ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags6e14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_472578.1| Oryza sativa (japonica cultivar-group), predic... 194 2e-46
2dbj|AK100857.1| Oryza sativa (japonica cultivar-group) cDNA clon... 194 2e-46
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 96 1e-16
4emb|AL606592.2|OSJN00024 Oryza sativa genomic DNA, chromosome 4,... 96 1e-16
5gb|AY108662.1| Zea mays PCO146921 mRNA sequence 86 1e-13
6ref|XM_506822.1| PREDICTED Oryza sativa (japonica cultivar-group... 60 8e-06
7ref|XM_466189.1| Oryza sativa (japonica cultivar-group), mRNA 60 8e-06
8dbj|AK069920.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 8e-06
9dbj|AK060250.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 8e-06
10dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
11dbj|AP004876.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
12dbj|AK047665.1| Mus musculus adult male corpus striatum cDNA, RI... 46 0.12
13emb|BX547929.3| Mouse DNA sequence from clone RP24-186K6 on chro... 46 0.12
14gb|BC098215.1| Mus musculus elongation of very long chain fatty ... 44 0.49
15gb|AC158538.2| Mus musculus BAC clone RP23-2H11 from chromosome ... 44 0.49
16dbj|AK044770.1| Mus musculus adult retina cDNA, RIKEN full-lengt... 44 0.49
17dbj|AK014803.1| Mus musculus adult male testis cDNA, RIKEN full-... 44 0.49
18dbj|AK029855.1| Mus musculus adult male testis cDNA, RIKEN full-... 44 0.49
19ref|NM_019423.1| Mus musculus elongation of very long chain fatt... 44 0.49
20gb|AF170908.1|AF170908 Mus musculus SSC2 (Ssc2) mRNA, complete cds 44 0.49
21dbj|AP003481.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 44 0.49
22dbj|AP003462.2| Homo sapiens genomic DNA, chromosome 11q clone:R... 44 0.49
23gb|AC102806.18| Mus musculus chromosome 3, clone RP23-341B15, co... 42 1.9
24gb|AC158932.5| Mus musculus chromosome 3, clone RP24-338G13, com... 42 1.9
25gb|AC163625.5| Mus musculus BAC clone RP23-135K11 from chromosom... 42 1.9
26gb|AC110591.7| Homo sapiens chromosome 18, clone CTD-2504O24, co... 42 1.9
27gb|AC116002.5| Homo sapiens chromosome 18, clone RP11-182L8, com... 42 1.9
28gb|AC110027.5| Homo sapiens chromosome 15, clone RP11-452K20, co... 42 1.9
29gb|AC080032.12| Homo sapiens chromosome 15, clone RP11-349O9, co... 42 1.9
30emb|AL954390.19| Mouse DNA sequence from clone RP23-13H18 on chr... 42 1.9
31emb|AL928707.5| Zebrafish DNA sequence from clone CH211-207M2 in... 42 1.9
32gb|AC138204.7| Mus musculus chromosome 3, clone RP23-381G8, comp... 40 7.6
33gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 7.6
34gb|AC123735.6| Mus musculus chromosome 15, clone RP23-478A10, co... 40 7.6
35gb|AC000057.1| Homo sapiens BAC clone CTB-67M9 from 7, complete ... 40 7.6
36gb|AC123640.9| Mus musculus chromosome 15, clone RP23-11D17, com... 40 7.6
37gb|AC124709.3| Mus musculus BAC clone RP24-83P8 from chromosome ... 40 7.6
38ref|XM_790826.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 7.6
39emb|AL392043.21| Human DNA sequence from clone RP11-288G11 on ch... 40 7.6
40emb|AL136963.17| Human DNA sequence from clone RP11-300N13 on ch... 40 7.6
41ref|XM_794073.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 7.6
42gb|AC154487.2| Mus musculus BAC clone RP24-119I4 from chromosome... 40 7.6
43gb|AC100183.11| Mus musculus chromosome 3, clone RP23-54L16, com... 40 7.6
44gb|AC018622.10| Homo sapiens chromosome 8, clone RP11-346M13, co... 40 7.6
45gb|AC099512.2| Homo sapiens chromosome 5 clone RP11-351K10, comp... 40 7.6
46gb|AC097662.5| Homo sapiens BAC clone RP11-563C6 from 2, complet... 40 7.6 
>ref|XM_472578.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1362

 Score =  194 bits (98), Expect = 2e-46
 Identities = 251/302 (83%)
 Strand = Plus / Minus

                                                                        
Query: 258  cgcattctctttacatcattctcgggcacactcgcatccgcaccattgccacgcgcggtg 317
            ||||| ||||||||||| ||||| || ||| | || ||||| || ||||| || || |||
Sbjct: 1349 cgcatcctctttacatcgttctctggtacatttgcgtccgccccgttgcctcgtgccgtg 1290

                                                                        
Query: 318  gcatcacctggttttgcaaccttctcatcaggaacaagagcatatctttcagagggtgac 377
             | |||||||  |||| ||| || |||||||||||||  ||||||||||| || || || 
Sbjct: 1289 ccttcacctgaatttggaactttttcatcaggaacaatggcatatctttctgatggcgag 1230

                                                                        
Query: 378  acccaaattttagctgcaaatggaatagctgctgaagactccagcttcttgcaaccagga 437
            ||||| | ||| ||||||||||| | ||||| ||| | ||| |  |||||||| ||||||
Sbjct: 1229 acccagactttggctgcaaatggtacagctgttgatggctctaatttcttgcagccagga 1170

                                                                        
Query: 438  ccgtctgggcttagggcatcaataatcacaggtgtgttcctgtcaactatttccccatga 497
            || || ||||||| ||||||||| ||||||||| ||||||||||||||||||| ||||||
Sbjct: 1169 ccatccgggcttaaggcatcaatcatcacaggtttgttcctgtcaactatttcaccatga 1110

                                                                        
Query: 498  ccgagttgtccactagtaccccttccccatgcaaacacatttttcttttctgtgaaagca 557
            || |||||||| ||||||||||| |||||||  || ||||||||||||||||| || |||
Sbjct: 1109 ccaagttgtccgctagtacccctcccccatgagaaaacatttttcttttctgtaaatgca 1050

              
Query: 558  ag 559
            ||
Sbjct: 1049 ag 1048
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>dbj|AK100857.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023123M01, full
            insert sequence
          Length = 2021

 Score =  194 bits (98), Expect = 2e-46
 Identities = 251/302 (83%)
 Strand = Plus / Minus

                                                                        
Query: 258  cgcattctctttacatcattctcgggcacactcgcatccgcaccattgccacgcgcggtg 317
            ||||| ||||||||||| ||||| || ||| | || ||||| || ||||| || || |||
Sbjct: 1692 cgcatcctctttacatcgttctctggtacatttgcgtccgccccgttgcctcgtgccgtg 1633

                                                                        
Query: 318  gcatcacctggttttgcaaccttctcatcaggaacaagagcatatctttcagagggtgac 377
             | |||||||  |||| ||| || |||||||||||||  ||||||||||| || || || 
Sbjct: 1632 ccttcacctgaatttggaactttttcatcaggaacaatggcatatctttctgatggcgag 1573

                                                                        
Query: 378  acccaaattttagctgcaaatggaatagctgctgaagactccagcttcttgcaaccagga 437
            ||||| | ||| ||||||||||| | ||||| ||| | ||| |  |||||||| ||||||
Sbjct: 1572 acccagactttggctgcaaatggtacagctgttgatggctctaatttcttgcagccagga 1513

                                                                        
Query: 438  ccgtctgggcttagggcatcaataatcacaggtgtgttcctgtcaactatttccccatga 497
            || || ||||||| ||||||||| ||||||||| ||||||||||||||||||| ||||||
Sbjct: 1512 ccatccgggcttaaggcatcaatcatcacaggtttgttcctgtcaactatttcaccatga 1453

                                                                        
Query: 498  ccgagttgtccactagtaccccttccccatgcaaacacatttttcttttctgtgaaagca 557
            || |||||||| ||||||||||| |||||||  || ||||||||||||||||| || |||
Sbjct: 1452 ccaagttgtccgctagtacccctcccccatgagaaaacatttttcttttctgtaaatgca 1393

              
Query: 558  ag 559
            ||
Sbjct: 1392 ag 1391



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                             
Query: 123  actttggcagaacggaatgcacaaaaactggacaccactagatggaaac 171
            |||| ||||||| || |||||||||||  ||||| |||| |||||||||
Sbjct: 1827 acttgggcagaatgggatgcacaaaaatgggacagcactggatggaaac 1779
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 75/84 (89%)
 Strand = Plus / Minus

                                                                            
Query: 476      cctgtcaactatttccccatgaccgagttgtccactagtaccccttccccatgcaaacac 535
                ||||||||||||||| |||||||| |||||||| ||||||||||| |||||||  || ||
Sbjct: 21695592 cctgtcaactatttcaccatgaccaagttgtccgctagtacccctcccccatgagaaaac 21695533

                                        
Query: 536      atttttcttttctgtgaaagcaag 559
                ||||||||||||||| || |||||
Sbjct: 21695532 atttttcttttctgtaaatgcaag 21695509



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                                 
Query: 123      actttggcagaacggaatgcacaaaaactggacaccactagatggaaac 171
                |||| ||||||| || |||||||||||  ||||| |||| |||||||||
Sbjct: 21696272 acttgggcagaatgggatgcacaaaaatgggacagcactggatggaaac 21696224
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>emb|AL606592.2|OSJN00024 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0006B20,
            complete sequence
          Length = 141915

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 75/84 (89%)
 Strand = Plus / Minus

                                                                        
Query: 476  cctgtcaactatttccccatgaccgagttgtccactagtaccccttccccatgcaaacac 535
            ||||||||||||||| |||||||| |||||||| ||||||||||| |||||||  || ||
Sbjct: 7209 cctgtcaactatttcaccatgaccaagttgtccgctagtacccctcccccatgagaaaac 7150

                                    
Query: 536  atttttcttttctgtgaaagcaag 559
            ||||||||||||||| || |||||
Sbjct: 7149 atttttcttttctgtaaatgcaag 7126



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                             
Query: 123  actttggcagaacggaatgcacaaaaactggacaccactagatggaaac 171
            |||| ||||||| || |||||||||||  ||||| |||| |||||||||
Sbjct: 7889 acttgggcagaatgggatgcacaaaaatgggacagcactggatggaaac 7841
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>gb|AY108662.1| Zea mays PCO146921 mRNA sequence
          Length = 2037

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 109/131 (83%)
 Strand = Plus / Minus

                                                                        
Query: 414  gactccagcttcttgcaaccaggaccgtctgggcttagggcatcaataatcacaggtgtg 473
            |||||||||||||||||  ||| |||||||| ||| |||||||| || | |||||| |||
Sbjct: 1505 gactccagcttcttgcaggcagaaccgtctgagctcagggcatcgatcagcacaggcgtg 1446

                                                                        
Query: 474  ttcctgtcaactatttccccatgaccgagttgtccactagtaccccttccccatgcaaac 533
            |||||||| |||||||| || |  ||||| ||||| ||||| ||||| ||||| |  || 
Sbjct: 1445 ttcctgtcgactatttcaccgttgccgagctgtccgctagtgcccctcccccaggagaag 1386

                       
Query: 534  acatttttctt 544
            |||||||||||
Sbjct: 1385 acatttttctt 1375
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>ref|XM_506822.1| PREDICTED Oryza sativa (japonica cultivar-group), P0470G10.15 mRNA
          Length = 1691

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 60/70 (85%)
 Strand = Plus / Minus

                                                                        
Query: 472  tgttcctgtcaactatttccccatgaccgagttgtccactagtaccccttccccatgcaa 531
            ||||||| ||||||||||| ||||| || || |||||||| || |||||||||||||  |
Sbjct: 1184 tgttcctatcaactatttcaccatggccaagctgtccactggtgccccttccccatgaga 1125

                      
Query: 532  acacattttt 541
            | ||||||||
Sbjct: 1124 aaacattttt 1115
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>ref|XM_466189.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1675

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 60/70 (85%)
 Strand = Plus / Minus

                                                                        
Query: 472  tgttcctgtcaactatttccccatgaccgagttgtccactagtaccccttccccatgcaa 531
            ||||||| ||||||||||| ||||| || || |||||||| || |||||||||||||  |
Sbjct: 1185 tgttcctatcaactatttcaccatggccaagctgtccactggtgccccttccccatgaga 1126

                      
Query: 532  acacattttt 541
            | ||||||||
Sbjct: 1125 aaacattttt 1116
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>dbj|AK069920.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023039G23, full
            insert sequence
          Length = 1675

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 60/70 (85%)
 Strand = Plus / Minus

                                                                        
Query: 472  tgttcctgtcaactatttccccatgaccgagttgtccactagtaccccttccccatgcaa 531
            ||||||| ||||||||||| ||||| || || |||||||| || |||||||||||||  |
Sbjct: 1185 tgttcctatcaactatttcaccatggccaagctgtccactggtgccccttccccatgaga 1126

                      
Query: 532  acacattttt 541
            | ||||||||
Sbjct: 1125 aaacattttt 1116
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>dbj|AK060250.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-004-B02, full
            insert sequence
          Length = 1691

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 60/70 (85%)
 Strand = Plus / Minus

                                                                        
Query: 472  tgttcctgtcaactatttccccatgaccgagttgtccactagtaccccttccccatgcaa 531
            ||||||| ||||||||||| ||||| || || |||||||| || |||||||||||||  |
Sbjct: 1184 tgttcctatcaactatttcaccatggccaagctgtccactggtgccccttccccatgaga 1125

                      
Query: 532  acacattttt 541
            | ||||||||
Sbjct: 1124 aaacattttt 1115
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                            
Query: 480      tcaactatttccccatgaccgagttgtccactagtaccccttccccatgcaaacacattt 539
                ||||||||||| ||||| || || |||||||| || |||||||||||||  || ||||||
Sbjct: 20937437 tcaactatttcaccatggccaagctgtccactggtgccccttccccatgagaaaacattt 20937378

                  
Query: 540      tt 541
                ||
Sbjct: 20937377 tt 20937376
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>dbj|AP004876.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0470G10
          Length = 145419

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                         
Query: 480   tcaactatttccccatgaccgagttgtccactagtaccccttccccatgcaaacacattt 539
             ||||||||||| ||||| || || |||||||| || |||||||||||||  || ||||||
Sbjct: 60909 tcaactatttcaccatggccaagctgtccactggtgccccttccccatgagaaaacattt 60850

               
Query: 540   tt 541
             ||
Sbjct: 60849 tt 60848
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>dbj|AK047665.1| Mus musculus adult male corpus striatum cDNA, RIKEN full-length
            enriched library, clone:C030005P03
            product:unclassifiable, full insert sequence
          Length = 2155

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 528  gcaaacacatttttcttttctgt 550
            |||||||||||||||||||||||
Sbjct: 1560 gcaaacacatttttcttttctgt 1582
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>emb|BX547929.3| Mouse DNA sequence from clone RP24-186K6 on chromosome X, complete
            sequence
          Length = 26235

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 528  gcaaacacatttttcttttctgt 550
            |||||||||||||||||||||||
Sbjct: 6138 gcaaacacatttttcttttctgt 6160
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>gb|BC098215.1| Mus musculus elongation of very long chain fatty acids (FEN1/Elo2,
            SUR4/Elo3, yeast)-like 2, mRNA (cDNA clone MGC:106664
            IMAGE:30617894), complete cds
          Length = 3727

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 528  gcaaacacatttttcttttctg 549
            ||||||||||||||||||||||
Sbjct: 1655 gcaaacacatttttcttttctg 1634
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>gb|AC158538.2| Mus musculus BAC clone RP23-2H11 from chromosome 13, complete sequence
          Length = 237313

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 528   gcaaacacatttttcttttctg 549
             ||||||||||||||||||||||
Sbjct: 46238 gcaaacacatttttcttttctg 46217
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>dbj|AK044770.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library,
            clone:A930041F19 product:elongation of very long chain
            fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2, full
            insert sequence
          Length = 3720

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 528  gcaaacacatttttcttttctg 549
            ||||||||||||||||||||||
Sbjct: 1672 gcaaacacatttttcttttctg 1651
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>dbj|AK014803.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
            library, clone:4921503C17 product:elongation of very long
            chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2,
            full insert sequence
          Length = 3800

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 528  gcaaacacatttttcttttctg 549
            ||||||||||||||||||||||
Sbjct: 1751 gcaaacacatttttcttttctg 1730
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>dbj|AK029855.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
            library, clone:4931413E19 product:elongation of very long
            chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2,
            full insert sequence
          Length = 3700

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 528  gcaaacacatttttcttttctg 549
            ||||||||||||||||||||||
Sbjct: 1653 gcaaacacatttttcttttctg 1632
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>ref|NM_019423.1| Mus musculus elongation of very long chain fatty acids (FEN1/Elo2,
            SUR4/Elo3, yeast)-like 2 (Elovl2), mRNA
          Length = 3708

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 528  gcaaacacatttttcttttctg 549
            ||||||||||||||||||||||
Sbjct: 1662 gcaaacacatttttcttttctg 1641
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>gb|AF170908.1|AF170908 Mus musculus SSC2 (Ssc2) mRNA, complete cds
          Length = 3708

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 528  gcaaacacatttttcttttctg 549
            ||||||||||||||||||||||
Sbjct: 1662 gcaaacacatttttcttttctg 1641
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>dbj|AP003481.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-11E12, complete
              sequence
          Length = 138317

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 534    acatttttcttttctgtgaaag 555
              ||||||||||||||||||||||
Sbjct: 137812 acatttttcttttctgtgaaag 137833
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>dbj|AP003462.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-480C22, complete
             sequences
          Length = 190032

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 534   acatttttcttttctgtgaaag 555
             ||||||||||||||||||||||
Sbjct: 37427 acatttttcttttctgtgaaag 37448
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>gb|AC102806.18| Mus musculus chromosome 3, clone RP23-341B15, complete sequence
          Length = 229984

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 528   gcaaacacatttttcttttct 548
             |||||||||||||||||||||
Sbjct: 11169 gcaaacacatttttcttttct 11149
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>gb|AC158932.5| Mus musculus chromosome 3, clone RP24-338G13, complete sequence
          Length = 159429

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 528    gcaaacacatttttcttttct 548
              |||||||||||||||||||||
Sbjct: 156627 gcaaacacatttttcttttct 156607
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>gb|AC163625.5| Mus musculus BAC clone RP23-135K11 from chromosome 8, complete sequence
          Length = 228750

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 526   atgcaaacacatttttctttt 546
             |||||||||||||||||||||
Sbjct: 79734 atgcaaacacatttttctttt 79714
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>gb|AC110591.7| Homo sapiens chromosome 18, clone CTD-2504O24, complete sequence
          Length = 147651

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 379    cccaaattttagctgcaaatggaatagct 407
              |||||||||||||||| |||||| |||||
Sbjct: 114804 cccaaattttagctgccaatggattagct 114832
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>gb|AC116002.5| Homo sapiens chromosome 18, clone RP11-182L8, complete sequence
          Length = 173233

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 379   cccaaattttagctgcaaatggaatagct 407
             |||||||||||||||| |||||| |||||
Sbjct: 41307 cccaaattttagctgccaatggattagct 41335
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>gb|AC110027.5| Homo sapiens chromosome 15, clone RP11-452K20, complete sequence
          Length = 177770

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 530   aaacacatttttcttttctgt 550
             |||||||||||||||||||||
Sbjct: 77231 aaacacatttttcttttctgt 77251
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>gb|AC080032.12| Homo sapiens chromosome 15, clone RP11-349O9, complete sequence
          Length = 181413

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 530    aaacacatttttcttttctgt 550
              |||||||||||||||||||||
Sbjct: 174332 aaacacatttttcttttctgt 174312
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>emb|AL954390.19| Mouse DNA sequence from clone RP23-13H18 on chromosome 4, complete
              sequence
          Length = 185237

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 535    catttttcttttctgtgaaag 555
              |||||||||||||||||||||
Sbjct: 115849 catttttcttttctgtgaaag 115829
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>emb|AL928707.5| Zebrafish DNA sequence from clone CH211-207M2 in linkage group 21,
             complete sequence
          Length = 206304

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 538   ttttcttttctgtgaaagcaa 558
             |||||||||||||||||||||
Sbjct: 26484 ttttcttttctgtgaaagcaa 26464
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>gb|AC138204.7| Mus musculus chromosome 3, clone RP23-381G8, complete sequence
          Length = 173792

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 534   acatttttcttttctgtgaa 553
             ||||||||||||||||||||
Sbjct: 87712 acatttttcttttctgtgaa 87731
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>gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 4, complete
            sequence
          Length = 1783081

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 535  catttttcttttctgtgaaa 554
            ||||||||||||||||||||
Sbjct: 6405 catttttcttttctgtgaaa 6386
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>gb|AC123735.6| Mus musculus chromosome 15, clone RP23-478A10, complete sequence
          Length = 171298

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 534    acatttttcttttctgtgaa 553
              ||||||||||||||||||||
Sbjct: 144964 acatttttcttttctgtgaa 144945
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>gb|AC000057.1| Homo sapiens BAC clone CTB-67M9 from 7, complete sequence
          Length = 78631

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 106   ttcctctcctggaaagtactttgg 129
             ||||||||||||||||| ||||||
Sbjct: 58058 ttcctctcctggaaagtgctttgg 58081
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>gb|AC123640.9| Mus musculus chromosome 15, clone RP23-11D17, complete sequence
          Length = 219106

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 534    acatttttcttttctgtgaa 553
              ||||||||||||||||||||
Sbjct: 148605 acatttttcttttctgtgaa 148624
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>gb|AC124709.3| Mus musculus BAC clone RP24-83P8 from chromosome 14, complete sequence
          Length = 195961

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 388   tagctgcaaatggaatagct 407
             ||||||||||||||||||||
Sbjct: 48783 tagctgcaaatggaatagct 48802
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>ref|XM_790826.1| PREDICTED: Strongylocentrotus purpuratus similar to CG6004-PB
           (LOC591255), partial mRNA
          Length = 1773

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 162 agatggaaactgatgaacaa 181
           ||||||||||||||||||||
Sbjct: 773 agatggaaactgatgaacaa 792
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>emb|AL392043.21| Human DNA sequence from clone RP11-288G11 on chromosome 10 Contains the
              3' end of the INPP5A gene for inositol
              polyphosphate-5-phosphatase 40kDa, a novel gene, the NKX6-2
              gene for NK6 transcription factor related locus 2, a novel
              gene (DKFZp434A1721), the 3' end of a novel gene and ten
              CpG islands, complete sequence
          Length = 208064

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 527    tgcaaacacatttttctttt 546
              ||||||||||||||||||||
Sbjct: 197539 tgcaaacacatttttctttt 197520
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>emb|AL136963.17| Human DNA sequence from clone RP11-300N13 on chromosome 13q12.11-12.3,
             complete sequence
          Length = 29388

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 530   aaacacatttttcttttctg 549
             ||||||||||||||||||||
Sbjct: 18020 aaacacatttttcttttctg 18001
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>ref|XM_794073.1| PREDICTED: Strongylocentrotus purpuratus similar to dentin
           sialophosphoprotein preproprotein (LOC594638), mRNA
          Length = 13980

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 162 agatggaaactgatgaacaa 181
           ||||||||||||||||||||
Sbjct: 911 agatggaaactgatgaacaa 930
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>gb|AC154487.2| Mus musculus BAC clone RP24-119I4 from chromosome 14, complete sequence
          Length = 199036

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 533   cacatttttcttttctgtga 552
             ||||||||||||||||||||
Sbjct: 45566 cacatttttcttttctgtga 45547
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>gb|AC100183.11| Mus musculus chromosome 3, clone RP23-54L16, complete sequence
          Length = 231917

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 534    acatttttcttttctgtgaa 553
              ||||||||||||||||||||
Sbjct: 150583 acatttttcttttctgtgaa 150564
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>gb|AC018622.10| Homo sapiens chromosome 8, clone RP11-346M13, complete sequence
          Length = 187574

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 536   atttttcttttctgtgaaag 555
             ||||||||||||||||||||
Sbjct: 77079 atttttcttttctgtgaaag 77098
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>gb|AC099512.2| Homo sapiens chromosome 5 clone RP11-351K10, complete sequence
          Length = 161775

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 536   atttttcttttctgtgaaag 555
             ||||||||||||||||||||
Sbjct: 92180 atttttcttttctgtgaaag 92199
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>gb|AC097662.5| Homo sapiens BAC clone RP11-563C6 from 2, complete sequence
          Length = 206624

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 527   tgcaaacacatttttctttt 546
             ||||||||||||||||||||
Sbjct: 14241 tgcaaacacatttttctttt 14222


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,255,560
Number of Sequences: 3902068
Number of extensions: 5255560
Number of successful extensions: 99356
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 99208
Number of HSP's gapped (non-prelim): 148
length of query: 559
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 536
effective length of database: 17,143,297,704
effective search space: 9188807569344
effective search space used: 9188807569344
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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