| Clone Name | rbags5p08 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ132240.1|ZMA132240 Zea mays eIF-5 gene, exons 1-2 Length = 6831 Score = 159 bits (80), Expect = 2e-35 Identities = 284/352 (80%) Strand = Plus / Minus Query: 275 tcatcagattcggcgctctggagccactccacgaccggcttggcgttcttcacgacctgg 334 |||||||| ||||| |||||||||||||| |||| ||||||||| ||||| || |||||| Sbjct: 4881 tcatcagactcggcactctggagccactcgacgaacggcttggcattcttgacaacctgg 4822 Query: 335 gagttcttgccggcagcaacagcttcattgtaccactggacaatggtttcttcctcgagg 394 |||| ||| || || || ||||| ||||||||||| | ||||||||||| || || ||| Sbjct: 4821 gagtccttcccagctgcgacagcatcattgtaccagtccacaatggtttcctcgtccagg 4762 Query: 395 acgtctccatcatagagggccttcaggacgacgggaacttccttcagggcttcagcactg 454 | |||||||| |||||||| || ||||| |||||||| |||||||| || |||| || Sbjct: 4761 atatctccatcgtagagggctttgaggacaacgggaacctccttcagcgcctcagggttg 4702 Query: 455 cacttgccacagaacgcctcgatagcctggagcaggagcatctgggacccttcatcaggc 514 ||||| |||| || ||||| || ||||| | ||| || |||||| || ||||| ||| Sbjct: 4701 cacttcccaccaaaagcctcaatggcctgaaccagaagggtctgggcaccctcatctggc 4642 Query: 515 accgcagcagaaaggtacttcttgttcttcaccacttccttcgcaaaccccttgcccgca 574 || ||| | | ||||||||||||||||||||| || || || | || ||||| ||| || Sbjct: 4641 acagcaactgcaaggtacttcttgttcttcacaacctctttggtgaatcccttacccaca 4582 Query: 575 ccatggaagagcgcctcaaagagagcatgcatcacgtccttgggggcaaggg 626 ||| ||||| ||||| | |||||||| ||||||||||| ||||| ||||| Sbjct: 4581 ccaccaaagagagcctccaggagagcattcatcacgtcctgggggggaaggg 4530
>emb|X99517.1|ZMEIF5 Z.mays mRNA for eukaryotic initiation factor-5 Length = 1975 Score = 151 bits (76), Expect = 4e-33 Identities = 283/352 (80%) Strand = Plus / Minus Query: 275 tcatcagattcggcgctctggagccactccacgaccggcttggcgttcttcacgacctgg 334 |||||||| ||||| |||||||||||||| |||| ||||||||| ||||| || |||||| Sbjct: 1682 tcatcagactcggcactctggagccactcgacgaacggcttggcattcttgacaacctgg 1623 Query: 335 gagttcttgccggcagcaacagcttcattgtaccactggacaatggtttcttcctcgagg 394 |||| ||| || || || ||||| ||||||||||| | ||||||||||| || || ||| Sbjct: 1622 gagtccttcccagctgcgacagcatcattgtaccagtccacaatggtttcctcgtccagg 1563 Query: 395 acgtctccatcatagagggccttcaggacgacgggaacttccttcagggcttcagcactg 454 | |||||||| |||||||| || ||||| |||||||| |||||||| || |||| || Sbjct: 1562 atatctccatcgtagagggctttgaggacaacgggaacctccttcagcgcctcagggttg 1503 Query: 455 cacttgccacagaacgcctcgatagcctggagcaggagcatctgggacccttcatcaggc 514 ||||| |||| || ||||| || ||||| | ||| || |||||| || ||||| ||| Sbjct: 1502 cacttcccaccaaaagcctcaatggcctgaaccagaagggtctgggcaccctcatctggc 1443 Query: 515 accgcagcagaaaggtacttcttgttcttcaccacttccttcgcaaaccccttgcccgca 574 || ||| | | ||||||||||||||||||||| || || || | || ||||| ||| || Sbjct: 1442 acagcaactgcaaggtacttcttgttcttcacaacctctttggtgaatcccttacccaca 1383 Query: 575 ccatggaagagcgcctcaaagagagcatgcatcacgtccttgggggcaaggg 626 ||| ||||| ||||| | | |||||| ||||||||||| ||||| ||||| Sbjct: 1382 ccaccaaagagagcctccaggggagcattcatcacgtcctgggggggaaggg 1331
>gb|AY104474.1| Zea mays PCO112790 mRNA sequence Length = 2008 Score = 151 bits (76), Expect = 4e-33 Identities = 274/340 (80%) Strand = Plus / Minus Query: 275 tcatcagattcggcgctctggagccactccacgaccggcttggcgttcttcacgacctgg 334 |||||||| ||||| |||||||||||||| |||| ||||||||| ||||| || |||||| Sbjct: 1743 tcatcagactcggcactctggagccactcgacgaacggcttggcattcttgacaacctgg 1684 Query: 335 gagttcttgccggcagcaacagcttcattgtaccactggacaatggtttcttcctcgagg 394 |||| ||| || || || ||||| ||||||||||| | ||||||||||| || || ||| Sbjct: 1683 gagtccttcccagctgcgacagcatcattgtaccagtccacaatggtttcctcgtccagg 1624 Query: 395 acgtctccatcatagagggccttcaggacgacgggaacttccttcagggcttcagcactg 454 | |||||||| |||||||| || ||||| |||||||| |||||||| || |||| || Sbjct: 1623 atatctccatcgtagagggctttgaggacaacgggaacctccttcagcgcctcagggttg 1564 Query: 455 cacttgccacagaacgcctcgatagcctggagcaggagcatctgggacccttcatcaggc 514 ||||| |||| || ||||| || ||||| | ||| || |||||| || ||||| ||| Sbjct: 1563 cacttcccaccaaaagcctcaatggcctgaaccagaagggtctgggcaccctcatctggc 1504 Query: 515 accgcagcagaaaggtacttcttgttcttcaccacttccttcgcaaaccccttgcccgca 574 || ||| | | ||||||||||||||||||||| || || || | || ||||| ||| || Sbjct: 1503 acagcaactgcaaggtacttcttgttcttcacaacctctttggtgaatcccttacccaca 1444 Query: 575 ccatggaagagcgcctcaaagagagcatgcatcacgtcct 614 ||| ||||| ||||| | |||||||| ||||||||||| Sbjct: 1443 ccaccaaagagagcctccaggagagcattcatcacgtcct 1404
>gb|BT018691.1| Zea mays clone EL01N0512C10.d mRNA sequence Length = 1992 Score = 135 bits (68), Expect = 2e-28 Identities = 221/272 (81%) Strand = Plus / Minus Query: 275 tcatcagattcggcgctctggagccactccacgaccggcttggcgttcttcacgacctgg 334 |||||||| ||||| |||||||||||||| |||| ||| ||||| ||||| || |||||| Sbjct: 1728 tcatcagactcggcactctggagccactcgacgaacgggttggcattcttgacaacctgg 1669 Query: 335 gagttcttgccggcagcaacagcttcattgtaccactggacaatggtttcttcctcgagg 394 |||| ||| || || || ||||| ||||||||||| | ||||||||||| || || ||| Sbjct: 1668 gagtccttcccagctgcgacagcatcattgtaccagtccacaatggtttcctcgtccagg 1609 Query: 395 acgtctccatcatagagggccttcaggacgacgggaacttccttcagggcttcagcactg 454 | |||||||| |||||||| || ||||| |||||||| |||||||| || |||| || Sbjct: 1608 atatctccatcgtagagggctttgaggacaacgggaacctccttcagcgcctcagggttg 1549 Query: 455 cacttgccacagaacgcctcgatagcctggagcaggagcatctgggacccttcatcaggc 514 ||||| |||| || ||||| || ||||| | ||| || |||||| || ||||| ||| Sbjct: 1548 cacttaccaccaaaagcctcaatggcctgaaccagaagggtctgggcaccctcatctggc 1489 Query: 515 accgcagcagaaaggtacttcttgttcttcac 546 || ||| | | ||||||||||||||||||||| Sbjct: 1488 acagcaactgcaaggtacttcttgttcttcac 1457
>gb|AY112315.1| Zea mays CL1308_2 mRNA sequence Length = 840 Score = 133 bits (67), Expect = 9e-28 Identities = 274/343 (79%) Strand = Plus / Minus Query: 272 tcgtcatcagattcggcgctctggagccactccacgaccggcttggcgttcttcacgacc 331 ||||| ||||| |||||||||||||||||||| || | ||||||||| ||||| |||||| Sbjct: 491 tcgtcgtcagactcggcgctctggagccactcgacaaacggcttggcattcttgacgacc 432 Query: 332 tgggagttcttgccggcagcaacagcttcattgtaccactggacaatggtttcttcctcg 391 ||||||| ||| || || || ||||| | |||||||| | |||| |||||| ||||| Sbjct: 431 tgggagtcctttccagctgcgacagcagcgttgtaccagtccacaacggtttcctcctcc 372 Query: 392 aggacgtctccatcatagagggccttcaggacgacgggaacttccttcagggcttcagca 451 |||| ||||| || || ||||| |||||||| || || || |||||||| || || | Sbjct: 371 aggatatctccgtcgtacagggctttcaggacaactgggacctccttcagcgcctcgggg 312 Query: 452 ctgcacttgccacagaacgcctcgatagcctggagcaggagcatctgggacccttcatca 511 ||||||||| | || |||||||| || || | ||| || |||||| || ||||| Sbjct: 311 ttgcacttgctgccaaaagcctcgatggcttgaatcagcagggtctgggcaccctcatct 252 Query: 512 ggcaccgcagcagaaaggtacttcttgttcttcaccacttccttcgcaaaccccttgccc 571 ||||| ||| | | ||||||||||||||||||||| || ||||| ||||| ||||||||| Sbjct: 251 ggcacagcaactgcaaggtacttcttgttcttcacgacctcctttgcaaatcccttgccc 192 Query: 572 gcaccatggaagagcgcctcaaagagagcatgcatcacgtcct 614 |||| | ||||| ||||| | |||||||| ||||||||||| Sbjct: 191 acaccgtcaaagagagcctcgaggagagcattcatcacgtcct 149
>ref|XM_450544.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2008 Score = 103 bits (52), Expect = 8e-19 Identities = 118/140 (84%) Strand = Plus / Minus Query: 278 tcagattcggcgctctggagccactccacgaccggcttggcgttcttcacgacctgggag 337 ||||| || |||||||||||||||||||||| ||||||||| |||||||| |||||||| Sbjct: 1748 tcagaatccgcgctctggagccactccacgaacggcttggcattcttcaccacctgggac 1689 Query: 338 ttcttgccggcagcaacagcttcattgtaccactggacaatggtttcttcctcgaggacg 397 | |||||| ||||||||| |||||| |||||||| || |||||| || |||||| Sbjct: 1688 tccttgccaccagcaacagattcattataccactgagttatcacttcttcatccaggacg 1629 Query: 398 tctccatcatagagggcctt 417 || |||||||| |||||||| Sbjct: 1628 tccccatcatacagggcctt 1609 Score = 54.0 bits (27), Expect = 7e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 485 agcaggagcatctgggacccttcatcaggcaccgcagcagaaaggtacttcttgttcttc 544 ||||||| ||||||||| ||||||||||||| ||||||| ||| | ||||| |||||| Sbjct: 1541 agcaggaccatctgggaggcttcatcaggcacagcagcagcgaggaatttcttcttcttc 1482 Query: 545 accacttcctt 555 || || ||||| Sbjct: 1481 acaacctcctt 1471
>ref|XM_506649.1| PREDICTED Oryza sativa (japonica cultivar-group), P0706E03.4-1 mRNA Length = 2011 Score = 103 bits (52), Expect = 8e-19 Identities = 118/140 (84%) Strand = Plus / Minus Query: 278 tcagattcggcgctctggagccactccacgaccggcttggcgttcttcacgacctgggag 337 ||||| || |||||||||||||||||||||| ||||||||| |||||||| |||||||| Sbjct: 1751 tcagaatccgcgctctggagccactccacgaacggcttggcattcttcaccacctgggac 1692 Query: 338 ttcttgccggcagcaacagcttcattgtaccactggacaatggtttcttcctcgaggacg 397 | |||||| ||||||||| |||||| |||||||| || |||||| || |||||| Sbjct: 1691 tccttgccaccagcaacagattcattataccactgagttatcacttcttcatccaggacg 1632 Query: 398 tctccatcatagagggcctt 417 || |||||||| |||||||| Sbjct: 1631 tccccatcatacagggcctt 1612 Score = 54.0 bits (27), Expect = 7e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 485 agcaggagcatctgggacccttcatcaggcaccgcagcagaaaggtacttcttgttcttc 544 ||||||| ||||||||| ||||||||||||| ||||||| ||| | ||||| |||||| Sbjct: 1544 agcaggaccatctgggaggcttcatcaggcacagcagcagcgaggaatttcttcttcttc 1485 Query: 545 accacttcctt 555 || || ||||| Sbjct: 1484 acaacctcctt 1474
>ref|XM_450545.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1407 Score = 103 bits (52), Expect = 8e-19 Identities = 118/140 (84%) Strand = Plus / Minus Query: 278 tcagattcggcgctctggagccactccacgaccggcttggcgttcttcacgacctgggag 337 ||||| || |||||||||||||||||||||| ||||||||| |||||||| |||||||| Sbjct: 1154 tcagaatccgcgctctggagccactccacgaacggcttggcattcttcaccacctgggac 1095 Query: 338 ttcttgccggcagcaacagcttcattgtaccactggacaatggtttcttcctcgaggacg 397 | |||||| ||||||||| |||||| |||||||| || |||||| || |||||| Sbjct: 1094 tccttgccaccagcaacagattcattataccactgagttatcacttcttcatccaggacg 1035 Query: 398 tctccatcatagagggcctt 417 || |||||||| |||||||| Sbjct: 1034 tccccatcatacagggcctt 1015 Score = 54.0 bits (27), Expect = 7e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 485 agcaggagcatctgggacccttcatcaggcaccgcagcagaaaggtacttcttgttcttc 544 ||||||| ||||||||| ||||||||||||| ||||||| ||| | ||||| |||||| Sbjct: 947 agcaggaccatctgggaggcttcatcaggcacagcagcagcgaggaatttcttcttcttc 888 Query: 545 accacttcctt 555 || || ||||| Sbjct: 887 acaacctcctt 877
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 103 bits (52), Expect = 8e-19 Identities = 118/140 (84%) Strand = Plus / Minus Query: 278 tcagattcggcgctctggagccactccacgaccggcttggcgttcttcacgacctgggag 337 ||||| || |||||||||||||||||||||| ||||||||| |||||||| |||||||| Sbjct: 9584894 tcagaatccgcgctctggagccactccacgaacggcttggcattcttcaccacctgggac 9584835 Query: 338 ttcttgccggcagcaacagcttcattgtaccactggacaatggtttcttcctcgaggacg 397 | |||||| ||||||||| |||||| |||||||| || |||||| || |||||| Sbjct: 9584834 tccttgccaccagcaacagattcattataccactgagttatcacttcttcatccaggacg 9584775 Query: 398 tctccatcatagagggcctt 417 || |||||||| |||||||| Sbjct: 9584774 tccccatcatacagggcctt 9584755 Score = 54.0 bits (27), Expect = 7e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 485 agcaggagcatctgggacccttcatcaggcaccgcagcagaaaggtacttcttgttcttc 544 ||||||| ||||||||| ||||||||||||| ||||||| ||| | ||||| |||||| Sbjct: 9584687 agcaggaccatctgggaggcttcatcaggcacagcagcagcgaggaatttcttcttcttc 9584628 Query: 545 accacttcctt 555 || || ||||| Sbjct: 9584627 acaacctcctt 9584617
>dbj|AP005811.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0706E03 Length = 188028 Score = 103 bits (52), Expect = 8e-19 Identities = 118/140 (84%) Strand = Plus / Minus Query: 278 tcagattcggcgctctggagccactccacgaccggcttggcgttcttcacgacctgggag 337 ||||| || |||||||||||||||||||||| ||||||||| |||||||| |||||||| Sbjct: 24991 tcagaatccgcgctctggagccactccacgaacggcttggcattcttcaccacctgggac 24932 Query: 338 ttcttgccggcagcaacagcttcattgtaccactggacaatggtttcttcctcgaggacg 397 | |||||| ||||||||| |||||| |||||||| || |||||| || |||||| Sbjct: 24931 tccttgccaccagcaacagattcattataccactgagttatcacttcttcatccaggacg 24872 Query: 398 tctccatcatagagggcctt 417 || |||||||| |||||||| Sbjct: 24871 tccccatcatacagggcctt 24852 Score = 54.0 bits (27), Expect = 7e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 485 agcaggagcatctgggacccttcatcaggcaccgcagcagaaaggtacttcttgttcttc 544 ||||||| ||||||||| ||||||||||||| ||||||| ||| | ||||| |||||| Sbjct: 24784 agcaggaccatctgggaggcttcatcaggcacagcagcagcgaggaatttcttcttcttc 24725 Query: 545 accacttcctt 555 || || ||||| Sbjct: 24724 acaacctcctt 24714
>dbj|AB117994.1| Oryza sativa (japonica cultivar-group) bip107 mRNA for BRI1-KD interacting protein 107, partial cds Length = 1430 Score = 103 bits (52), Expect = 8e-19 Identities = 118/140 (84%) Strand = Plus / Minus Query: 278 tcagattcggcgctctggagccactccacgaccggcttggcgttcttcacgacctgggag 337 ||||| || |||||||||||||||||||||| ||||||||| |||||||| |||||||| Sbjct: 1152 tcagaatccgcgctctggagccactccacgaacggcttggcattcttcaccacctgggac 1093 Query: 338 ttcttgccggcagcaacagcttcattgtaccactggacaatggtttcttcctcgaggacg 397 | |||||| ||||||||| |||||| |||||||| || |||||| || |||||| Sbjct: 1092 tccttgccaccagcaacagattcattataccactgagttatcacttcttcatccaggacg 1033 Query: 398 tctccatcatagagggcctt 417 || |||||||| |||||||| Sbjct: 1032 tccccatcatacagggcctt 1013 Score = 54.0 bits (27), Expect = 7e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 485 agcaggagcatctgggacccttcatcaggcaccgcagcagaaaggtacttcttgttcttc 544 ||||||| ||||||||| ||||||||||||| ||||||| ||| | ||||| |||||| Sbjct: 945 agcaggaccatctgggaggcttcatcaggcacagcagcagcgaggaatttcttcttcttc 886 Query: 545 accacttcctt 555 || || ||||| Sbjct: 885 acaacctcctt 875
>dbj|AK098857.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000L01, full insert sequence Length = 2008 Score = 103 bits (52), Expect = 8e-19 Identities = 118/140 (84%) Strand = Plus / Minus Query: 278 tcagattcggcgctctggagccactccacgaccggcttggcgttcttcacgacctgggag 337 ||||| || |||||||||||||||||||||| ||||||||| |||||||| |||||||| Sbjct: 1748 tcagaatccgcgctctggagccactccacgaacggcttggcattcttcaccacctgggac 1689 Query: 338 ttcttgccggcagcaacagcttcattgtaccactggacaatggtttcttcctcgaggacg 397 | |||||| ||||||||| |||||| |||||||| || |||||| || |||||| Sbjct: 1688 tccttgccaccagcaacagattcattataccactgagttatcacttcttcatccaggacg 1629 Query: 398 tctccatcatagagggcctt 417 || |||||||| |||||||| Sbjct: 1628 tccccatcatacagggcctt 1609 Score = 54.0 bits (27), Expect = 7e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 485 agcaggagcatctgggacccttcatcaggcaccgcagcagaaaggtacttcttgttcttc 544 ||||||| ||||||||| ||||||||||||| ||||||| ||| | ||||| |||||| Sbjct: 1541 agcaggaccatctgggaggcttcatcaggcacagcagcagcgaggaatttcttcttcttc 1482 Query: 545 accacttcctt 555 || || ||||| Sbjct: 1481 acaacctcctt 1471
>dbj|AK067685.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116G06, full insert sequence Length = 2010 Score = 103 bits (52), Expect = 8e-19 Identities = 118/140 (84%) Strand = Plus / Minus Query: 278 tcagattcggcgctctggagccactccacgaccggcttggcgttcttcacgacctgggag 337 ||||| || |||||||||||||||||||||| ||||||||| |||||||| |||||||| Sbjct: 1750 tcagaatccgcgctctggagccactccacgaacggcttggcattcttcaccacctgggac 1691 Query: 338 ttcttgccggcagcaacagcttcattgtaccactggacaatggtttcttcctcgaggacg 397 | |||||| ||||||||| |||||| |||||||| || |||||| || |||||| Sbjct: 1690 tccttgccaccagcaacagattcattataccactgagttatcacttcttcatccaggacg 1631 Query: 398 tctccatcatagagggcctt 417 || |||||||| |||||||| Sbjct: 1630 tccccatcatacagggcctt 1611 Score = 54.0 bits (27), Expect = 7e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 485 agcaggagcatctgggacccttcatcaggcaccgcagcagaaaggtacttcttgttcttc 544 ||||||| ||||||||| ||||||||||||| ||||||| ||| | ||||| |||||| Sbjct: 1543 agcaggaccatctgggaggcttcatcaggcacagcagcagcgaggaatttcttcttcttc 1484 Query: 545 accacttcctt 555 || || ||||| Sbjct: 1483 acaacctcctt 1473
>dbj|AK058307.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-H04, full insert sequence Length = 1407 Score = 103 bits (52), Expect = 8e-19 Identities = 118/140 (84%) Strand = Plus / Minus Query: 278 tcagattcggcgctctggagccactccacgaccggcttggcgttcttcacgacctgggag 337 ||||| || |||||||||||||||||||||| ||||||||| |||||||| |||||||| Sbjct: 1154 tcagaatccgcgctctggagccactccacgaacggcttggcattcttcaccacctgggac 1095 Query: 338 ttcttgccggcagcaacagcttcattgtaccactggacaatggtttcttcctcgaggacg 397 | |||||| ||||||||| |||||| |||||||| || |||||| || |||||| Sbjct: 1094 tccttgccaccagcaacagattcattataccactgagttatcacttcttcatccaggacg 1035 Query: 398 tctccatcatagagggcctt 417 || |||||||| |||||||| Sbjct: 1034 tccccatcatacagggcctt 1015 Score = 54.0 bits (27), Expect = 7e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 485 agcaggagcatctgggacccttcatcaggcaccgcagcagaaaggtacttcttgttcttc 544 ||||||| ||||||||| ||||||||||||| ||||||| ||| | ||||| |||||| Sbjct: 947 agcaggaccatctgggaggcttcatcaggcacagcagcagcgaggaatttcttcttcttc 888 Query: 545 accacttcctt 555 || || ||||| Sbjct: 887 acaacctcctt 877
>dbj|AP005931.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0545E05 Length = 163229 Score = 101 bits (51), Expect = 3e-18 Identities = 84/95 (88%) Strand = Plus / Plus Query: 278 tcagattcggcgctctggagccactccacgaccggcttggcgttcttcacgacctgggag 337 ||||| || |||||||||||||||||||||| || ||||| |||||||| |||||||| Sbjct: 26661 tcagaatccgcgctctggagccactccacgaatggtttggcattcttcaccacctgggac 26720 Query: 338 ttcttgccggcagcaacagcttcattgtaccactg 372 | |||||| |||||||||| ||||||||||||||| Sbjct: 26721 tccttgccagcagcaacagattcattgtaccactg 26755
>emb|AL162752.2|NMA1Z2491 Neisseria meningitidis serogroup A strain Z2491 complete genome; segment 1/7 Length = 340806 Score = 44.1 bits (22), Expect = 0.64 Identities = 22/22 (100%) Strand = Plus / Minus Query: 72 gaaaacaaacaggcacaccaaa 93 |||||||||||||||||||||| Sbjct: 11805 gaaaacaaacaggcacaccaaa 11784
>emb|AL645809.8| Mouse DNA sequence from clone RP23-402D13 on chromosome 11 Contains the 5' end of the Tisp78 gene for transcript increased in spermiogenesis 78, the Epn3 gene for epsin 3, the Mycbpap gene for mycbp associated protein, the gene for a novel protein (B430319G23Rik), the 5' end of the gene for a novel protein (9330162N21Rik) and the Chad gene for chondroadherin, complete sequence Length = 106815 Score = 44.1 bits (22), Expect = 0.64 Identities = 22/22 (100%) Strand = Plus / Minus Query: 246 accgcagtacagactctcactc 267 |||||||||||||||||||||| Sbjct: 80780 accgcagtacagactctcactc 80759
>gb|AE002098.2| Neisseria meningitidis MC58, complete genome Length = 2272360 Score = 44.1 bits (22), Expect = 0.64 Identities = 22/22 (100%) Strand = Plus / Plus Query: 72 gaaaacaaacaggcacaccaaa 93 |||||||||||||||||||||| Sbjct: 250135 gaaaacaaacaggcacaccaaa 250156
>gb|AC011737.10| Homo sapiens BAC clone RP11-33N4 from 2, complete sequence Length = 176709 Score = 44.1 bits (22), Expect = 0.64 Identities = 25/26 (96%) Strand = Plus / Minus Query: 670 attgcctaagttggccttgatctctt 695 |||||| ||||||||||||||||||| Sbjct: 160922 attgcccaagttggccttgatctctt 160897
>gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome Length = 2153922 Score = 44.1 bits (22), Expect = 0.64 Identities = 22/22 (100%) Strand = Plus / Minus Query: 72 gaaaacaaacaggcacaccaaa 93 |||||||||||||||||||||| Sbjct: 1708782 gaaaacaaacaggcacaccaaa 1708761
>gb|AC168047.3| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940115D9, complete sequence Length = 108001 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 313 cttggcgttcttcacgacctg 333 ||||||||||||||||||||| Sbjct: 17670 cttggcgttcttcacgacctg 17690
>gb|AE009080.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 106 of 256 of the complete sequence Length = 10277 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 313 cttggcgttcttcacgacctg 333 ||||||||||||||||||||| Sbjct: 1104 cttggcgttcttcacgacctg 1084
>gb|AC127579.4| Mus musculus BAC clone RP23-434O19 from chromosome 14, complete sequence Length = 181361 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 429 gaacttccttcagggcttcag 449 ||||||||||||||||||||| Sbjct: 44298 gaacttccttcagggcttcag 44278
>emb|AL121879.14|HSDJ961O8 Human DNA sequence from clone RP5-961O8 on chromosome Xq23-24, complete sequence Length = 104695 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 80 acaggcacaccaaattcaact 100 ||||||||||||||||||||| Sbjct: 73778 acaggcacaccaaattcaact 73798
>emb|BX248355.1| Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment 2/8 Length = 341553 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 680 ttggccttgatctcttcaacc 700 ||||||||||||||||||||| Sbjct: 214112 ttggccttgatctcttcaacc 214092
>emb|BX572637.17| Zebrafish DNA sequence from clone DKEY-17N16 in linkage group 11, complete sequence Length = 158265 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 62 aagatggcaagaaaacaaaca 82 ||||||||||||||||||||| Sbjct: 62279 aagatggcaagaaaacaaaca 62259
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 313 cttggcgttcttcacgacctg 333 ||||||||||||||||||||| Sbjct: 1160802 cttggcgttcttcacgacctg 1160782
>gb|AY747501.1| Arachis hypogaea isolate PRGAFG08 resistance protein PRG gene, partial cds Length = 366 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 525 aaaggtacttcttgttcttca 545 ||||||||||||||||||||| Sbjct: 290 aaaggtacttcttgttcttca 270
>gb|AC073409.8| Homo sapiens BAC clone RP11-17O9 from 2, complete sequence Length = 180903 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 141 gactcgatggcttaaacaccaggca 165 |||| |||||||||||||||||||| Sbjct: 159777 gactagatggcttaaacaccaggca 159753
>dbj|AB048942.2| Cyprinus carpio CYP1B mRNA for cytochrome P450 1B, complete cds Length = 3400 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 62 aagatggcaagaaaacaaaca 82 ||||||||||||||||||||| Sbjct: 1812 aagatggcaagaaaacaaaca 1832
>gb|AC154858.2| Mus musculus BAC clone RP23-12P20 from 14, complete sequence Length = 180592 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 429 gaacttccttcagggcttcag 449 ||||||||||||||||||||| Sbjct: 39145 gaacttccttcagggcttcag 39165
>emb|CR925820.5| Zebrafish DNA sequence from clone CH211-22E9 in linkage group 10, complete sequence Length = 173023 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 272 tcgtcatcagattcggcgctc 292 ||||||||||||||||||||| Sbjct: 107179 tcgtcatcagattcggcgctc 107159
>dbj|AP001894.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-606E8, complete sequence Length = 151452 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 446 tcagcactgcacttgccacag 466 ||||||||||||||||||||| Sbjct: 46412 tcagcactgcacttgccacag 46432
>emb|BX000430.8| Zebrafish DNA sequence from clone DKEY-9K12, complete sequence Length = 181640 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 62 aagatggcaagaaaacaaaca 82 ||||||||||||||||||||| Sbjct: 151016 aagatggcaagaaaacaaaca 151036
>gb|AC144768.2| Mus musculus BAC clone RP23-24K24 from chromosome 7, complete sequence Length = 230675 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 614 ttgggggcaagggcagagga 633 |||||||||||||||||||| Sbjct: 98072 ttgggggcaagggcagagga 98053
>gb|AY322070.1| Physoplexis comosa internal transcribed spacer 1, partial sequence Length = 275 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 632 gaggatagcacgcccttgag 651 |||||||||||||||||||| Sbjct: 215 gaggatagcacgcccttgag 196
>gb|AC099524.5| Homo sapiens chromosome 16 clone RP11-960L18, complete sequence Length = 184518 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 616 gggggcaagggcagaggagg 635 |||||||||||||||||||| Sbjct: 25308 gggggcaagggcagaggagg 25327
>ref|XM_380500.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG00324.1) partial mRNA Length = 6915 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 tcgtcgtcgtcatcagattc 285 |||||||||||||||||||| Sbjct: 1949 tcgtcgtcgtcatcagattc 1930
>emb|AJ310739.1|AMA310739 Antirrhinum majus afi gene for putative beta-ketoacyl-CoA synthase, exons 1-3 Length = 4306 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 tacgaaaggttgaaagacaa 187 |||||||||||||||||||| Sbjct: 945 tacgaaaggttgaaagacaa 926
>gb|AC127349.3| Mus musculus BAC clone RP23-62M5 from chromosome 13, complete sequence Length = 193255 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 actgacacttatggaaaact 209 |||||||||||||||||||| Sbjct: 9735 actgacacttatggaaaact 9716
>gb|AC125183.4| Mus musculus BAC clone RP23-297M4 from 5, complete sequence Length = 221622 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 aaacaccaggcaaatacgaa 173 |||||||||||||||||||| Sbjct: 120100 aaacaccaggcaaatacgaa 120081
>ref|XM_718602.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY03538) partial mRNA Length = 3459 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 agaaataaccaaaatgactc 145 |||||||||||||||||||| Sbjct: 3025 agaaataaccaaaatgactc 3044
>gb|AC144619.3| Medicago truncatula clone mth2-8n3, complete sequence Length = 46630 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 tgtatccaaacgtagtttga 58 |||||||||||||||||||| Sbjct: 17567 tgtatccaaacgtagtttga 17586
>emb|AL591862.5| Human DNA sequence from clone RP11-287J1 on chromosome 1, complete sequence Length = 19317 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 399 ctccatcatagagggccttc 418 |||||||||||||||||||| Sbjct: 12148 ctccatcatagagggccttc 12129
>emb|AL354714.22| Human DNA sequence from clone RP11-312J18 on chromosome 1 Contains the 3' end of the LY9 gene for lymphocyte antigen 9, the CD244 gene for CD244 natural killer cell receptor 2B4, a peptidylprolyl isomerase A (cyclophilin A) (PPIA) pseudogene, the ITLN1 gene for intelectin 1 (galactofuranose binding), a spermine synthase (SMS) pseudogene, a novel gene, a pseudogene similar to part of DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 (DDX56), the 5' end of a novel gene and the 3' end of ITLN2 gene for intelectin 2, complete sequence Length = 141296 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 477 tagcctggagcaggagcatc 496 |||||||||||||||||||| Sbjct: 34110 tagcctggagcaggagcatc 34091
>emb|AL354775.12| Human DNA sequence from clone RP11-223F20 on chromosome 13 Contains a novel heterogeneous nuclear ribonucleoprotein family A protein and a novel gene, complete sequence Length = 168897 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 cgactgacacttatggaaaa 207 |||||||||||||||||||| Sbjct: 12553 cgactgacacttatggaaaa 12572
>emb|BX323088.13| Zebrafish DNA sequence from clone DKEY-112M2 in linkage group 21, complete sequence Length = 248571 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 ggcaagaaaacaaacaggca 86 |||||||||||||||||||| Sbjct: 178545 ggcaagaaaacaaacaggca 178526
>emb|BX936356.18| Zebrafish DNA sequence from clone DKEY-57P14 in linkage group 21, complete sequence Length = 243377 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 ggcaagaaaacaaacaggca 86 |||||||||||||||||||| Sbjct: 38804 ggcaagaaaacaaacaggca 38823
>gb|AC091044.9| Homo sapiens chromosome 18, clone RP11-694H12, complete sequence Length = 172179 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 487 caggagcatctgggaccctt 506 |||||||||||||||||||| Sbjct: 152030 caggagcatctgggaccctt 152011
>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome Length = 5727534 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 370 ctggacaatggtttcttcct 389 |||||||||||||||||||| Sbjct: 1508628 ctggacaatggtttcttcct 1508647
>gb|AC092705.3| Homo sapiens chromosome 18, clone RP11-886H22, complete sequence Length = 137416 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 487 caggagcatctgggaccctt 506 |||||||||||||||||||| Sbjct: 32099 caggagcatctgggaccctt 32080
>gb|AE002160.2| Chlamydia muridarum Nigg, complete genome Length = 1072950 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 691 ctcttcaaccagttcatcat 710 |||||||||||||||||||| Sbjct: 706164 ctcttcaaccagttcatcat 706183
>dbj|AK077044.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4932436K16 product:hypothetical Aspartic acid-rich region/jmjC domain containing protein, full insert sequence Length = 3590 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 tcgtcgtcgtcatcagattc 285 |||||||||||||||||||| Sbjct: 2671 tcgtcgtcgtcatcagattc 2652
>gb|AC018994.7|AC018994 Homo sapiens chromosome 18, clone RP11-619L19, complete sequence Length = 166451 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 gatacagaaataaccaaaat 140 |||||||||||||||||||| Sbjct: 71982 gatacagaaataaccaaaat 72001
>dbj|AK014800.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4921501E09 product:hypothetical PHD-finger/Aspartic acid-rich region/EGF-like domain/jmjC domain/Zinc finger, C2H2 type containing protein, full insert sequence Length = 3269 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 tcgtcgtcgtcatcagattc 285 |||||||||||||||||||| Sbjct: 2651 tcgtcgtcgtcatcagattc 2632
>gb|AC098966.3| Homo sapiens chromosome 16 clone RP11-465H19, complete sequence Length = 164925 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 616 gggggcaagggcagaggagg 635 |||||||||||||||||||| Sbjct: 80205 gggggcaagggcagaggagg 80224
>gb|AC153151.4| Mus musculus BAC clone RP23-82K6 from chromosome 13, complete sequence Length = 164635 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 617 ggggcaagggcagaggagga 636 |||||||||||||||||||| Sbjct: 72379 ggggcaagggcagaggagga 72360
>gb|AC140397.2| Mus musculus BAC clone RP23-162E7 from chromosome 13, complete sequence Length = 233829 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 617 ggggcaagggcagaggagga 636 |||||||||||||||||||| Sbjct: 14549 ggggcaagggcagaggagga 14568
>emb|BX537257.4| Mouse DNA sequence from clone RP23-89C2 on chromosome 2, complete sequence Length = 79633 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 aagatggcaagaaaacaaac 81 |||||||||||||||||||| Sbjct: 36789 aagatggcaagaaaacaaac 36770
>ref|NM_001009544.1| Mus musculus RIKEN cDNA 4921501E09 gene (4921501E09Rik), mRNA Length = 2727 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 tcgtcgtcgtcatcagattc 285 |||||||||||||||||||| Sbjct: 2471 tcgtcgtcgtcatcagattc 2452
>gb|AC007073.2|AC007073 Homo sapiens chromosome 4 clone C0310G15 map 4p16, complete sequence Length = 193772 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 tggcaagaaaacaaacaggc 85 |||||||||||||||||||| Sbjct: 7549 tggcaagaaaacaaacaggc 7530
>gb|AC109606.11| Mus musculus strain C57BL/6J chromosome 5 clone rp23-113m20, complete sequence Length = 210959 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 666 cagcattgcctaagttggccttga 689 |||||||||||| ||||||||||| Sbjct: 164930 cagcattgcctaggttggccttga 164907
>gb|DQ304585.1| Physoplexis comosa internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence Length = 712 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 632 gaggatagcacgcccttgag 651 |||||||||||||||||||| Sbjct: 215 gaggatagcacgcccttgag 196
>emb|CT033772.6| Mouse DNA sequence from clone RP23-144A16 on chromosome 17, complete sequence Length = 214867 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 tcgtcgtcgtcatcagattc 285 |||||||||||||||||||| Sbjct: 8691 tcgtcgtcgtcatcagattc 8672
>gb|AC151001.2| Mus musculus BAC clone RP23-45M16 from 7, complete sequence Length = 176698 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 614 ttgggggcaagggcagagga 633 |||||||||||||||||||| Sbjct: 139348 ttgggggcaagggcagagga 139367
>gb|AC140844.3| Mus musculus BAC clone RP24-361P18 from 13, complete sequence Length = 132297 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 actgacacttatggaaaact 209 |||||||||||||||||||| Sbjct: 50887 actgacacttatggaaaact 50868
>gb|AC118226.7| Mus musculus chromosome 5, clone RP23-372N19, complete sequence Length = 173599 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 435 ccttcagggcttcagcactg 454 |||||||||||||||||||| Sbjct: 31160 ccttcagggcttcagcactg 31179
>gb|AC170086.2| Mus musculus BAC clone RP24-127E11 from chromosome 13, complete sequence Length = 167543 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 actgacacttatggaaaact 209 |||||||||||||||||||| Sbjct: 156298 actgacacttatggaaaact 156279 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,145,642 Number of Sequences: 3902068 Number of extensions: 6145642 Number of successful extensions: 134149 Number of sequences better than 10.0: 68 Number of HSP's better than 10.0 without gapping: 68 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 133856 Number of HSP's gapped (non-prelim): 286 length of query: 725 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 702 effective length of database: 17,143,297,704 effective search space: 12034594988208 effective search space used: 12034594988208 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)