>gb|AC117198.3| Mus musculus BAC clone RP23-127K18 from 9, complete sequence
          Length = 193044

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 130   cagagaagtcaggaaagaaggatcatg 156
             ||||||||||||||| |||||||||||
Sbjct: 79309 cagagaagtcaggaaggaaggatcatg 79283

>ref|NM_001004926.1| Xenopus tropicalis MGC89106 protein (MGC89106), mRNA
          Length = 2861

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 295  tgttatcaacataacaatataaataat 321
            |||||||| ||||||||||||||||||
Sbjct: 1099 tgttatcagcataacaatataaataat 1073

>gb|BC075383.1| Xenopus tropicalis MGC89106 protein, mRNA (cDNA clone MGC:89106
            IMAGE:7006531), complete cds
          Length = 2861

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 295  tgttatcaacataacaatataaataat 321
            |||||||| ||||||||||||||||||
Sbjct: 1099 tgttatcagcataacaatataaataat 1073

>emb|CT025660.9| Mouse DNA sequence from clone RP24-79I19 on chromosome 9, complete
              sequence
          Length = 219226

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 130    cagagaagtcaggaaagaaggatcatg 156
              ||||||||||||||| |||||||||||
Sbjct: 186355 cagagaagtcaggaaggaaggatcatg 186381

>emb|AL157413.18| Human DNA sequence from clone RP11-526K17 on chromosome 20 Contains a
             novel gene and part of the C20orf39 gene for chromosome 20
             open reading frame 39, complete sequence
          Length = 133207

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 343   aacagtaaaccaaagaacagct 364
             ||||||||||||||||||||||
Sbjct: 66592 aacagtaaaccaaagaacagct 66571

>gb|AC126271.4| Mus musculus BAC clone RP23-237H9 from chromosome 5, complete sequence
          Length = 194736

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 97     tcatcctaagagactgtgaga 117
              |||||||||||||||||||||
Sbjct: 100703 tcatcctaagagactgtgaga 100683

>gb|AC098726.2| Mus musculus BAC clone RP23-3E20 from 17, complete sequence
          Length = 195690

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 323    tgcagataatgtgaccctgga 343
              |||||||||||||||||||||
Sbjct: 124839 tgcagataatgtgaccctgga 124819

>ref|XM_720976.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY00070)
            partial mRNA
          Length = 2877

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 297  ttatcaacataacaatataaataat 321
            |||||||||||| ||||||||||||
Sbjct: 2421 ttatcaacataataatataaataat 2445

>ref|XM_724125.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY01452)
           partial mRNA
          Length = 1992

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 302 aacataacaatataaataatg 322
           |||||||||||||||||||||
Sbjct: 452 aacataacaatataaataatg 472

>ref|XM_674764.1| Plasmodium berghei strain ANKA hypothetical protein (PB001080.01.0)
           partial mRNA
          Length = 2103

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 302 aacataacaatataaataatg 322
           |||||||||||||||||||||
Sbjct: 653 aacataacaatataaataatg 673

>gb|AC101821.14| Mus musculus chromosome 17, clone RP24-392L10, complete sequence
          Length = 132393

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 323    tgcagataatgtgaccctgga 343
              |||||||||||||||||||||
Sbjct: 122302 tgcagataatgtgaccctgga 122282

>gb|AC083962.3| Homo sapiens chromosome , clone RP11-90O15, complete sequence
          Length = 38850

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 316   aataatgtgcagataatgtga 336
             |||||||||||||||||||||
Sbjct: 14682 aataatgtgcagataatgtga 14662

>gb|AC011773.9| Homo sapiens chromosome 8, clone RP11-219B4, complete sequence
          Length = 160283

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 316   aataatgtgcagataatgtga 336
             |||||||||||||||||||||
Sbjct: 10974 aataatgtgcagataatgtga 10954

>gb|AC022325.5| Homo sapiens BAC clone RP11-391J13 from 4, complete sequence
          Length = 193057

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 351  accaaagaacagcttgaatag 371
            |||||||||||||||||||||
Sbjct: 3450 accaaagaacagcttgaatag 3470

>ref|NG_002690.1| Homo sapiens Prader-Willi/Angelman syndrome region (PWSAS@) on chromosome
              15
          Length = 755217

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 245    ctgcatagagaaatagataa 264
              ||||||||||||||||||||
Sbjct: 482407 ctgcatagagaaatagataa 482426

>gb|AC117677.9| Mus musculus chromosome 7, clone RP23-421G2, complete sequence
          Length = 249789

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 302  aacataacaatataaataat 321
            ||||||||||||||||||||
Sbjct: 3471 aacataacaatataaataat 3452

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 173     taactgctgcattagagcag 192
               ||||||||||||||||||||
Sbjct: 4016596 taactgctgcattagagcag 4016577

>ref|XM_720874.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY05498)
            partial mRNA
          Length = 4786

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 304  cataacaatataaataatgt 323
            ||||||||||||||||||||
Sbjct: 2950 cataacaatataaataatgt 2931

>emb|AL627069.10| Mouse DNA sequence from clone RP23-385C16 on chromosome 11 Contains the
             Mrps24 gene for mitochondrial ribosomal protein S24, a
             novel gene, a ubiquitin-conjugating enzyme E2D (Ube2d)
             pseudogene, the Dbnl gene for drebrin-like, the Pgam2 gene
             for phosphoglycerate mutase 2, a pseudogene similar to
             part of H+ transporting mitochondrial F0 complex ATP
             synthase subunit F Atp5j, the Polm gene for polymerase
             (DNA directed) mu, the Aebp1 gene for AE binding protein
             1, the Pold2 gene for polymerase (DNA directed) delta 2
             regulatory subunit, novel gene (1600028I17Rik) and seven
             CpG islands, complete sequence
          Length = 195129

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 130   cagagaagtcaggaaagaag 149
             ||||||||||||||||||||
Sbjct: 59202 cagagaagtcaggaaagaag 59183

>gb|AC164000.2| Mus musculus chromosome 7, clone RP23-157G7, complete sequence
          Length = 206022

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 302    aacataacaatataaataat 321
              ||||||||||||||||||||
Sbjct: 166623 aacataacaatataaataat 166642

>gb|AC153153.4| Mus musculus BAC clone RP23-79G18 from chromosome 13, complete sequence
          Length = 222383

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 95     actcatcctaagagactgtg 114
              ||||||||||||||||||||
Sbjct: 116831 actcatcctaagagactgtg 116850

>emb|CR450798.13| Zebrafish DNA sequence from clone DKEY-21P1 in linkage group 8, complete
              sequence
          Length = 194659

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 255    aaatagataatcacttttta 274
              ||||||||||||||||||||
Sbjct: 184199 aaatagataatcacttttta 184180

>emb|BX510940.8| Zebrafish DNA sequence from clone DKEYP-69C1 in linkage group 21,
              complete sequence
          Length = 172605

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 180    tgcattagagcagacaaaac 199
              ||||||||||||||||||||
Sbjct: 138043 tgcattagagcagacaaaac 138062

>gb|AC100774.2| Homo sapiens chromosome , clone RP13-487P22, complete sequence
          Length = 183426

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 245   ctgcatagagaaatagataa 264
             ||||||||||||||||||||
Sbjct: 59713 ctgcatagagaaatagataa 59732

>gb|L63545.1|CYSCG Lymphocystis disease virus 1, complete genome
          Length = 102653

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 287  acccctggtgttatcaacataaca 310
            |||| |||||||||||||||||||
Sbjct: 8428 acccttggtgttatcaacataaca 8451

>gb|AC090643.22| Homo sapiens 12q BAC RP11-489P6 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 52154

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 307  aacaatataaataatgtgca 326
            ||||||||||||||||||||
Sbjct: 2552 aacaatataaataatgtgca 2571

>gb|AC090484.4| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0061L19, from chromosome 3, complete sequence
          Length = 153322

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 173   taactgctgcattagagcag 192
             ||||||||||||||||||||
Sbjct: 82772 taactgctgcattagagcag 82791

>gb|AF250841.1|AF250841 Homo sapiens PAC clones A17157 and P0950 imprinted HBII-85 and HBII-52
              small nucleolar RNA genes, complete sequence
          Length = 228017

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 245    ctgcatagagaaatagataa 264
              ||||||||||||||||||||
Sbjct: 175684 ctgcatagagaaatagataa 175703

>ref|NM_078129.1| Caenorhabditis elegans F46F2.1 (F46F2.1) mRNA, complete cds
          Length = 2325

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 129  gcagagaagtcaggaaagaa 148
            ||||||||||||||||||||
Sbjct: 1689 gcagagaagtcaggaaagaa 1708

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 173     taactgctgcattagagcag 192
               ||||||||||||||||||||
Sbjct: 4016707 taactgctgcattagagcag 4016688

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                        
Query: 210      gagatattgagcacgttgacaacatcattgttcagctgca 249
                |||||||| || || ||||||||||||||| | |||||||
Sbjct: 30398467 gagatatttagtacattgacaacatcattggtgagctgca 30398428

>dbj|AP003142.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0435H01
          Length = 160141

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                     
Query: 210   gagatattgagcacgttgacaacatcattgttcagctgca 249
             |||||||| || || ||||||||||||||| | |||||||
Sbjct: 26730 gagatatttagtacattgacaacatcattggtgagctgca 26691

>dbj|AP002899.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0456A01
          Length = 143710

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                     
Query: 210   gagatattgagcacgttgacaacatcattgttcagctgca 249
             |||||||| || || ||||||||||||||| | |||||||
Sbjct: 84194 gagatatttagtacattgacaacatcattggtgagctgca 84155

>emb|Z69903.1|CEF46F2 Caenorhabditis elegans Cosmid F46F2, complete sequence
          Length = 37248

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 129   gcagagaagtcaggaaagaa 148
             ||||||||||||||||||||
Sbjct: 11248 gcagagaagtcaggaaagaa 11267

>gb|AC112266.6| Mus musculus BAC clone RP23-422B6 from 13, complete sequence
          Length = 190943

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 95    actcatcctaagagactgtg 114
             ||||||||||||||||||||
Sbjct: 61236 actcatcctaagagactgtg 61255

>dbj|AP006107.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT29P11, TM0193,
             complete sequence
          Length = 102354

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 313   ataaataatgtgcagataat 332
             ||||||||||||||||||||
Sbjct: 83847 ataaataatgtgcagataat 83828


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,936,071
Number of Sequences: 3902068
Number of extensions: 3936071
Number of successful extensions: 95836
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95670
Number of HSP's gapped (non-prelim): 166
length of query: 437
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 415
effective length of database: 17,147,199,772
effective search space: 7116087905380
effective search space used: 7116087905380
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)