ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5p03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RPIA2_YERPS (Q66CS8) Ribose-5-phosphate isomerase A 2 (EC 5.3.1.... 34 0.31
2RPIA2_YERPE (Q8ZGJ9) Ribose-5-phosphate isomerase A 2 (EC 5.3.1.... 34 0.31
3TRMD_PSEAE (Q9HXQ1) tRNA (guanine-N(1)-)-methyltransferase (EC 2... 29 10.0
4P2OX_PHACH (Q6QWR1) Pyranose 2-oxidase precursor (EC 1.1.3.10) (... 29 10.0

>RPIA2_YERPS (Q66CS8) Ribose-5-phosphate isomerase A 2 (EC 5.3.1.6)|
           (Phosphoriboisomerase A 2) (PRI 2)
          Length = 236

 Score = 34.3 bits (77), Expect = 0.31
 Identities = 22/58 (37%), Positives = 33/58 (56%)
 Frame = +2

Query: 272 TEHFSVRPTGSFRFTKHMSPGLQLRCSTPAKIAIKRATTKIA*PSRDFASEISRPGQV 445
           T HF VR  G     +H++ GLQL C+T +     RAT+++A   RD   E+S P ++
Sbjct: 34  TSHFFVRELG-----QHVAKGLQLTCTTTS-----RATSEVA---RDVGIELSDPNEM 78



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>RPIA2_YERPE (Q8ZGJ9) Ribose-5-phosphate isomerase A 2 (EC 5.3.1.6)|
           (Phosphoriboisomerase A 2) (PRI 2)
          Length = 236

 Score = 34.3 bits (77), Expect = 0.31
 Identities = 22/58 (37%), Positives = 33/58 (56%)
 Frame = +2

Query: 272 TEHFSVRPTGSFRFTKHMSPGLQLRCSTPAKIAIKRATTKIA*PSRDFASEISRPGQV 445
           T HF VR  G     +H++ GLQL C+T +     RAT+++A   RD   E+S P ++
Sbjct: 34  TSHFFVRELG-----QHVAKGLQLTCTTTS-----RATSEVA---RDVGIELSDPNEM 78



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>TRMD_PSEAE (Q9HXQ1) tRNA (guanine-N(1)-)-methyltransferase (EC 2.1.1.31)|
           (M1G-methyltransferase) (tRNA [GM37] methyltransferase)
          Length = 252

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -3

Query: 609 DEHFLEFHCHMRTE-ASRILLHRSLPTVASQSRRCRVVPGVRIHACSAEVCTFSDG 445
           DE F+E H          +L    LP +       R++PG   HA SAE  +F+DG
Sbjct: 124 DERFIEEHVDEEWSIGDYVLSGGELPAMVLVDAVTRLLPGALGHADSAEEDSFTDG 179



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>P2OX_PHACH (Q6QWR1) Pyranose 2-oxidase precursor (EC 1.1.3.10) (P2Ox) (P2O)|
           (Pyranose oxidase) (PROD) (POD) (POx) (Pyranose:oxygen
           2-oxidoreductase) (Glucose 2-oxidase)
           (FAD-oxidoreductase)
          Length = 621

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = +2

Query: 437 GQVPSENVQTSAEQACILTPGTTRQRLDCDATVGNDRCK 553
           G +P    Q       +   GTTR  LD   TVGN  CK
Sbjct: 536 GYLPGSEPQFMTPGLALHLAGTTRCGLDTQKTVGNTHCK 574


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,795,137
Number of Sequences: 219361
Number of extensions: 1758865
Number of successful extensions: 3666
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3666
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5767334219
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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