ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags6d24 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK104938.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-106-C05, full insert sequence Length = 575 Score = 167 bits (84), Expect = 6e-38 Identities = 139/156 (89%), Gaps = 1/156 (0%) Strand = Plus / Minus Query: 474 tatgattcattttctttctcagccatttcctttttataagcctgcaacctttctttaaat 533 |||||||| || |||| |||||||||||||||||||| ||| ||||| |||||| || Sbjct: 404 tatgattccttgtcttgttcagccatttcctttttataggccagcaactgttctttgaac 345 Query: 534 ttcttgctctcttcaaagtttgcctttctcttcacagctttctcctgccggaagcaccta 593 |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| | Sbjct: 344 ttcttgctctcttcaaagtttgcctttctcttcaaagctttctcttgccggaagcactga 285 Query: 594 tcaagcttaatcttaaggatctgtgcattcaccaaa 629 || ||||||||||||| ||||||||||||| ||||| Sbjct: 284 tctagcttaatcttaa-gatctgtgcattcgccaaa 250
>dbj|AK067218.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098J23, full insert sequence Length = 2420 Score = 167 bits (84), Expect = 6e-38 Identities = 139/156 (89%), Gaps = 1/156 (0%) Strand = Plus / Minus Query: 474 tatgattcattttctttctcagccatttcctttttataagcctgcaacctttctttaaat 533 |||||||| || |||| |||||||||||||||||||| ||| ||||| |||||| || Sbjct: 381 tatgattccttgtcttgttcagccatttcctttttataggccagcaactgttctttgaac 322 Query: 534 ttcttgctctcttcaaagtttgcctttctcttcacagctttctcctgccggaagcaccta 593 |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| | Sbjct: 321 ttcttgctctcttcaaagtttgcctttctcttcaaagctttctcttgccggaagcactga 262 Query: 594 tcaagcttaatcttaaggatctgtgcattcaccaaa 629 || ||||||||||||| ||||||||||||| ||||| Sbjct: 261 tctagcttaatcttaa-gatctgtgcattcgccaaa 227
>gb|AY107639.1| Zea mays PCO092697 mRNA sequence Length = 656 Score = 129 bits (65), Expect = 1e-26 Identities = 117/133 (87%), Gaps = 1/133 (0%) Strand = Plus / Minus Query: 488 tttctcagccatttcctttttataagcctgcaacctttctttaaatttcttgctctcttc 547 |||||| || |||||| |||| ||||||| |||| |||||||||| ||||||||||||| Sbjct: 505 tttctctgcaatttcccttttgtaagccttcaactgttctttaaatctcttgctctcttc 446 Query: 548 aaagtttgcctttctcttcacagctttctcctgccggaagcacctatcaagcttaatctt 607 |||||||||||||||||||| |||||||||||| |||||||| | ||| ||||| || || Sbjct: 445 aaagtttgcctttctcttcaaagctttctcctgtcggaagcagcgatctagcttgatttt 386 Query: 608 aaggatctgtgca 620 |||| |||||||| Sbjct: 385 aagg-tctgtgca 374
>gb|AC157500.1| Oryza sativa (japonica cultivar-group) BAC clone OSJNBb0056O04, from chromosome 4, complete sequence Length = 90825 Score = 117 bits (59), Expect = 5e-23 Identities = 92/103 (89%) Strand = Plus / Plus Query: 474 tatgattcattttctttctcagccatttcctttttataagcctgcaacctttctttaaat 533 |||||||| || |||| |||||||||||||||||||| ||| ||||| |||||| || Sbjct: 7630 tatgattccttgtcttgttcagccatttcctttttataggccagcaactgttctttgaac 7689 Query: 534 ttcttgctctcttcaaagtttgcctttctcttcacagctttct 576 |||||||||||||||||||||||||||||||||| |||||||| Sbjct: 7690 ttcttgctctcttcaaagtttgcctttctcttcaaagctttct 7732 Score = 54.0 bits (27), Expect = 6e-04 Identities = 46/51 (90%), Gaps = 1/51 (1%) Strand = Plus / Plus Query: 579 tgccggaagcacctatcaagcttaatcttaaggatctgtgcattcaccaaa 629 |||||||||||| ||| ||||||||||||| ||||||||||||| ||||| Sbjct: 7864 tgccggaagcactgatctagcttaatcttaa-gatctgtgcattcgccaaa 7913
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 65.9 bits (33), Expect = 2e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 524 ttctttaaatttcttgctctcttcaaagtttgcctttctcttcacagctttct 576 |||||| ||||||||||||||||| ||||| ||||| ||||||| |||||||| Sbjct: 21254351 ttctttgaatttcttgctctcttcgaagttagccttcctcttcaaagctttct 21254403 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 200 atttcatacataagtttttacagt 223 |||| ||||||||||||||||||| Sbjct: 5271865 atttgatacataagtttttacagt 5271888
>dbj|AP005883.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0435E12 Length = 143188 Score = 65.9 bits (33), Expect = 2e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 524 ttctttaaatttcttgctctcttcaaagtttgcctttctcttcacagctttct 576 |||||| ||||||||||||||||| ||||| ||||| ||||||| |||||||| Sbjct: 36886 ttctttgaatttcttgctctcttcgaagttagccttcctcttcaaagctttct 36938
>gb|AC151529.20| Medicago truncatula clone mth2-7n23, complete sequence Length = 134908 Score = 63.9 bits (32), Expect = 6e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 537 ttgctctcttcaaagtttgcctttctcttcacagctttct 576 ||||||| ||||||||| |||||||||||||||||||||| Sbjct: 128951 ttgctcttttcaaagttggcctttctcttcacagctttct 128912
>ref|XM_790484.1| PREDICTED: Strongylocentrotus purpuratus similar to exportin 1, CRM1 homolog (LOC590897), partial mRNA Length = 609 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 483 ttttctttctcagccatttcctt 505 ||||||||||||||||||||||| Sbjct: 254 ttttctttctcagccatttcctt 232
>emb|AL121612.5|CNS01DS1 Human chromosome 14 DNA sequence BAC R-179A9 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 180914 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Minus Query: 244 gacttattgtctatatatgatggaaat 270 |||||||||||| |||||||||||||| Sbjct: 136157 gacttattgtctctatatgatggaaat 136131
>dbj|AP004782.3| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-103B16, complete sequence Length = 119191 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 59 ctaggtcatagcaatgtaattta 81 ||||||||||||||||||||||| Sbjct: 39888 ctaggtcatagcaatgtaattta 39866
>gb|AC119857.10| Mus musculus chromosome 3, clone RP23-257A18, complete sequence Length = 152106 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 481 cattttctttctcagccatttc 502 |||||||||||||||||||||| Sbjct: 126288 cattttctttctcagccatttc 126267
>gb|AC164002.4| Mus musculus chromosome 3, clone RP24-114A9, complete sequence Length = 198340 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 481 cattttctttctcagccatttc 502 |||||||||||||||||||||| Sbjct: 138774 cattttctttctcagccatttc 138795
>gb|AC153384.4| Mus musculus 6 BAC RP23-388D3 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 203979 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 258 atatgatggaaatggactaacc 279 |||||||||||||||||||||| Sbjct: 180497 atatgatggaaatggactaacc 180518
>emb|AL590991.14| Mouse DNA sequence from clone RP23-255N16 on chromosome 11, complete sequence Length = 194872 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 115 catatacatataataagttaat 136 |||||||||||||||||||||| Sbjct: 97190 catatacatataataagttaat 97169
>ref|XM_508013.1| PREDICTED: Pan troglodytes similar to KIAA0185 (LOC450711), mRNA Length = 7176 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 566 cacagctttctcctgccggaa 586 ||||||||||||||||||||| Sbjct: 6741 cacagctttctcctgccggaa 6721
>ref|XM_656258.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN3746.2), mRNA Length = 1878 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 483 ttttctttctcagccatttcctttt 507 |||||||||||| |||||||||||| Sbjct: 1667 ttttctttctcatccatttcctttt 1643
>ref|NM_014976.1| Homo sapiens programmed cell death 11 (PDCD11), mRNA Length = 6416 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 566 cacagctttctcctgccggaa 586 ||||||||||||||||||||| Sbjct: 5268 cacagctttctcctgccggaa 5248
>gb|AC164306.3| Mus musculus BAC clone RP23-190A21 from chromosome 17, complete sequence Length = 206180 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 552 tttgcctttctcttcacagct 572 ||||||||||||||||||||| Sbjct: 7116 tttgcctttctcttcacagct 7136
>ref|XM_754347.1| Ustilago maydis 521 hypothetical protein (UM03293.1) partial mRNA Length = 4521 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 487 ctttctcagccatttcctttt 507 ||||||||||||||||||||| Sbjct: 637 ctttctcagccatttcctttt 617
>emb|AL161622.12| Human DNA sequence from clone RP3-402H5 on chromosome 6p12.3-21.1 Contains the 3' end of a gene for a novel protein similar to seven transmembrane receptor (Rhodopsin family), complete sequence Length = 131967 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 483 ttttctttctcagccatttcc 503 ||||||||||||||||||||| Sbjct: 55540 ttttctttctcagccatttcc 55520
>emb|AL139339.22| Human DNA sequence from clone RP11-225H22 on chromosome 10 Contains the 3' end of the PDCD11 gene for programmed cell death 11, the 5' end of the NEURL gene for neuralized-like (Drosophila), two novel genes, the FAM26A gene for family with sequence similarity 26, member A, the FAM26B gene for family with sequence similarity 26, member B, the FAM26C gene for family with sequence similarity 26, member C and three CpG islands, complete sequence Length = 103826 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 566 cacagctttctcctgccggaa 586 ||||||||||||||||||||| Sbjct: 21432 cacagctttctcctgccggaa 21412
>emb|AL031287.3|HS703H14 Human DNA sequence from clone RP4-703H14 on chromosome 1q23.2-24.3 Contains part of a novel gene, complete sequence Length = 74729 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 75 taatttaatgaccagtaattt 95 ||||||||||||||||||||| Sbjct: 67422 taatttaatgaccagtaattt 67442
>emb|CR602457.1| full-length cDNA clone CS0DI007YI24 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1468 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 566 cacagctttctcctgccggaa 586 ||||||||||||||||||||| Sbjct: 351 cacagctttctcctgccggaa 331
>gb|AC008608.7| Homo sapiens chromosome 5 clone CTB-113I20, complete sequence Length = 160672 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 549 aagtttgcctttctcttcaca 569 ||||||||||||||||||||| Sbjct: 90359 aagtttgcctttctcttcaca 90379
>gb|AY007124.1| Homo sapiens clone CDABP0021 mRNA sequence Length = 1855 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 566 cacagctttctcctgccggaa 586 ||||||||||||||||||||| Sbjct: 1194 cacagctttctcctgccggaa 1214
>dbj|D80007.1| Homo sapiens KIAA0185 mRNA, complete cds Length = 5823 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 566 cacagctttctcctgccggaa 586 ||||||||||||||||||||| Sbjct: 5221 cacagctttctcctgccggaa 5201
>emb|AL840635.6| Mouse DNA sequence from clone RP23-418D21 on chromosome 2, complete sequence Length = 201328 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 86 ccagtaatttcctaccttacaagat 110 |||||||||||||||||||| |||| Sbjct: 66064 ccagtaatttcctaccttactagat 66040
>gb|AC131921.9| Mus musculus chromosome 12, clone RP24-231P11, complete sequence Length = 163117 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 atgatggaaatggactaacc 279 |||||||||||||||||||| Sbjct: 12586 atgatggaaatggactaacc 12567
>ref|XM_455356.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F06094g predicted mRNA Length = 1080 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 488 tttctcagccatttcctttt 507 |||||||||||||||||||| Sbjct: 1038 tttctcagccatttcctttt 1019
>gb|AC144401.2| Didelphis virginiana clone LBNL3-270H19, complete sequence Length = 180378 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 474 tatgattcattttctttctc 493 |||||||||||||||||||| Sbjct: 124720 tatgattcattttctttctc 124739
>gb|AC099863.14| Mus musculus chromosome 3, clone RP23-6F2, complete sequence Length = 245784 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 529 taaatttcttgctctcttca 548 |||||||||||||||||||| Sbjct: 21811 taaatttcttgctctcttca 21830
>gb|AC083948.3| Mus musculus strain C57BL6/J chromosome 5 clone RP23-67P7, complete sequence Length = 214125 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 cagccacagaaggaaatatg 310 |||||||||||||||||||| Sbjct: 94929 cagccacagaaggaaatatg 94910
>gb|AC123957.4| Mus musculus BAC clone RP23-302N2 from 12, complete sequence Length = 206661 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 tcatagcaatgtaatttaat 83 |||||||||||||||||||| Sbjct: 39248 tcatagcaatgtaatttaat 39267
>gb|AC112270.3| Mus musculus BAC clone RP24-117A22 from 5, complete sequence Length = 180594 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 408 aaagttgaagccgcaggatt 427 |||||||||||||||||||| Sbjct: 116994 aaagttgaagccgcaggatt 117013
>ref|XM_773946.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_49_50528_50965) partial mRNA Length = 438 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 588 cacctatcaagcttaatctt 607 |||||||||||||||||||| Sbjct: 281 cacctatcaagcttaatctt 262
>gb|AC110784.3| Homo sapiens BAC clone RP11-417D8 from 7, complete sequence Length = 38891 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 547 caaagtttgcctttctcttc 566 |||||||||||||||||||| Sbjct: 20960 caaagtttgcctttctcttc 20979
>gb|AC138171.17| Medicago truncatula clone mth2-7f10, complete sequence Length = 104336 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 533 tttcttgctctcttcaaagtttgc 556 ||||||||| |||||||||||||| Sbjct: 16110 tttcttgctgtcttcaaagtttgc 16133
>gb|AC107638.17| Mus musculus, clone RP23-44D14, complete sequence Length = 231286 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 atttcatacataagttttta 219 |||||||||||||||||||| Sbjct: 181017 atttcatacataagttttta 181036
>emb|AL450428.6| Human DNA sequence from clone RP11-264J11 on chromosome 9, complete sequence Length = 84808 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 aaacatgaagtaaagaaaag 389 |||||||||||||||||||| Sbjct: 78123 aaacatgaagtaaagaaaag 78104
>gb|DQ450514.1| Brevipalpus phoenicis haplotype P13 cytochrome oxidase subunit 1 gene, partial cds; mitochondrial Length = 410 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 304 aaatatgaacttctaaatagatta 327 ||||||||||||||||||| |||| Sbjct: 289 aaatatgaacttctaaataaatta 266
>emb|AL133269.17| Human DNA sequence from clone RP3-468K3 on chromosome 6q25-26 Contains a beta tubulin pseudogene, complete sequence Length = 90687 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 gcatatacatataataagttaatt 137 |||||||||| ||||||||||||| Sbjct: 20171 gcatatacatctaataagttaatt 20194
>emb|CR382137.1| Debaryomyces hansenii chromosome E of strain CBS767 of Debaryomyces hansenii Length = 2037969 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 589 acctatcaagcttaatctta 608 |||||||||||||||||||| Sbjct: 577638 acctatcaagcttaatctta 577657
>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140 of Kluyveromyces lactis Length = 2602197 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 488 tttctcagccatttcctttt 507 |||||||||||||||||||| Sbjct: 590340 tttctcagccatttcctttt 590359
>gb|AC118273.4| Homo sapiens chromosome 11, clone RP11-107P7, complete sequence Length = 187529 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 478 attcattttctttctcagcc 497 |||||||||||||||||||| Sbjct: 122575 attcattttctttctcagcc 122556
>gb|AC162794.4| Mus musculus chromosome 3, clone RP24-120B22, complete sequence Length = 139773 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 529 taaatttcttgctctcttca 548 |||||||||||||||||||| Sbjct: 56560 taaatttcttgctctcttca 56541
>emb|BX571868.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment 10/17 Length = 345829 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 418 ccgcaggattgcagcaaaaa 437 |||||||||||||||||||| Sbjct: 279698 ccgcaggattgcagcaaaaa 279717
>emb|AL844589.3| Mouse DNA sequence from clone RP23-139C9 on chromosome 4, complete sequence Length = 162642 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 tttttacagtacaacaccag 233 |||||||||||||||||||| Sbjct: 71371 tttttacagtacaacaccag 71390
>emb|CR857271.1| Pongo pygmaeus mRNA; cDNA DKFZp469P1321 (from clone DKFZp469P1321) Length = 3269 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 371 aacatgaagtaaagaaaagt 390 |||||||||||||||||||| Sbjct: 3039 aacatgaagtaaagaaaagt 3020
>gb|AC117746.6| Homo sapiens chromosome 11, clone RP11-159C12, complete sequence Length = 157527 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 478 attcattttctttctcagcc 497 |||||||||||||||||||| Sbjct: 44340 attcattttctttctcagcc 44359
>gb|AC182841.2| Pan troglodytes BAC clone CH251-667I24 from chromosome 11, complete sequence Length = 189657 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 478 attcattttctttctcagcc 497 |||||||||||||||||||| Sbjct: 115627 attcattttctttctcagcc 115646
>gb|AC005885.1| Homo sapiens 12q24.2 PAC RPCI5-1135M4 (Roswell Park Cancer Institute Human PAC Library) complete sequence Length = 84780 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 526 ctttaaatttcttgctctct 545 |||||||||||||||||||| Sbjct: 44624 ctttaaatttcttgctctct 44605
>gb|AY320019.1| Brevipalpus phoenicis isolate Brevph17 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial gene for mitochondrial product Length = 374 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 304 aaatatgaacttctaaatagatta 327 ||||||||||||||||||| |||| Sbjct: 305 aaatatgaacttctaaataaatta 282
>gb|AC150313.7| Mus musculus BAC clone RP23-436A18 from chromosome 7, complete sequence Length = 204095 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 atttcatacataagttttta 219 |||||||||||||||||||| Sbjct: 32515 atttcatacataagttttta 32534
>dbj|AK029225.1| Mus musculus 0 day neonate head cDNA, RIKEN full-length enriched library, clone:4831430G22 product:unclassifiable, full insert sequence Length = 3465 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 cagccacagaaggaaatatg 310 |||||||||||||||||||| Sbjct: 142 cagccacagaaggaaatatg 123
>gb|AC155839.4| Mus musculus 6 BAC RP24-96J4 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 173368 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 183 gtttcatagttgtgaagatttcat 206 |||||||||||||||| ||||||| Sbjct: 77001 gtttcatagttgtgaaaatttcat 76978
>gb|AC138744.4| Homo sapiens chromosome 17, clone RP11-859E19, complete sequence Length = 177325 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 485 ttctttctcagccatttcct 504 |||||||||||||||||||| Sbjct: 3115 ttctttctcagccatttcct 3134
>gb|AC016489.18| Homo sapiens chromosome 17, clone RP11-329L6, complete sequence Length = 179219 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 485 ttctttctcagccatttcct 504 |||||||||||||||||||| Sbjct: 178539 ttctttctcagccatttcct 178558
>dbj|AP000366.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0437H03 Length = 170173 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 200 atttcatacataagtttttacagt 223 |||| ||||||||||||||||||| Sbjct: 165318 atttgatacataagtttttacagt 165341
>gb|AC129531.8| Homo sapiens chromosome 17, clone RP11-188B1, complete sequence Length = 164068 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 485 ttctttctcagccatttcct 504 |||||||||||||||||||| Sbjct: 129057 ttctttctcagccatttcct 129076
>emb|AL136297.3|CNS01DW1 Human chromosome 14 DNA sequence BAC R-60K23 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 163918 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 485 ttctttctcagccatttcct 504 |||||||||||||||||||| Sbjct: 46323 ttctttctcagccatttcct 46342
>gb|AF007544.1|AF007544 Homo sapiens prostate-specific membrane antigen (PSM) gene, complete cds Length = 93525 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 478 attcattttctttctcagcc 497 |||||||||||||||||||| Sbjct: 62405 attcattttctttctcagcc 62424
>dbj|AP003122.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-313I2, complete sequence Length = 137888 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 478 attcattttctttctcagcc 497 |||||||||||||||||||| Sbjct: 48447 attcattttctttctcagcc 48466
>gb|AC116720.16| Mus musculus chromosome 3, clone RP23-223N19, complete sequence Length = 203748 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 482 attttctttctcagccattt 501 |||||||||||||||||||| Sbjct: 54894 attttctttctcagccattt 54875
>gb|AC174598.2| Mus musculus BAC clone RP24-234D9 from chromosome 12, complete sequence Length = 199237 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 atgatggaaatggactaacc 279 |||||||||||||||||||| Sbjct: 154305 atgatggaaatggactaacc 154286
>emb|AL356802.5|CNS05TDK Human chromosome 14 DNA sequence BAC C-2137E9 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 137883 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 485 ttctttctcagccatttcct 504 |||||||||||||||||||| Sbjct: 36082 ttctttctcagccatttcct 36063
>gb|M90639.1|CRECPCABPA Chlamydomonas eugametos chlorophyll a-binding protein (psbC) gene, complete cds Length = 3230 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 334 ctcagctgtaatcttataac 353 |||||||||||||||||||| Sbjct: 794 ctcagctgtaatcttataac 813 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8,431,870 Number of Sequences: 3902068 Number of extensions: 8431870 Number of successful extensions: 220383 Number of sequences better than 10.0: 66 Number of HSP's better than 10.0 without gapping: 67 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 220050 Number of HSP's gapped (non-prelim): 330 length of query: 638 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 615 effective length of database: 17,143,297,704 effective search space: 10543128087960 effective search space used: 10543128087960 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
