ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags5p04 |
|---|---|
| Clone Library Name | barley_pub |
>TM9S2_RAT (Q66HG5) Transmembrane 9 superfamily protein member 2 precursor| Length = 663 Score = 68.6 bits (166), Expect(2) = 2e-18 Identities = 31/61 (50%), Positives = 39/61 (63%) Frame = -1 Query: 621 TCAEISIVLCYFQLCSEDYLWWWRSYLTSGSSXXXXXXXXXXXXXTKLEITKFVSAILYF 442 TC+E +I+LCYF LC+EDY W WRS+LTSG + +KL+IT S ILYF Sbjct: 568 TCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLVYAIHYFFSKLQITGTASTILYF 627 Query: 441 G 439 G Sbjct: 628 G 628 Score = 43.5 bits (101), Expect(2) = 2e-18 Identities = 19/36 (52%), Positives = 23/36 (63%) Frame = -2 Query: 440 GYMLIASYAFFALTGTIGFYACLMFTRLIYSSVKIE 333 GY +I FF TGTIGF+AC F IYS VK++ Sbjct: 628 GYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663
>TM9S2_PONPY (Q5R8Y6) Transmembrane 9 superfamily protein member 2 precursor| Length = 663 Score = 68.6 bits (166), Expect(2) = 2e-18 Identities = 31/61 (50%), Positives = 39/61 (63%) Frame = -1 Query: 621 TCAEISIVLCYFQLCSEDYLWWWRSYLTSGSSXXXXXXXXXXXXXTKLEITKFVSAILYF 442 TC+E +I+LCYF LC+EDY W WRS+LTSG + +KL+IT S ILYF Sbjct: 568 TCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAVHYFFSKLQITGTASTILYF 627 Query: 441 G 439 G Sbjct: 628 G 628 Score = 43.5 bits (101), Expect(2) = 2e-18 Identities = 19/36 (52%), Positives = 23/36 (63%) Frame = -2 Query: 440 GYMLIASYAFFALTGTIGFYACLMFTRLIYSSVKIE 333 GY +I FF TGTIGF+AC F IYS VK++ Sbjct: 628 GYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663
>TM9S2_HUMAN (Q99805) Transmembrane 9 superfamily protein member 2 precursor| (p76) Length = 663 Score = 68.6 bits (166), Expect(2) = 2e-18 Identities = 31/61 (50%), Positives = 39/61 (63%) Frame = -1 Query: 621 TCAEISIVLCYFQLCSEDYLWWWRSYLTSGSSXXXXXXXXXXXXXTKLEITKFVSAILYF 442 TC+E +I+LCYF LC+EDY W WRS+LTSG + +KL+IT S ILYF Sbjct: 568 TCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAVHYFFSKLQITGTASTILYF 627 Query: 441 G 439 G Sbjct: 628 G 628 Score = 43.5 bits (101), Expect(2) = 2e-18 Identities = 19/36 (52%), Positives = 23/36 (63%) Frame = -2 Query: 440 GYMLIASYAFFALTGTIGFYACLMFTRLIYSSVKIE 333 GY +I FF TGTIGF+AC F IYS VK++ Sbjct: 628 GYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663
>TM9S2_MOUSE (P58021) Transmembrane 9 superfamily protein member 2 precursor| Length = 662 Score = 68.6 bits (166), Expect(2) = 2e-18 Identities = 31/61 (50%), Positives = 39/61 (63%) Frame = -1 Query: 621 TCAEISIVLCYFQLCSEDYLWWWRSYLTSGSSXXXXXXXXXXXXXTKLEITKFVSAILYF 442 TC+E +I+LCYF LC+EDY W WRS+LTSG + +KL+IT S ILYF Sbjct: 567 TCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAIHYFFSKLQITGTASTILYF 626 Query: 441 G 439 G Sbjct: 627 G 627 Score = 43.5 bits (101), Expect(2) = 2e-18 Identities = 19/36 (52%), Positives = 23/36 (63%) Frame = -2 Query: 440 GYMLIASYAFFALTGTIGFYACLMFTRLIYSSVKIE 333 GY +I FF TGTIGF+AC F IYS VK++ Sbjct: 627 GYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 662
>TM9S4_HUMAN (Q92544) Transmembrane 9 superfamily protein member 4| Length = 625 Score = 74.3 bits (181), Expect = 3e-13 Identities = 32/75 (42%), Positives = 46/75 (61%) Frame = -1 Query: 621 TCAEISIVLCYFQLCSEDYLWWWRSYLTSGSSXXXXXXXXXXXXXTKLEITKFVSAILYF 442 +C++ISIV+ YFQLC+EDY WWWR++L SG S KL+I +F+ ++LYF Sbjct: 530 SCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYF 589 Query: 441 GLHAHRLICILCLDG 397 G A ++ L G Sbjct: 590 GYTALMVLSFWLLTG 604 Score = 44.7 bits (104), Expect = 3e-04 Identities = 20/36 (55%), Positives = 26/36 (72%) Frame = -2 Query: 440 GYMLIASYAFFALTGTIGFYACLMFTRLIYSSVKIE 333 GY + +F+ LTGTIGFYA MF R IY++VKI+ Sbjct: 590 GYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 625
>TM9S1_PONPY (Q5R8F1) Transmembrane 9 superfamily protein member 1 precursor| Length = 606 Score = 47.8 bits (112), Expect(2) = 3e-11 Identities = 22/57 (38%), Positives = 29/57 (50%) Frame = -1 Query: 609 ISIVLCYFQLCSEDYLWWWRSYLTSGSSXXXXXXXXXXXXXTKLEITKFVSAILYFG 439 ISI L YFQL EDY WWWRS L+ GS+ + ++ V + +FG Sbjct: 515 ISIALTYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYARRSNMSGAVQTVEFFG 571 Score = 40.0 bits (92), Expect(2) = 3e-11 Identities = 16/36 (44%), Positives = 24/36 (66%) Frame = -2 Query: 440 GYMLIASYAFFALTGTIGFYACLMFTRLIYSSVKIE 333 GY L+ Y FF + GTI F++ L F R IY ++K++ Sbjct: 571 GYSLLTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD 606
>TM9S1_MOUSE (Q9DBU0) Transmembrane 9 superfamily protein member 1 precursor| Length = 606 Score = 47.8 bits (112), Expect(2) = 3e-11 Identities = 22/57 (38%), Positives = 29/57 (50%) Frame = -1 Query: 609 ISIVLCYFQLCSEDYLWWWRSYLTSGSSXXXXXXXXXXXXXTKLEITKFVSAILYFG 439 ISI L YFQL EDY WWWRS L+ GS+ + ++ V + +FG Sbjct: 515 ISIALTYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYARRSNMSGAVQTVEFFG 571 Score = 40.0 bits (92), Expect(2) = 3e-11 Identities = 16/36 (44%), Positives = 24/36 (66%) Frame = -2 Query: 440 GYMLIASYAFFALTGTIGFYACLMFTRLIYSSVKIE 333 GY L+ Y FF + GTI F++ L F R IY ++K++ Sbjct: 571 GYSLLTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD 606
>TM9S1_HUMAN (O15321) Transmembrane 9 superfamily protein member 1 precursor| (hMP70) Length = 606 Score = 47.8 bits (112), Expect(2) = 3e-11 Identities = 22/57 (38%), Positives = 29/57 (50%) Frame = -1 Query: 609 ISIVLCYFQLCSEDYLWWWRSYLTSGSSXXXXXXXXXXXXXTKLEITKFVSAILYFG 439 ISI L YFQL EDY WWWRS L+ GS+ + ++ V + +FG Sbjct: 515 ISIALTYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYARRSNMSGAVQTVEFFG 571 Score = 40.0 bits (92), Expect(2) = 3e-11 Identities = 16/36 (44%), Positives = 24/36 (66%) Frame = -2 Query: 440 GYMLIASYAFFALTGTIGFYACLMFTRLIYSSVKIE 333 GY L+ Y FF + GTI F++ L F R IY ++K++ Sbjct: 571 GYSLLTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD 606
>TM9S1_RAT (Q66HF2) Transmembrane 9 superfamily protein member 1 precursor| Length = 589 Score = 47.8 bits (112), Expect(2) = 3e-11 Identities = 22/57 (38%), Positives = 29/57 (50%) Frame = -1 Query: 609 ISIVLCYFQLCSEDYLWWWRSYLTSGSSXXXXXXXXXXXXXTKLEITKFVSAILYFG 439 ISI L YFQL EDY WWWRS L+ GS+ + ++ V + +FG Sbjct: 498 ISIALTYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYARRSNMSGAVQTVEFFG 554 Score = 40.0 bits (92), Expect(2) = 3e-11 Identities = 16/36 (44%), Positives = 24/36 (66%) Frame = -2 Query: 440 GYMLIASYAFFALTGTIGFYACLMFTRLIYSSVKIE 333 GY L+ Y FF + GTI F++ L F R IY ++K++ Sbjct: 554 GYSLLTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD 589
>TM9S3_HUMAN (Q9HD45) Transmembrane 9 superfamily protein member 3 precursor| (SM-11044-binding protein) (EP70-P-iso) Length = 589 Score = 36.6 bits (83), Expect = 0.069 Identities = 18/60 (30%), Positives = 27/60 (45%) Frame = -1 Query: 609 ISIVLCYFQLCSEDYLWWWRSYLTSGSSXXXXXXXXXXXXXTKLEITKFVSAILYFGLHA 430 ++IV YF L +EDY W W S+L++ S+ K ++ YFG A Sbjct: 498 VTIVCTYFLLNAEDYRWQWTSFLSAASTAIYVYMYSFYYYFFKTKMYGLFQTSFYFGYMA 557 Score = 36.2 bits (82), Expect = 0.090 Identities = 18/42 (42%), Positives = 24/42 (57%) Frame = -2 Query: 458 QPSFTSGYMLIASYAFFALTGTIGFYACLMFTRLIYSSVKIE 333 Q SF GYM + S A + G IG+ F R IY++VKI+ Sbjct: 548 QTSFYFGYMAVFSTALGIMCGAIGYMGTSAFVRKIYTNVKID 589
>TM9S3_MOUSE (Q9ET30) Transmembrane 9 superfamily protein member 3 precursor| Length = 587 Score = 36.6 bits (83), Expect = 0.069 Identities = 18/60 (30%), Positives = 27/60 (45%) Frame = -1 Query: 609 ISIVLCYFQLCSEDYLWWWRSYLTSGSSXXXXXXXXXXXXXTKLEITKFVSAILYFGLHA 430 ++IV YF L +EDY W W S+L++ S+ K ++ YFG A Sbjct: 496 VTIVCTYFLLNAEDYRWQWTSFLSAASTAIYVYMYSFYYYFFKTKMYGLFQTSFYFGYMA 555 Score = 36.2 bits (82), Expect = 0.090 Identities = 18/42 (42%), Positives = 24/42 (57%) Frame = -2 Query: 458 QPSFTSGYMLIASYAFFALTGTIGFYACLMFTRLIYSSVKIE 333 Q SF GYM + S A + G IG+ F R IY++VKI+ Sbjct: 546 QTSFYFGYMAVFSTALGIMCGAIGYMGTSAFVRKIYTNVKID 587
>EMP70_YEAST (P32802) Endosomal P24A protein precursor (70 kDa endomembrane| protein) (Pheromone alpha-factor transporter) (Acidic 24 kDa late endocytic intermediate component) Length = 667 Score = 36.2 bits (82), Expect = 0.090 Identities = 15/36 (41%), Positives = 24/36 (66%) Frame = -2 Query: 440 GYMLIASYAFFALTGTIGFYACLMFTRLIYSSVKIE 333 GY + S +TG+IGF + ++F R IYSS+K++ Sbjct: 632 GYSSVISLLCCLVTGSIGFISSMLFVRKIYSSIKVD 667 Score = 36.2 bits (82), Expect = 0.090 Identities = 19/72 (26%), Positives = 36/72 (50%) Frame = -1 Query: 621 TCAEISIVLCYFQLCSEDYLWWWRSYLTSGSSXXXXXXXXXXXXXTKLEITKFVSAILYF 442 T + ++I++ Y LC E++ W WR ++ G+ TK ++ F + +LY Sbjct: 573 TSSLVTILITYHSLCLENWKWQWRGFIIGGAG-CALYVFIHSILFTKFKLGGFTTIVLYV 631 Query: 441 GLHAHRLICILC 406 G + +I +LC Sbjct: 632 GYSS--VISLLC 641
>GRN_CAVPO (P28797) Granulins precursor (Proepithelin) (PEPI) [Contains:| Acrogranin; Granulin-1; Granulin-2; Granulin-3; Granulin-4; Granulin-5; Granulin-6; Granulin-7] (Fragment) Length = 591 Score = 30.8 bits (68), Expect = 3.8 Identities = 24/63 (38%), Positives = 29/63 (46%) Frame = -3 Query: 592 LLPAMQ*GLPMVVAIIPDIRIFCPVPLPLCDFLLLHKAGDHKVCVSHPLLRATCSSPHMH 413 LLPA LP V I PD R CP C L +G++ C P+ A C S H+H Sbjct: 197 LLPA---ALPTSV-ICPDSRSQCPDDTTCC----LLASGEYGCC---PMPNAICCSDHLH 245 Query: 412 SLP 404 P Sbjct: 246 CCP 248
>OLF8_CHICK (Q98913) Olfactory receptor-like protein COR8 (Fragment)| Length = 159 Score = 30.4 bits (67), Expect = 4.9 Identities = 14/40 (35%), Positives = 23/40 (57%) Frame = -3 Query: 526 CPVPLPLCDFLLLHKAGDHKVCVSHPLLRATCSSPHMHSL 407 C +PLP C +++ H C ++PLL+ TCS ++ L Sbjct: 39 CLLPLPFCGPNVIN----HYFCDTNPLLKLTCSDGRLNEL 74
>PDZK2_HUMAN (Q86UT5) PDZ domain-containing protein 2 (Intestinal and| kidney-enriched PDZ protein) (DLNB27 protein) Length = 571 Score = 30.0 bits (66), Expect = 6.5 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 21/72 (29%) Frame = -3 Query: 571 GLPMVVAIIPDI----RIFCPVPLPL---------CDFLLLHKAGDHKVCVSH------- 452 GLP++ A++ R+F PVP+PL L H+VC +H Sbjct: 32 GLPLITALVGSRDRRGRVFSPVPVPLPTNPTTQHPTRQKLPSTLSGHRVCQAHGEPVLGL 91 Query: 451 -PLLRATCSSPH 419 PLL C PH Sbjct: 92 CPLLPLFCCPPH 103 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,461,112 Number of Sequences: 219361 Number of extensions: 1623123 Number of successful extensions: 4116 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 4007 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4116 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6370891296 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
