| Clone Name | rbags5p06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT018700.1| Zea mays clone EL01N0515A01.d mRNA sequence Length = 1400 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Minus Query: 367 cttggaatgcatgaacatccttgcggaagttctctagt 404 ||||||||| ||| | |||||||||||||||||||||| Sbjct: 912 cttggaatgaatggatatccttgcggaagttctctagt 875
>gb|AY111004.1| Zea mays CL15165_1 mRNA sequence Length = 722 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Plus Query: 367 cttggaatgcatgaacatccttgcggaagttctctagt 404 ||||||||| ||| | |||||||||||||||||||||| Sbjct: 651 cttggaatgaatggatatccttgcggaagttctctagt 688
>gb|AC123520.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0034O04, complete sequence Length = 164882 Score = 46.1 bits (23), Expect = 0.088 Identities = 29/31 (93%) Strand = Plus / Plus Query: 370 ggaatgcatgaacatccttgcggaagttctc 400 |||||| ||||||| |||||||||||||||| Sbjct: 54610 ggaatgaatgaacacccttgcggaagttctc 54640
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 46.1 bits (23), Expect = 0.088 Identities = 29/31 (93%) Strand = Plus / Plus Query: 370 ggaatgcatgaacatccttgcggaagttctc 400 |||||| ||||||| |||||||||||||||| Sbjct: 5844726 ggaatgaatgaacacccttgcggaagttctc 5844756
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 46.1 bits (23), Expect = 0.088 Identities = 29/31 (93%) Strand = Plus / Plus Query: 370 ggaatgcatgaacatccttgcggaagttctc 400 |||||| ||||||| |||||||||||||||| Sbjct: 5911203 ggaatgaatgaacacccttgcggaagttctc 5911233
>emb|AL161584.2|ATCHRIV80 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 80 Length = 192861 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 294 tgtaagaactaactacatatat 315 |||||||||||||||||||||| Sbjct: 49553 tgtaagaactaactacatatat 49574
>emb|AL031394.1|ATT16L1 Arabidopsis thaliana DNA chromosome 4, BAC clone T16L1 (ESSAII project) Length = 98124 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 294 tgtaagaactaactacatatat 315 |||||||||||||||||||||| Sbjct: 96770 tgtaagaactaactacatatat 96791
>emb|AL031032.1|ATF17I5 Arabidopsis thaliana DNA chromosome 4, BAC clone F17I5 (ESSA project) Length = 86748 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 294 tgtaagaactaactacatatat 315 |||||||||||||||||||||| Sbjct: 529 tgtaagaactaactacatatat 550
>emb|AL929017.9| Zebrafish DNA sequence from clone DKEY-4C15 in linkage group 20, complete sequence Length = 208922 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 97 atggtgtcatacaaaagatgga 118 |||||||||||||||||||||| Sbjct: 77775 atggtgtcatacaaaagatgga 77754
>gb|AC110525.10| Mus musculus chromosome 8, clone RP23-82N11, complete sequence Length = 153281 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 ctgctatcttaagactcagg 42 |||||||||||||||||||| Sbjct: 76227 ctgctatcttaagactcagg 76208
>gb|AC147684.4| Pan troglodytes BAC clone CH251-497P9 from Y, complete sequence Length = 230902 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 ctcagggaaaacaagttgag 56 |||||||||||||||||||| Sbjct: 126657 ctcagggaaaacaagttgag 126676
>gb|AC147686.2| Pan troglodytes BAC clone CH251-285E7 from Y, complete sequence Length = 176158 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 ctcagggaaaacaagttgag 56 |||||||||||||||||||| Sbjct: 173991 ctcagggaaaacaagttgag 174010
>gb|AC147657.2| Pan troglodytes BAC clone CH251-433L14 from Y, complete sequence Length = 173252 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 ctcagggaaaacaagttgag 56 |||||||||||||||||||| Sbjct: 96444 ctcagggaaaacaagttgag 96463
>gb|AC147654.3| Pan troglodytes BAC clone CH251-511H17 from Y, complete sequence Length = 241654 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 ctcagggaaaacaagttgag 56 |||||||||||||||||||| Sbjct: 136884 ctcagggaaaacaagttgag 136903
>gb|AC144378.2| Pan troglodytes BAC clone RP43-20D17 from Y, complete sequence Length = 194240 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 ctcagggaaaacaagttgag 56 |||||||||||||||||||| Sbjct: 108077 ctcagggaaaacaagttgag 108058
>gb|AC145782.1| Pan troglodytes BAC clone CH251-481A23 from Y, complete sequence Length = 184214 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 ctcagggaaaacaagttgag 56 |||||||||||||||||||| Sbjct: 174137 ctcagggaaaacaagttgag 174118
>gb|AC158790.5| Mus musculus chromosome 1, clone RP23-223M9, complete sequence Length = 178205 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 33 aagactcagggaaaacaagttgag 56 |||||||||||||||| ||||||| Sbjct: 168311 aagactcagggaaaaccagttgag 168288
>gb|AC158350.7| Mus musculus chromosome 8, clone RP24-250A3, complete sequence Length = 174965 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 ctgctatcttaagactcagg 42 |||||||||||||||||||| Sbjct: 171828 ctgctatcttaagactcagg 171809
>emb|AL672240.13| Mouse DNA sequence from clone RP23-27I16 on chromosome 11, complete sequence Length = 224603 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 103 tcatacaaaagatggacaca 122 |||||||||||||||||||| Sbjct: 199491 tcatacaaaagatggacaca 199472
>gb|AC158928.6| Mus musculus chromosome 1, clone RP23-228O9, complete sequence Length = 179146 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 33 aagactcagggaaaacaagttgag 56 |||||||||||||||| ||||||| Sbjct: 162119 aagactcagggaaaaccagttgag 162142
>gb|AC103619.12| Mus musculus chromosome 1, clone RP24-217I23, complete sequence Length = 152116 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 33 aagactcagggaaaacaagttgag 56 |||||||||||||||| ||||||| Sbjct: 40632 aagactcagggaaaaccagttgag 40609
>dbj|BS000673.1| Pan troglodytes chromosome Y clone:PTB-403A06, complete sequence Length = 132888 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 ctcagggaaaacaagttgag 56 |||||||||||||||||||| Sbjct: 32321 ctcagggaaaacaagttgag 32302
>dbj|BS000672.1| Pan troglodytes chromosome Y clone:PTB-410J23, complete sequence Length = 179523 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 ctcagggaaaacaagttgag 56 |||||||||||||||||||| Sbjct: 168602 ctcagggaaaacaagttgag 168583
>dbj|BS000602.1| Pan troglodytes chromosome Y clone:PTB-547B05, complete sequences Length = 211728 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 ctcagggaaaacaagttgag 56 |||||||||||||||||||| Sbjct: 107223 ctcagggaaaacaagttgag 107204
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 ctcagggaaaacaagttgag 56 |||||||||||||||||||| Sbjct: 14240359 ctcagggaaaacaagttgag 14240340 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 ctcagggaaaacaagttgag 56 |||||||||||||||||||| Sbjct: 13416255 ctcagggaaaacaagttgag 13416236 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 ctcagggaaaacaagttgag 56 |||||||||||||||||||| Sbjct: 9016030 ctcagggaaaacaagttgag 9016011 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 ctcagggaaaacaagttgag 56 |||||||||||||||||||| Sbjct: 4454922 ctcagggaaaacaagttgag 4454903 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 ctcagggaaaacaagttgag 56 |||||||||||||||||||| Sbjct: 799130 ctcagggaaaacaagttgag 799111
>gb|AC013558.10| Homo sapiens chromosome 18, clone RP11-41O4, complete sequence Length = 133557 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 45 aaacaagttgagactattgagatc 68 |||||| ||||||||||||||||| Sbjct: 35079 aaacaaattgagactattgagatc 35102
>gb|AC147674.5| Pan troglodytes BAC clone CH251-28I8 from chromosome y, complete sequence Length = 193266 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 ctcagggaaaacaagttgag 56 |||||||||||||||||||| Sbjct: 8117 ctcagggaaaacaagttgag 8136
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 75 gtccataaagtagataactctcat 98 |||||||||||||| ||||||||| Sbjct: 16978866 gtccataaagtagacaactctcat 16978889
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 ctccatggtgtcggctttct 197 |||||||||||||||||||| Sbjct: 5591403 ctccatggtgtcggctttct 5591422
>gb|AC147670.4| Pan troglodytes BAC clone CH251-94F1 from chromosome y, complete sequence Length = 172123 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 ctcagggaaaacaagttgag 56 |||||||||||||||||||| Sbjct: 75822 ctcagggaaaacaagttgag 75803
>gb|AC151848.4| Pan troglodytes BAC clone CH251-346F2 from chromosome y, complete sequence Length = 147582 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 ctcagggaaaacaagttgag 56 |||||||||||||||||||| Sbjct: 8257 ctcagggaaaacaagttgag 8238
>gb|AC069145.5|AC069145 Oryza sativa chromosome 10 BAC OSJNBb0094K03 genomic sequence, complete sequence Length = 135216 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 75 gtccataaagtagataactctcat 98 |||||||||||||| ||||||||| Sbjct: 19358 gtccataaagtagacaactctcat 19381
>gb|AY132367.1| Spironucleus barkhanus alcohol dehydrogenase E (adhE) mRNA, partial cds Length = 2677 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 attgtacgtgatgctgctat 29 |||||||||||||||||||| Sbjct: 463 attgtacgtgatgctgctat 482
>gb|AC147571.5| Pan troglodytes BAC clone CH251-422I9 from chromosome y, complete sequence Length = 169828 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 ctcagggaaaacaagttgag 56 |||||||||||||||||||| Sbjct: 136795 ctcagggaaaacaagttgag 136814
>gb|AC146011.4| Pan troglodytes BAC clone RP43-42M15 from chromosome y, complete sequence Length = 204487 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 ctcagggaaaacaagttgag 56 |||||||||||||||||||| Sbjct: 166915 ctcagggaaaacaagttgag 166896
>dbj|AP005499.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0412D08 Length = 150188 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 ctccatggtgtcggctttct 197 |||||||||||||||||||| Sbjct: 46779 ctccatggtgtcggctttct 46798
>dbj|AP004746.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0035F08 Length = 167446 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 ctccatggtgtcggctttct 197 |||||||||||||||||||| Sbjct: 117631 ctccatggtgtcggctttct 117650
>gb|U53890.1|LGU53890 Lama guanicoe k-casein gene, exon 4, partial cds Length = 378 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 245 aagcttcctcagaattcaccacca 268 |||||||||||||||||| ||||| Sbjct: 305 aagcttcctcagaattcatcacca 328
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 75 gtccataaagtagataactctcat 98 |||||||||||||| ||||||||| Sbjct: 16987906 gtccataaagtagacaactctcat 16987929
>emb|Y10082.1|CDKAPPCAS C.dromedarius mRNA for kappa casein Length = 819 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 245 aagcttcctcagaattcaccacca 268 |||||||||||||||||| ||||| Sbjct: 532 aagcttcctcagaattcatcacca 555 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,275,542 Number of Sequences: 3902068 Number of extensions: 3275542 Number of successful extensions: 60792 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60628 Number of HSP's gapped (non-prelim): 164 length of query: 404 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 382 effective length of database: 17,147,199,772 effective search space: 6550230312904 effective search space used: 6550230312904 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)