ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags5p01 |
|---|---|
| Clone Library Name | barley_pub |
>GLTP_MOUSE (Q9JL62) Glycolipid transfer protein (GLTP)| Length = 208 Score = 55.8 bits (133), Expect = 1e-07 Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 9/117 (7%) Frame = -2 Query: 560 TRNLLRVKRGIDMVKVLFEQILVTEG-----NSLKDAATKAYAQVFAPHHGWAIRKAVGA 396 T LL +KRG+ ++V + I E N ++ A KAY +HGW ++K A Sbjct: 90 TLALLWLKRGLRFIQVFLQSICDGERDENHPNLIRVNANKAYEMALKKYHGWLVQKIFKA 149 Query: 395 GMYALPSKSQLLKKLNEDENSARAQ----MQSFVRSSGQVILYVEDLFTSSNLGLDW 237 +YA P KS LK L++ +N + ++ F+ + I + D++T N LD+ Sbjct: 150 ALYAAPYKSDFLKALSKGQNVTEEECLEKIRLFLVNYTATIDAIYDMYTKMNAELDY 206
>GLTP_HUMAN (Q9NZD2) Glycolipid transfer protein (GLTP)| Length = 208 Score = 54.3 bits (129), Expect = 4e-07 Identities = 37/139 (26%), Positives = 69/139 (49%), Gaps = 10/139 (7%) Frame = -2 Query: 623 TLPSMVELDIQKGTVRQPG-SHTRNLLRVKRGIDMVKVLFEQILVTEG-----NSLKDAA 462 TL +++E++ + P T L+ +KRG+ ++V + I E N ++ A Sbjct: 68 TLQNILEVEKEMYGAEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNA 127 Query: 461 TKAYAQVFAPHHGWAIRKAVGAGMYALPSKSQLLKKLNEDENSARAQ----MQSFVRSSG 294 TKAY +HGW ++K A +YA P KS LK L++ +N + ++ F+ + Sbjct: 128 TKAYEMALKKYHGWIVQKIFQAALYAAPYKSDFLKALSKGQNVTEEECLEKIRLFLVNYT 187 Query: 293 QVILYVEDLFTSSNLGLDW 237 I + +++T N L++ Sbjct: 188 ATIDVIYEMYTQMNAELNY 206
>GLTP_PIG (P68266) Glycolipid transfer protein (GLTP)| Length = 208 Score = 53.9 bits (128), Expect = 5e-07 Identities = 37/139 (26%), Positives = 69/139 (49%), Gaps = 10/139 (7%) Frame = -2 Query: 623 TLPSMVELDIQKGTVRQPG-SHTRNLLRVKRGIDMVKVLFEQILVTEG-----NSLKDAA 462 TL +++E++ + P T L+ +KRG+ ++V + I E N ++ A Sbjct: 68 TLQNILEVEKEMYGAEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNA 127 Query: 461 TKAYAQVFAPHHGWAIRKAVGAGMYALPSKSQLLKKLNEDENSARAQ----MQSFVRSSG 294 TKAY +HGW ++K A +YA P KS LK L++ +N + ++ F+ + Sbjct: 128 TKAYEMALKKYHGWIVQKIFQAALYAAPYKSDFLKALSKGQNVTEEECLEKVRLFLVNYT 187 Query: 293 QVILYVEDLFTSSNLGLDW 237 I + +++T N L++ Sbjct: 188 ATIDVIYEMYTRMNAELNY 206
>GLTP_BOVIN (P68265) Glycolipid transfer protein (GLTP)| Length = 208 Score = 53.9 bits (128), Expect = 5e-07 Identities = 37/139 (26%), Positives = 69/139 (49%), Gaps = 10/139 (7%) Frame = -2 Query: 623 TLPSMVELDIQKGTVRQPG-SHTRNLLRVKRGIDMVKVLFEQILVTEG-----NSLKDAA 462 TL +++E++ + P T L+ +KRG+ ++V + I E N ++ A Sbjct: 68 TLQNILEVEKEMYGAEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNA 127 Query: 461 TKAYAQVFAPHHGWAIRKAVGAGMYALPSKSQLLKKLNEDENSARAQ----MQSFVRSSG 294 TKAY +HGW ++K A +YA P KS LK L++ +N + ++ F+ + Sbjct: 128 TKAYEMALKKYHGWIVQKIFQAALYAAPYKSDFLKALSKGQNVTEEECLEKVRLFLVNYT 187 Query: 293 QVILYVEDLFTSSNLGLDW 237 I + +++T N L++ Sbjct: 188 ATIDVIYEMYTRMNAELNY 206
>CREA_ASPAC (O94166) DNA-binding protein creA (Carbon catabolite repressor)| Length = 431 Score = 32.3 bits (72), Expect = 1.5 Identities = 29/81 (35%), Positives = 31/81 (38%), Gaps = 20/81 (24%) Frame = +2 Query: 389 TFQHQLLSLWPSHGEEQTPEHKPLLLRPSGSC----------------LL*PISAQTE-- 514 TF H LLS P H TP H P LRP GS L P+ Q E Sbjct: 305 TFSHDLLSPTPDHTPLATPAHSP-RLRPLGSSDLHLPSIRHLSLHHTPALAPMEPQPEGP 363 Query: 515 --LSPYQSHA*PSVDSSYGSP 571 SP QSH PS+ P Sbjct: 364 SYYSPSQSHG-PSITDIMSKP 383
>ARSR2_ECOLI (P52144) Arsenical resistance operon repressor| Length = 117 Score = 32.0 bits (71), Expect = 1.9 Identities = 16/51 (31%), Positives = 22/51 (43%) Frame = -3 Query: 703 RHRLQVRRDGLRRPRLMIYWRHPRRFRHCPPWLSLTFRRALLGSRGAIRGI 551 RH +R GL R W H R H P W +L +A L + ++ I Sbjct: 49 RHLAMLRESGLLLDRKQGKWVHYRLSPHIPSWAALVIEQAWLSQQDDVQAI 99
>ADA29_HUMAN (Q9UKF5) ADAM 29 precursor (A disintegrin and metalloproteinase| domain 29) Length = 820 Score = 31.6 bits (70), Expect = 2.5 Identities = 24/79 (30%), Positives = 34/79 (43%) Frame = +2 Query: 419 PSHGEEQTPEHKPLLLRPSGSCLL*PISAQTELSPYQSHA*PSVDSSYGSPAA*QCPSEC 598 PS EE+ + +P L P + P +Q ++P QSH P V S P PS+ Sbjct: 713 PSAKEEEKIQRRPHELPPQSQPWVMPSQSQPPVTPSQSH--PQVMPSQSQPPV--MPSQS 768 Query: 599 QAQPWRAMSKSSWMPPVDH 655 Q + S+ MP H Sbjct: 769 HPQLTPSQSQPPVMPSQSH 787
>CREA_ASPNG (Q05620) DNA-binding protein creA (Carbon catabolite repressor)| Length = 427 Score = 31.2 bits (69), Expect = 3.2 Identities = 27/81 (33%), Positives = 29/81 (35%), Gaps = 20/81 (24%) Frame = +2 Query: 389 TFQHQLLSLWPSHGEEQTPEHKPLLLRPSGSC----------------LL*PISAQTE-- 514 TF H LS P H TP H P LRP GS L P+ Q E Sbjct: 301 TFSHDSLSPTPDHTPLATPAHSP-RLRPLGSSDLHLPSIRHLSLHHTPALAPMEPQPEGP 359 Query: 515 --LSPYQSHA*PSVDSSYGSP 571 SP Q H PS+ P Sbjct: 360 NYYSPSQGHHGPSISDIMSKP 380
>HS90A_CHICK (P11501) Heat shock protein HSP 90-alpha| Length = 728 Score = 30.4 bits (67), Expect = 5.5 Identities = 25/88 (28%), Positives = 43/88 (48%) Frame = -2 Query: 584 TVRQPGSHTRNLLRVKRGIDMVKVLFEQILVTEGNSLKDAATKAYAQVFAPHHGWAIRKA 405 T+RQ +N VK D+V +L+E L++ G SL+D T A G I + Sbjct: 641 TLRQKAEADKNDKSVK---DLVILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGIDED 697 Query: 404 VGAGMYALPSKSQLLKKLNEDENSARAQ 321 A A P+ ++ + L D++++R + Sbjct: 698 DTAAEEASPAVTEEMPPLEGDDDTSRME 725
>NPL4_RAT (Q9ES54) Nuclear protein localization protein 4 homolog (Protein| NPL4) Length = 607 Score = 30.0 bits (66), Expect = 7.2 Identities = 17/50 (34%), Positives = 23/50 (46%) Frame = +2 Query: 47 EFQVCNNGSRIHPSRTSTAARLIEFTLQLRTLKLKHQDQLQLFEGTAHHP 196 EF NNG ++ +R T + L LK+KH D L LF + P Sbjct: 35 EFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLFPSSLAGP 84
>NPL4_MOUSE (P60670) Nuclear protein localization protein 4 homolog (Protein| NPL4) Length = 607 Score = 30.0 bits (66), Expect = 7.2 Identities = 17/50 (34%), Positives = 23/50 (46%) Frame = +2 Query: 47 EFQVCNNGSRIHPSRTSTAARLIEFTLQLRTLKLKHQDQLQLFEGTAHHP 196 EF NNG ++ +R T + L LK+KH D L LF + P Sbjct: 35 EFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLFPSSLAGP 84
>FAD3C_RICCO (P48619) Omega-3 fatty acid desaturase, chloroplast precursor (EC| 1.14.19.-) Length = 460 Score = 29.6 bits (65), Expect = 9.4 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = -1 Query: 486 RQLPEGRSNKGLCSGVCSSPWLGHKESSWCWNV 388 R+LP+ +S LCS S W K+S+W NV Sbjct: 37 RELPDSKSYN-LCSSFKVSSWSNSKQSNWALNV 68
>NPL4_HUMAN (Q8TAT6) Nuclear protein localization protein 4 homolog (Protein| NPL4) Length = 607 Score = 29.6 bits (65), Expect = 9.4 Identities = 17/50 (34%), Positives = 22/50 (44%) Frame = +2 Query: 47 EFQVCNNGSRIHPSRTSTAARLIEFTLQLRTLKLKHQDQLQLFEGTAHHP 196 EF NNG ++ +R T L LK+KH D L LF + P Sbjct: 35 EFGFQNNGFSVYINRNKTGEITASSNKSLNLLKIKHGDLLFLFPSSLAGP 84 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 103,150,617 Number of Sequences: 219361 Number of extensions: 2188588 Number of successful extensions: 5982 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 5778 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5979 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7139613222 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
