>VP13B_HUMAN (Q7Z7G8) Vacuolar protein sorting 13B (Cohen syndrome protein 1)|
          Length = 4022

 Score = 32.3 bits (72), Expect = 0.28
 Identities = 20/56 (35%), Positives = 29/56 (51%)
 Frame = +3

Query: 99   GVIQKMDTQQF*NVDTDHTTPANCHKAPWCRLSLGCISCILPPASPRPSSFLRIHH 266
            GV +++  QQ+ N   D+ T  +CH AP C  S   I C +  A P PS+    H+
Sbjct: 3943 GVRERLSEQQY-NRLVDYITKTSCHLAPSC--SSMQIPCPVVAAEPPPSTVKTYHY 3995

>VL2_HPV69 (Q9JH45) Minor capsid protein L2|
          Length = 467

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = +2

Query: 203 LHKLYITTSFSTTFKLPQNSPPAKMKFSTAL*ELTTYMQHNATVHLLSGFGTPFY 367
           L  +Y     + TF  P  +P    +FS+ +   T+    N T+ L + F  P Y
Sbjct: 350 LFDVYADADPAPTFTFPSTTPTTIPRFSSTIFSTTSSAPLNVTIPLSTSFDIPIY 404

>SAYP_DROME (Q9VWF2) Supporter of activation of yellow protein (Protein|
           enhancer of yellow 3)
          Length = 2006

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +3

Query: 75  VHKVDNSHGVIQKMDTQQF*NVDTDHTTPANCHKAPWCRL 194
           +HK+   HGV Q+MDTQ   N +    T +  +++P  RL
Sbjct: 730 IHKLAMDHGVEQRMDTQDNNNENHLKRTNSEGNESPSSRL 769

>ATRIP_DROME (Q9VVN4) ATR-interacting protein mus304 (Mutagen-sensivite protein|
           304)
          Length = 846

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 8/45 (17%)
 Frame = -1

Query: 194 KPTPWSFVTVSRCCMICI---DILELLCVH-----LLYDTMRVIY 84
           +P+PW F  +S C + C+    +++ +CV+      + D +R +Y
Sbjct: 518 RPSPWVFAELSSCFLSCLRHPQLMDKMCVNSPKDCFVSDRVRSVY 562

>POLG_HCVH (P27958) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/NT
          Length = 3010

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 337  PTVRFRYSFLLGMHEHPCGSSL 402
            P +R   SF +G+HE+P GS L
Sbjct: 2138 PLLREEVSFRVGLHEYPVGSQL 2159

>POLG_HCV1 (P26664) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/NT
          Length = 3010

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 337  PTVRFRYSFLLGMHEHPCGSSL 402
            P +R   SF +G+HE+P GS L
Sbjct: 2138 PLLREEVSFRVGLHEYPVGSQL 2159


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,692,972
Number of Sequences: 219361
Number of extensions: 1134091
Number of successful extensions: 2536
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2536
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)