>SC24A_HUMAN (O95486) Protein transport protein Sec24A (SEC24-related protein A)|
           (Fragment)
          Length = 1078

 Score = 33.9 bits (76), Expect = 0.47
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
 Frame = -1

Query: 516 PSTPQRFWLPLLHDSVKLLNCKPH----PLLNVAETTLLLNK 403
           PSTP +  +P LH+ ++ LNC P      L ++ +T  LLNK
Sbjct: 346 PSTPLKPPVPNLHEDIQKLNCNPELFRCTLTSIPQTQALLNK 387

>POLG_HCVEU (O39927) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3017

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 10/80 (12%)
 Frame = -1

Query: 495  WLPLLH-----DSVKLLNCKPHPLLNVAETTLLLNKLQEL-----SMAKLRPDFCSNHLP 346
            W+P L      DS+ LL C  HP L    T +LL  L  L     S+ K+ P F   H+ 
Sbjct: 863  WVPDLRVRGGRDSIILLTCLLHPQLGFEVTKILLAVLAPLYILQYSLLKV-PYFVRAHIL 921

Query: 345  IHALSSVRLALGSNLARAIL 286
            + A   VR   G    +A L
Sbjct: 922  LRACLLVRRLAGGKYVQACL 941

>POLG_HCV6A (Q5I2N3) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3018

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 10/80 (12%)
 Frame = -1

Query: 495  WLPLLH-----DSVKLLNCKPHPLLNVAETTLLLNKLQEL-----SMAKLRPDFCSNHLP 346
            W+P L      DS+ LL C  HP L    T +LL  L  L     S+ K+ P F   H+ 
Sbjct: 864  WVPDLRVRGGRDSIILLTCLLHPQLGFEVTKILLAILAPLYILQYSLLKV-PYFVRAHIL 922

Query: 345  IHALSSVRLALGSNLARAIL 286
            + A   VR   G    +A L
Sbjct: 923  LRACLLVRRLAGGRYVQACL 942

>SPT4H_CAEBR (Q628A6) Transcription elongation factor SPT4 (DRB|
           sensitivity-inducing factor small subunit) (DSIF small
           subunit)
          Length = 120

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = -3

Query: 682 GRVARATRFRHW*CRWS*VPSQVPGFQEIPSTGTRRKNRRGCSADRGVSYTANEKSF 512
           G +A  +    W C+W  +  +V G   I  +G+   N        GV Y AN++ +
Sbjct: 58  GMIAAMSNDDSWVCKWQKMQRRVKGIYAISVSGSLPSNVVSDLKSMGVRYKANQRDY 114

>MURB_AGRT5 (Q8UDN0) UDP-N-acetylenolpyruvoylglucosamine reductase (EC|
           1.1.1.158) (UDP-N-acetylmuramate dehydrogenase)
          Length = 321

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = +3

Query: 234 RHQTGA----NPPPDTAFKLLQEWHGRGLIPGPT*QSSVH 341
           R QTG     NP   +A++L+ E  GRGL+ G    SS+H
Sbjct: 226 REQTGGSTFKNPEGHSAWELIDEAGGRGLVIGGAQMSSLH 265

>EGO_ECOLI (P77257) Putative ABC transporter ATP-binding protein ego (EGO10A)|
          Length = 511

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 28/80 (35%), Positives = 35/80 (43%)
 Frame = -1

Query: 585 ALEGRTGEAARQTVEFLIQLMRNPSTPQRFWLPLLHDSVKLLNCKPHPLLNVAETTLLLN 406
           +L G    A RQ VE L  LMR              DS  L+  +P   L  AET  L +
Sbjct: 136 SLAGSLDVADRQMVEILRGLMR--------------DSRILILDEPTASLTPAETERLFS 181

Query: 405 KLQELSMAKLRPDFCSNHLP 346
           +LQEL    +   F S+ LP
Sbjct: 182 RLQELLATGVGIVFISHKLP 201

>SC24A_MOUSE (Q3U2P1) Protein transport protein Sec24A (SEC24-related protein A)|
          Length = 1090

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
 Frame = -1

Query: 516 PSTPQRFWLPLLHDSVKLLNCKPH----PLLNVAETTLLLNK 403
           PSTP +  +P L + ++ LNC P      L +V +T  LLNK
Sbjct: 358 PSTPLQPPVPNLLEDIQKLNCNPELFRCTLTSVPQTQALLNK 399

>PGMP_PEA (Q9SM59) Phosphoglucomutase, chloroplast precursor (EC 5.4.2.2)|
           (Glucose phosphomutase) (PGM)
          Length = 626

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 17  LXVH*XFSNMPGFLPNDTVTSTPLRIKYDRQLRSPKLKTIDGTSMAEP 160
           L +H   SN P F     V + P R++Y+  +R+    +   T++AEP
Sbjct: 24  LSIHHSSSNFPSF----KVQNFPFRVRYNSAIRATSSSSSTPTTIAEP 67


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,096,567
Number of Sequences: 219361
Number of extensions: 1880710
Number of successful extensions: 4637
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4636
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6769072002
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)