFXTIHVEXAQGHQFATRLGNVF 257
           NKIV FIKFD                 VIKNREKHKG+F TIH++ + GH+FATRLGNV+
Sbjct: 167 NKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVY 226

Query: 256 TIGKGTKPWVSLPKGKGIKLTIIEEQRKR 170
           TIGKGTKPWVSLPKGKGIKLTIIEE RKR
Sbjct: 227 TIGKGTKPWVSLPKGKGIKLTIIEEARKR 255
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>RS4_PRUAR (O81363) 40S ribosomal protein S4|
          Length = 261

 Score =  122 bits (306), Expect = 4e-28
 Identities = 61/89 (68%), Positives = 66/89 (74%)
 Frame = -1

Query: 436 NKIVXFIKFDXXXXXXXXXXXXXXXXXVIKNREKHKGTFXTIHVEXAQGHQFATRLGNVF 257
           NKI  FIKFD                 VIKNREKHKG+F TIHV+ A GH+FATRLGNVF
Sbjct: 163 NKITDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLGNVF 222

Query: 256 TIGKGTKPWVSLPKGKGIKLTIIEEQRKR 170
           TIGKGTKPWVSLPKGKGIKLTI+EE +KR
Sbjct: 223 TIGKGTKPWVSLPKGKGIKLTILEEAKKR 251
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>RS4_GOSHI (P46299) 40S ribosomal protein S4|
          Length = 262

 Score =  121 bits (303), Expect = 8e-28
 Identities = 62/89 (69%), Positives = 66/89 (74%)
 Frame = -1

Query: 436 NKIVXFIKFDXXXXXXXXXXXXXXXXXVIKNREKHKGTFXTIHVEXAQGHQFATRLGNVF 257
           NKIV FIKFD                 VIKNREKHKG+F TIHV+ A GH+FATRLGNVF
Sbjct: 167 NKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDAAGHEFATRLGNVF 226

Query: 256 TIGKGTKPWVSLPKGKGIKLTIIEEQRKR 170
           TIGKGTKPWVSLPK KGIKL+IIEE RKR
Sbjct: 227 TIGKGTKPWVSLPKRKGIKLSIIEEARKR 255
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>RS4_ORYSA (P49398) 40S ribosomal protein S4 (SCAR protein SS620)|
          Length = 268

 Score = 91.7 bits (226), Expect(2) = 6e-23
 Identities = 43/49 (87%), Positives = 45/49 (91%)
 Frame = -1

Query: 331 KGTFXTIHVEXAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIE 185
           KG+F TIHVE A GHQFATRLGNVFTIGKG KPWVSLPKGKGIKL+IIE
Sbjct: 205 KGSFETIHVEDALGHQFATRLGNVFTIGKGNKPWVSLPKGKGIKLSIIE 253



 Score = 34.3 bits (77), Expect(2) = 6e-23
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = -3

Query: 392 HGDWWAQHWACWCDQEQGEA*GN 324
           HGDW  ++ A WCDQ+QGEA G+
Sbjct: 186 HGDW-RRNTAVWCDQQQGEAKGS 207
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>RS4Y1_MONDO (O62739) 40S ribosomal protein S4, Y isoform 1|
          Length = 262

 Score = 99.0 bits (245), Expect = 4e-21
 Identities = 48/88 (54%), Positives = 57/88 (64%)
 Frame = -1

Query: 433 KIVXFIKFDXXXXXXXXXXXXXXXXXVIKNREKHKGTFXTIHVEXAQGHQFATRLGNVFT 254
           KI  FIKFD                 VI NREKH G+F  +HV+ A G+ FATRL N+F 
Sbjct: 167 KITDFIKFDTGNLCMVTGGANLGRIGVITNREKHPGSFDVVHVKDANGNSFATRLSNIFV 226

Query: 253 IGKGTKPWVSLPKGKGIKLTIIEEQRKR 170
           IGKG KPW+SLP+GKGI+LTI EE+ KR
Sbjct: 227 IGKGNKPWISLPRGKGIRLTIAEERDKR 254
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>RS4X_MONDO (O62738) 40S ribosomal protein S4, X isoform|
          Length = 262

 Score = 99.0 bits (245), Expect = 4e-21
 Identities = 48/88 (54%), Positives = 57/88 (64%)
 Frame = -1

Query: 433 KIVXFIKFDXXXXXXXXXXXXXXXXXVIKNREKHKGTFXTIHVEXAQGHQFATRLGNVFT 254
           KI  FIKFD                 VI NREKH G+F  +HV+ A G+ FATRL N+F 
Sbjct: 167 KITDFIKFDTGNMCMVTGGANLGRIGVITNREKHPGSFDVVHVKDANGNSFATRLSNIFV 226

Query: 253 IGKGTKPWVSLPKGKGIKLTIIEEQRKR 170
           IGKG KPW+SLP+GKGI+LTI EE+ KR
Sbjct: 227 IGKGNKPWISLPRGKGIRLTIAEERDKR 254
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>RS4_XENTR (Q6PBC4) 40S ribosomal protein S4|
          Length = 262

 Score = 97.8 bits (242), Expect = 1e-20
 Identities = 47/88 (53%), Positives = 57/88 (64%)
 Frame = -1

Query: 433 KIVXFIKFDXXXXXXXXXXXXXXXXXVIKNREKHKGTFXTIHVEXAQGHQFATRLGNVFT 254
           KI  FIKFD                 VI NRE+H G+F  +HV+ A G+ FATRL N+F 
Sbjct: 167 KITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFV 226

Query: 253 IGKGTKPWVSLPKGKGIKLTIIEEQRKR 170
           IGKG KPW+SLP+GKGI+LTI EE+ KR
Sbjct: 227 IGKGNKPWISLPRGKGIRLTIAEERDKR 254
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>RS4_XENLA (P49401) 40S ribosomal protein S4|
          Length = 262

 Score = 97.8 bits (242), Expect = 1e-20
 Identities = 47/88 (53%), Positives = 57/88 (64%)
 Frame = -1

Query: 433 KIVXFIKFDXXXXXXXXXXXXXXXXXVIKNREKHKGTFXTIHVEXAQGHQFATRLGNVFT 254
           KI  FIKFD                 VI NRE+H G+F  +HV+ A G+ FATRL N+F 
Sbjct: 167 KITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNNFATRLSNIFV 226

Query: 253 IGKGTKPWVSLPKGKGIKLTIIEEQRKR 170
           IGKG KPW+SLP+GKGI+LTI EE+ KR
Sbjct: 227 IGKGNKPWISLPRGKGIRLTIAEERDKR 254
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>RS4_CRIGR (P47961) 40S ribosomal protein S4|
          Length = 262

 Score = 97.8 bits (242), Expect = 1e-20
 Identities = 47/88 (53%), Positives = 57/88 (64%)
 Frame = -1

Query: 433 KIVXFIKFDXXXXXXXXXXXXXXXXXVIKNREKHKGTFXTIHVEXAQGHQFATRLGNVFT 254
           KI  FIKFD                 VI NRE+H G+F  +HV+ A G+ FATRL N+F 
Sbjct: 167 KITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFV 226

Query: 253 IGKGTKPWVSLPKGKGIKLTIIEEQRKR 170
           IGKG KPW+SLP+GKGI+LTI EE+ KR
Sbjct: 227 IGKGNKPWISLPRGKGIRLTIAEERDKR 254
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>RS4_CHICK (P47836) 40S ribosomal protein S4|
          Length = 262

 Score = 97.8 bits (242), Expect = 1e-20
 Identities = 47/88 (53%), Positives = 57/88 (64%)
 Frame = -1

Query: 433 KIVXFIKFDXXXXXXXXXXXXXXXXXVIKNREKHKGTFXTIHVEXAQGHQFATRLGNVFT 254
           KI  FIKFD                 VI NRE+H G+F  +HV+ A G+ FATRL N+F 
Sbjct: 167 KITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFV 226

Query: 253 IGKGTKPWVSLPKGKGIKLTIIEEQRKR 170
           IGKG KPW+SLP+GKGI+LTI EE+ KR
Sbjct: 227 IGKGNKPWISLPRGKGIRLTIAEERDKR 254
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>RS4X_RAT (P62703) 40S ribosomal protein S4, X isoform|
          Length = 262

 Score = 97.8 bits (242), Expect = 1e-20
 Identities = 47/88 (53%), Positives = 57/88 (64%)
 Frame = -1

Query: 433 KIVXFIKFDXXXXXXXXXXXXXXXXXVIKNREKHKGTFXTIHVEXAQGHQFATRLGNVFT 254
           KI  FIKFD                 VI NRE+H G+F  +HV+ A G+ FATRL N+F 
Sbjct: 167 KITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFV 226

Query: 253 IGKGTKPWVSLPKGKGIKLTIIEEQRKR 170
           IGKG KPW+SLP+GKGI+LTI EE+ KR
Sbjct: 227 IGKGNKPWISLPRGKGIRLTIAEERDKR 254
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>RS4X_MOUSE (P62702) 40S ribosomal protein S4, X isoform|
          Length = 262

 Score = 97.8 bits (242), Expect = 1e-20
 Identities = 47/88 (53%), Positives = 57/88 (64%)
 Frame = -1

Query: 433 KIVXFIKFDXXXXXXXXXXXXXXXXXVIKNREKHKGTFXTIHVEXAQGHQFATRLGNVFT 254
           KI  FIKFD                 VI NRE+H G+F  +HV+ A G+ FATRL N+F 
Sbjct: 167 KITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFV 226

Query: 253 IGKGTKPWVSLPKGKGIKLTIIEEQRKR 170
           IGKG KPW+SLP+GKGI+LTI EE+ KR
Sbjct: 227 IGKGNKPWISLPRGKGIRLTIAEERDKR 254
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>RS4X_MESAU (P62704) 40S ribosomal protein S4, X isoform|
          Length = 262

 Score = 97.8 bits (242), Expect = 1e-20
 Identities = 47/88 (53%), Positives = 57/88 (64%)
 Frame = -1

Query: 433 KIVXFIKFDXXXXXXXXXXXXXXXXXVIKNREKHKGTFXTIHVEXAQGHQFATRLGNVFT 254
           KI  FIKFD                 VI NRE+H G+F  +HV+ A G+ FATRL N+F 
Sbjct: 167 KITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFV 226

Query: 253 IGKGTKPWVSLPKGKGIKLTIIEEQRKR 170
           IGKG KPW+SLP+GKGI+LTI EE+ KR
Sbjct: 227 IGKGNKPWISLPRGKGIRLTIAEERDKR 254
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>RS4X_MACFU (Q76MY1) 40S ribosomal protein S4, X isoform|
          Length = 262

 Score = 97.8 bits (242), Expect = 1e-20
 Identities = 47/88 (53%), Positives = 57/88 (64%)
 Frame = -1

Query: 433 KIVXFIKFDXXXXXXXXXXXXXXXXXVIKNREKHKGTFXTIHVEXAQGHQFATRLGNVFT 254
           KI  FIKFD                 VI NRE+H G+F  +HV+ A G+ FATRL N+F 
Sbjct: 167 KITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFV 226

Query: 253 IGKGTKPWVSLPKGKGIKLTIIEEQRKR 170
           IGKG KPW+SLP+GKGI+LTI EE+ KR
Sbjct: 227 IGKGNKPWISLPRGKGIRLTIAEERDKR 254
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>RS4X_HUMAN (P62701) 40S ribosomal protein S4, X isoform (Single copy abundant|
           mRNA protein) (SCR10)
          Length = 262

 Score = 97.8 bits (242), Expect = 1e-20
 Identities = 47/88 (53%), Positives = 57/88 (64%)
 Frame = -1

Query: 433 KIVXFIKFDXXXXXXXXXXXXXXXXXVIKNREKHKGTFXTIHVEXAQGHQFATRLGNVFT 254
           KI  FIKFD                 VI NRE+H G+F  +HV+ A G+ FATRL N+F 
Sbjct: 167 KITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFV 226

Query: 253 IGKGTKPWVSLPKGKGIKLTIIEEQRKR 170
           IGKG KPW+SLP+GKGI+LTI EE+ KR
Sbjct: 227 IGKGNKPWISLPRGKGIRLTIAEERDKR 254
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>RS4X_FELCA (P62705) 40S ribosomal protein S4, X isoform|
          Length = 262

 Score = 97.8 bits (242), Expect = 1e-20
 Identities = 47/88 (53%), Positives = 57/88 (64%)
 Frame = -1

Query: 433 KIVXFIKFDXXXXXXXXXXXXXXXXXVIKNREKHKGTFXTIHVEXAQGHQFATRLGNVFT 254
           KI  FIKFD                 VI NRE+H G+F  +HV+ A G+ FATRL N+F 
Sbjct: 167 KITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFV 226

Query: 253 IGKGTKPWVSLPKGKGIKLTIIEEQRKR 170
           IGKG KPW+SLP+GKGI+LTI EE+ KR
Sbjct: 227 IGKGNKPWISLPRGKGIRLTIAEERDKR 254
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>RS4X_CERAE (Q76N24) 40S ribosomal protein S4, X isoform|
          Length = 262

 Score = 97.8 bits (242), Expect = 1e-20
 Identities = 47/88 (53%), Positives = 57/88 (64%)
 Frame = -1

Query: 433 KIVXFIKFDXXXXXXXXXXXXXXXXXVIKNREKHKGTFXTIHVEXAQGHQFATRLGNVFT 254
           KI  FIKFD                 VI NRE+H G+F  +HV+ A G+ FATRL N+F 
Sbjct: 167 KITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFV 226

Query: 253 IGKGTKPWVSLPKGKGIKLTIIEEQRKR 170
           IGKG KPW+SLP+GKGI+LTI EE+ KR
Sbjct: 227 IGKGNKPWISLPRGKGIRLTIAEERDKR 254
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>RS4Y1_HUMAN (P22090) 40S ribosomal protein S4, Y isoform 1|
          Length = 262

 Score = 96.3 bits (238), Expect = 3e-20
 Identities = 45/88 (51%), Positives = 57/88 (64%)
 Frame = -1

Query: 433 KIVXFIKFDXXXXXXXXXXXXXXXXXVIKNREKHKGTFXTIHVEXAQGHQFATRLGNVFT 254
           KI+ FIKFD                 VI NRE+H G+F  +HV+ A G+ FATRL N+F 
Sbjct: 167 KIINFIKFDTGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFV 226

Query: 253 IGKGTKPWVSLPKGKGIKLTIIEEQRKR 170
           IG G KPW+SLP+GKGI+LT+ EE+ KR
Sbjct: 227 IGNGNKPWISLPRGKGIRLTVAEERDKR 254
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>RS4Y1_PONPY (Q861U7) 40S ribosomal protein S4, Y isoform 1|
          Length = 262

 Score = 95.9 bits (237), Expect = 4e-20
 Identities = 45/88 (51%), Positives = 57/88 (64%)
 Frame = -1

Query: 433 KIVXFIKFDXXXXXXXXXXXXXXXXXVIKNREKHKGTFXTIHVEXAQGHQFATRLGNVFT 254
           KI+ FIKFD                 VI NRE+H G+F  +HV+ A G+ FATR+ N+F 
Sbjct: 167 KIINFIKFDTGNVCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRISNIFV 226

Query: 253 IGKGTKPWVSLPKGKGIKLTIIEEQRKR 170
           IG G KPW+SLP+GKGI+LTI EE+ KR
Sbjct: 227 IGNGNKPWISLPRGKGIRLTIAEERDKR 254
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>RS4Y1_GORGO (Q861U8) 40S ribosomal protein S4, Y isoform 1|
          Length = 262

 Score = 95.5 bits (236), Expect = 5e-20
 Identities = 44/88 (50%), Positives = 57/88 (64%)
 Frame = -1

Query: 433 KIVXFIKFDXXXXXXXXXXXXXXXXXVIKNREKHKGTFXTIHVEXAQGHQFATRLGNVFT 254
           KI+ FIKFD                 VI NRE+H G+F  +HV+ A G+ FATR+ N+F 
Sbjct: 167 KIINFIKFDTGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRISNIFV 226

Query: 253 IGKGTKPWVSLPKGKGIKLTIIEEQRKR 170
           IG G KPW+SLP+GKGI+LT+ EE+ KR
Sbjct: 227 IGNGNKPWISLPRGKGIRLTVAEERDKR 254
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>RS4Y1_MACFU (P79183) 40S ribosomal protein S4, Y isoform 1|
          Length = 262

 Score = 95.1 bits (235), Expect = 6e-20
 Identities = 45/88 (51%), Positives = 56/88 (63%)
 Frame = -1

Query: 433 KIVXFIKFDXXXXXXXXXXXXXXXXXVIKNREKHKGTFXTIHVEXAQGHQFATRLGNVFT 254
           KI  FIKFD                 VI NRE+H G+F  +HV+ A G+ FATR+ N+F 
Sbjct: 167 KITSFIKFDTGNVCMVIGGANLGRVGVITNRERHPGSFDVVHVKDASGNSFATRISNIFV 226

Query: 253 IGKGTKPWVSLPKGKGIKLTIIEEQRKR 170
           IG G KPW+SLP+GKGI+LTI EE+ KR
Sbjct: 227 IGNGNKPWISLPRGKGIRLTIAEERDKR 254
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>RS4X_BRARE (Q642H9) 40S ribosomal protein S4, X isoform|
          Length = 262

 Score = 95.1 bits (235), Expect = 6e-20
 Identities = 46/88 (52%), Positives = 57/88 (64%)
 Frame = -1

Query: 433 KIVXFIKFDXXXXXXXXXXXXXXXXXVIKNREKHKGTFXTIHVEXAQGHQFATRLGNVFT 254
           KI  FIKF+                 VI NREKH G+F  +HV+ + G+ FATRL N+F 
Sbjct: 167 KITDFIKFETGNMCMVTGGANLGRIGVITNREKHPGSFDVVHVKDSIGNSFATRLSNIFV 226

Query: 253 IGKGTKPWVSLPKGKGIKLTIIEEQRKR 170
           IGKG KPWVSLP+GKG++LTI EE+ KR
Sbjct: 227 IGKGNKPWVSLPRGKGVRLTIAEERDKR 254
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>RS4Y1_PANTR (Q861U9) 40S ribosomal protein S4, Y isoform 1|
          Length = 262

 Score = 94.0 bits (232), Expect = 1e-19
 Identities = 44/88 (50%), Positives = 56/88 (63%)
 Frame = -1

Query: 433 KIVXFIKFDXXXXXXXXXXXXXXXXXVIKNREKHKGTFXTIHVEXAQGHQFATRLGNVFT 254
           KI+ FIKFD                 VI NRE+H G+F  +HV+ A G+ FATRL N+F 
Sbjct: 167 KIINFIKFDTGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFV 226

Query: 253 IGKGTKPWVSLPKGKGIKLTIIEEQRKR 170
           IG G KPW+SLP+GKGI+LT+  E+ KR
Sbjct: 227 IGNGNKPWISLPRGKGIRLTVAAERDKR 254
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>RS4Y1_PANPA (Q861V0) 40S ribosomal protein S4, Y isoform 1|
          Length = 262

 Score = 94.0 bits (232), Expect = 1e-19
 Identities = 44/88 (50%), Positives = 56/88 (63%)
 Frame = -1

Query: 433 KIVXFIKFDXXXXXXXXXXXXXXXXXVIKNREKHKGTFXTIHVEXAQGHQFATRLGNVFT 254
           KI+ FIKFD                 VI NRE+H G+F  +HV+ A G+ FATRL N+F 
Sbjct: 167 KIINFIKFDTGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFV 226

Query: 253 IGKGTKPWVSLPKGKGIKLTIIEEQRKR 170
           IG G KPW+SLP+GKGI+LT+  E+ KR
Sbjct: 227 IGNGNKPWISLPRGKGIRLTVAAERDKR 254
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>RS4_DROME (P41042) 40S ribosomal protein S4|
          Length = 261

 Score = 94.0 bits (232), Expect = 1e-19
 Identities = 44/88 (50%), Positives = 57/88 (64%)
 Frame = -1

Query: 433 KIVXFIKFDXXXXXXXXXXXXXXXXXVIKNREKHKGTFXTIHVEXAQGHQFATRLGNVFT 254
           KI  +IKFD                  + NRE+H G+F  +H++ +QGH FATRL NVF 
Sbjct: 168 KITDYIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFI 227

Query: 253 IGKGTKPWVSLPKGKGIKLTIIEEQRKR 170
           IGKG KP++SLPKGKG+KL+I EE+ KR
Sbjct: 228 IGKGNKPYISLPKGKGVKLSIAEERDKR 255
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>RS4_ICTPU (Q90YS0) 40S ribosomal protein S4|
          Length = 262

 Score = 92.8 bits (229), Expect = 3e-19
 Identities = 45/88 (51%), Positives = 56/88 (63%)
 Frame = -1

Query: 433 KIVXFIKFDXXXXXXXXXXXXXXXXXVIKNREKHKGTFXTIHVEXAQGHQFATRLGNVFT 254
           KI  FIKFD                 VI NRE+H G+F  +HV+ + G+ FATRL N+F 
Sbjct: 167 KITEFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDSTGNSFATRLSNIFV 226

Query: 253 IGKGTKPWVSLPKGKGIKLTIIEEQRKR 170
           IGKG K WVS+P+GKGI+LTI EE+ KR
Sbjct: 227 IGKGNKAWVSIPRGKGIRLTIAEERDKR 254
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>RS4Y2_HUMAN (Q8TD47) 40S ribosomal protein S4, Y isoform 2|
          Length = 262

 Score = 92.4 bits (228), Expect = 4e-19
 Identities = 44/88 (50%), Positives = 55/88 (62%)
 Frame = -1

Query: 433 KIVXFIKFDXXXXXXXXXXXXXXXXXVIKNREKHKGTFXTIHVEXAQGHQFATRLGNVFT 254
           KI  FIKFD                 VI NRE+H G+   +HV+ A G+ FATR+ N+F 
Sbjct: 167 KITSFIKFDTGNVCMVIAGANLGRVGVITNRERHPGSCDVVHVKDANGNSFATRISNIFV 226

Query: 253 IGKGTKPWVSLPKGKGIKLTIIEEQRKR 170
           IG G KPW+SLP+GKGI+LTI EE+ KR
Sbjct: 227 IGNGNKPWISLPRGKGIRLTIAEERDKR 254
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>RS4Y2_PANTR (Q6GVM7) 40S ribosomal protein S4, Y isoform 2|
          Length = 262

 Score = 91.7 bits (226), Expect = 7e-19
 Identities = 43/88 (48%), Positives = 55/88 (62%)
 Frame = -1

Query: 433 KIVXFIKFDXXXXXXXXXXXXXXXXXVIKNREKHKGTFXTIHVEXAQGHQFATRLGNVFT 254
           KI  FIKFD                 V+ NRE+H G+   +HV+ A G+ FATR+ N+F 
Sbjct: 167 KITSFIKFDTGNVCMVIGGANLGRVGVVTNRERHPGSCDVVHVKDANGNSFATRISNIFV 226

Query: 253 IGKGTKPWVSLPKGKGIKLTIIEEQRKR 170
           IG G KPW+SLP+GKGI+LTI EE+ KR
Sbjct: 227 IGNGNKPWISLPRGKGIRLTIAEERDKR 254
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>RS4B_SCHPO (Q9USW5) 40S ribosomal protein S4-B|
          Length = 262

 Score = 85.9 bits (211), Expect = 4e-17
 Identities = 43/89 (48%), Positives = 53/89 (59%)
 Frame = -1

Query: 436 NKIVXFIKFDXXXXXXXXXXXXXXXXXVIKNREKHKGTFXTIHVEXAQGHQFATRLGNVF 257
           NKI  FIKFD                  I +RE H G+F  IHV+ A   +FATRL NVF
Sbjct: 167 NKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVF 226

Query: 256 TIGKGTKPWVSLPKGKGIKLTIIEEQRKR 170
            IG+  K W+SLPKGKG+KL+I EE+ +R
Sbjct: 227 VIGEAGKSWISLPKGKGVKLSITEERDRR 255
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>RS4C_SCHPO (Q9P4W9) 40S ribosomal protein S4-C|
          Length = 262

 Score = 85.1 bits (209), Expect = 7e-17
 Identities = 43/89 (48%), Positives = 53/89 (59%)
 Frame = -1

Query: 436 NKIVXFIKFDXXXXXXXXXXXXXXXXXVIKNREKHKGTFXTIHVEXAQGHQFATRLGNVF 257
           NKI  FIKFD                  I +RE H G+F  IHV+ A   +FATRL NVF
Sbjct: 167 NKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVF 226

Query: 256 TIGKGTKPWVSLPKGKGIKLTIIEEQRKR 170
            IG+  K W+SLPKGKG+KL+I EE+ +R
Sbjct: 227 VIGETGKSWISLPKGKGVKLSITEERDRR 255
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>RS4A_SCHPO (P87158) 40S ribosomal protein S4-A|
          Length = 262

 Score = 85.1 bits (209), Expect = 7e-17
 Identities = 43/89 (48%), Positives = 53/89 (59%)
 Frame = -1

Query: 436 NKIVXFIKFDXXXXXXXXXXXXXXXXXVIKNREKHKGTFXTIHVEXAQGHQFATRLGNVF 257
           NKI  FIKFD                  I +RE H G+F  IHV+ A   +FATRL NVF
Sbjct: 167 NKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVF 226

Query: 256 TIGKGTKPWVSLPKGKGIKLTIIEEQRKR 170
            IG+  K W+SLPKGKG+KL+I EE+ +R
Sbjct: 227 VIGETGKSWISLPKGKGVKLSITEERDRR 255
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>RS4_YARLI (O59950) 40S ribosomal protein S4 (S7)|
          Length = 260

 Score = 79.0 bits (193), Expect = 5e-15
 Identities = 39/88 (44%), Positives = 52/88 (59%)
 Frame = -1

Query: 433 KIVXFIKFDXXXXXXXXXXXXXXXXXVIKNREKHKGTFXTIHVEXAQGHQFATRLGNVFT 254
           KI  F+KF+                  I +RE+H+G F  +H++ A  +QF TRL NVF 
Sbjct: 168 KITSFVKFENGNIVMTTGGRNMGRVGTITHRERHEGGFDIVHIKDALDNQFVTRLTNVFV 227

Query: 253 IGKGTKPWVSLPKGKGIKLTIIEEQRKR 170
           IG+G K  +SLPKGKGIKL+I EE+  R
Sbjct: 228 IGEGNKSLISLPKGKGIKLSIAEERDAR 255
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>RS4_YEAST (P05753) 40S ribosomal protein S4 (S7) (YS6) (RP5)|
          Length = 260

 Score = 77.4 bits (189), Expect = 1e-14
 Identities = 38/88 (43%), Positives = 52/88 (59%)
 Frame = -1

Query: 433 KIVXFIKFDXXXXXXXXXXXXXXXXXVIKNREKHKGTFXTIHVEXAQGHQFATRLGNVFT 254
           KI  FIKFD                  I ++E+H G F  +H++ +  + F TRL NVF 
Sbjct: 167 KITDFIKFDAGKLVYVTGGRNLGRIGTIVHKERHDGGFDLVHIKDSLDNTFVTRLNNVFV 226

Query: 253 IGKGTKPWVSLPKGKGIKLTIIEEQRKR 170
           IG+  KP++SLPKGKGIKL+I EE+ +R
Sbjct: 227 IGEQGKPYISLPKGKGIKLSIAEERDRR 254
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>RS4_CANAL (P47837) 40S ribosomal protein S4 (S7)|
          Length = 262

 Score = 76.3 bits (186), Expect = 3e-14
 Identities = 43/89 (48%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
 Frame = -1

Query: 433 KIVXFIKFDXXXXXXXXXXXXXXXXXVIKNREKHKGTFXTIHVEXAQGHQFATRLGNVFT 254
           KI  FIKFD                 VI +REK +G F  +H++ A  + F TRL NVF 
Sbjct: 168 KIXSFIKFDTGRLVMVTGGRNLGRVGVIVHREKLEGGFDLVHIKDALENTFVTRLSNVFV 227

Query: 253 IG-KGTKPWVSLPKGKGIKLTIIEEQRKR 170
           IG +  KPWVSLPKGKGIKL+I EE+ +R
Sbjct: 228 IGTEAGKPWVSLPKGKGIKLSISEERDRR 256
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>RS4_DICDI (P51405) 40S ribosomal protein S4|
          Length = 266

 Score = 73.2 bits (178), Expect = 3e-13
 Identities = 35/85 (41%), Positives = 49/85 (57%)
 Frame = -1

Query: 433 KIVXFIKFDXXXXXXXXXXXXXXXXXVIKNREKHKGTFXTIHVEXAQGHQFATRLGNVFT 254
           KI  FI F+                  + +REKH G+F  +HV    GHQFATRL NVF 
Sbjct: 167 KITAFIPFEVNNLCMIVGGHNLGRVGAVTHREKHPGSFDIVHVTDTAGHQFATRLSNVFI 226

Query: 253 IGKGTKPWVSLPKGKGIKLTIIEEQ 179
           IGK ++ +VSLP GKG++ + ++E+
Sbjct: 227 IGKASQTFVSLPAGKGVRRSRVDER 251
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>RS4_CAEEL (Q9N3X2) 40S ribosomal protein S4|
          Length = 259

 Score = 70.1 bits (170), Expect = 2e-12
 Identities = 37/88 (42%), Positives = 49/88 (55%)
 Frame = -1

Query: 433 KIVXFIKFDXXXXXXXXXXXXXXXXXVIKNREKHKGTFXTIHVEXAQGHQFATRLGNVFT 254
           KI   +KF+                 +I +RE+  G    IH++ + GH FATR+ NVF 
Sbjct: 167 KITDSVKFEPGNLAYVTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFV 226

Query: 253 IGKGTKPWVSLPKGKGIKLTIIEEQRKR 170
           IGKG K  VSLP G GI+L+I EE+ KR
Sbjct: 227 IGKGNKALVSLPTGAGIRLSIAEERDKR 254
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>RS4_HORSE (P55832) 40S ribosomal protein S4 (Fragment)|
          Length = 194

 Score = 34.7 bits (78), Expect = 0.10
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = -1

Query: 433 KIVXFIKFDXXXXXXXXXXXXXXXXXVIKNREKHKGTFXTIHVEXA 296
           KI  FIKFD                 VI NRE+H G+F  +HV+ A
Sbjct: 149 KITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDA 194
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>RS4_BOVIN (P79103) 40S ribosomal protein S4 (Fragment)|
          Length = 194

 Score = 34.7 bits (78), Expect = 0.10
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = -1

Query: 433 KIVXFIKFDXXXXXXXXXXXXXXXXXVIKNREKHKGTFXTIHVEXA 296
           KI  FIKFD                 VI NRE+H G+F  +HV+ A
Sbjct: 149 KITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDA 194
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>LRP2_RAT (P98158) Low-density lipoprotein receptor-related protein 2 precursor|
            (Megalin) (Glycoprotein 330) (gp330)
          Length = 4660

 Score = 33.1 bits (74), Expect = 0.30
 Identities = 23/83 (27%), Positives = 37/83 (44%)
 Frame = +1

Query: 43   IQAKLKKXGSRNIVLYPCR*LAIAKRLNASAIRPWQQPELRHPSSSAPQ*W*A*YPCPWG 222
            +QA     G++++V+Y     ++ + L  +AI P +QP  R+P +SA         C   
Sbjct: 1667 MQANKWHGGNQSVVMY-----SVHQPLGITAIHPSRQPPSRNPCASA--------SCSHL 1713

Query: 223  GSPKAWCPCQW*TRCPDGWQTGD 291
                A  P  +   CP GW   D
Sbjct: 1714 CLLSAQAPRHYSCACPSGWNLSD 1736
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>YCGV_ECO57 (Q8X583) Hypothetical protein ycgV|
          Length = 547

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 328 GTFXTIHVEXAQGHQFATRLGNVFTIGKGTKPW 230
           GTF T++VE   G+       +V   G G KPW
Sbjct: 514 GTFTTLNVENLSGNSTFIMRADVVGEGNGVKPW 546
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>Y977_HAEDU (Q7VMJ8) UPF0078 membrane protein HD_0977|
          Length = 199

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
 Frame = +2

Query: 251 NGEH------VAQTGGKLVTLGXLNVDGLKGSLMLL 340
           NG H      V + GGKL  +G L  D LKGSL +L
Sbjct: 36  NGSHNPGATNVLRNGGKLAAIGVLLFDTLKGSLPVL 71
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>FOSB_BACLD (Q65KJ5) Metallothiol transferase fosB (EC 2.5.1.-) (Fosfomycin|
           resistance protein)
          Length = 154

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = -1

Query: 352 IKNREKHKGTFXTIHVEXAQGHQFATRLGNVF---TIGKGTKPWVSLPKG 212
           +K R++H+G   +I+     GH+F    G+VF      +  KP +S  +G
Sbjct: 95  LKGRKRHEGDRDSIYFSDPDGHKFELHTGSVFDRLQYYQNEKPHLSFHEG 144
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>BAT3_RAT (Q6MG49) Large proline-rich protein BAT3 (HLA-B-associated|
           transcript 3)
          Length = 1096

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 308 VDGLKGSLMLLPVLDHTNTPSVAPTS 385
           V GL G L++ PVL    TP +AP S
Sbjct: 535 VSGLVGQLLMQPVLVAQGTPGMAPAS 560
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>INAA_ECOLI (P27294) Protein inaA|
          Length = 216

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -3

Query: 137 IAEALSRFAIASYLQGYRTMFLEPXFLSFACMFVDXRTHGCC 12
           IA+  ++ A++ Y    R   L+   L+F  M    R HGCC
Sbjct: 113 IADWYAQHAVSPYSDEVRQAMLKAVALAFKKMHSINRQHGCC 154


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,283,259
Number of Sequences: 219361
Number of extensions: 1050673
Number of successful extensions: 2569
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 2475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2563
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2511994855
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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