ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5o24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_548160.2| PREDICTED: Canis familiaris similar to GPR158-l... 44 0.083
2gb|AE001369.1| Plasmodium falciparum 3D7 chromosome 2 section 6 ... 38 5.1
3gb|AC134243.3| Mus musculus BAC clone RP24-90E15 from chromosome... 38 5.1
4emb|AL845448.3| Mouse DNA sequence from clone RP23-130M24 on chr... 38 5.1
5emb|AL807742.7| Human DNA sequence from clone RP11-274G22 on chr... 38 5.1
6dbj|AP001686.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 38 5.1
7emb|AL592187.17| Mouse DNA sequence from clone RP23-188D8 on chr... 38 5.1
8dbj|AP001255.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21... 38 5.1

>ref|XM_548160.2| PREDICTED: Canis familiaris similar to GPR158-like 1 (LOC491040),
           mRNA
          Length = 7140

 Score = 44.1 bits (22), Expect = 0.083
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 84  aggctgctnatttcctcaacatgct 108
           |||||||| ||||||||||||||||
Sbjct: 311 aggctgctaatttcctcaacatgct 335



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>gb|AE001369.1| Plasmodium falciparum 3D7 chromosome 2 section 6 of 73 of the
            complete sequence
          Length = 14433

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 32   tcaatttaataaaactgag 50
            |||||||||||||||||||
Sbjct: 8623 tcaatttaataaaactgag 8605



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>gb|AC134243.3| Mus musculus BAC clone RP24-90E15 from chromosome 17, complete sequence
          Length = 193151

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 4     gaagtagtttttattctgcaaag 26
             |||||||||||||||||| ||||
Sbjct: 70679 gaagtagtttttattctgtaaag 70657



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>emb|AL845448.3| Mouse DNA sequence from clone RP23-130M24 on chromosome X, complete
             sequence
          Length = 107805

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 95    ttcctcaacatgcttttca 113
             |||||||||||||||||||
Sbjct: 33860 ttcctcaacatgcttttca 33842



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>emb|AL807742.7| Human DNA sequence from clone RP11-274G22 on chromosome X, complete
              sequence
          Length = 172919

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 93     atttcctcaacatgctttt 111
              |||||||||||||||||||
Sbjct: 169920 atttcctcaacatgctttt 169938



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>dbj|AP001686.1| Homo sapiens genomic DNA, chromosome 21q, section 30/105
          Length = 340000

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 6      agtagtttttattctgcaa 24
              |||||||||||||||||||
Sbjct: 276406 agtagtttttattctgcaa 276424



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>emb|AL592187.17| Mouse DNA sequence from clone RP23-188D8 on chromosome 15, complete
              sequence
          Length = 181096

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 13     tttattctgcaaagnagcctca 34
              |||||||||||||| |||||||
Sbjct: 146598 tttattctgcaaagaagcctca 146577



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>dbj|AP001255.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B725F18,
             LL56-APP region, complete sequence
          Length = 83921

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 6     agtagtttttattctgcaa 24
             |||||||||||||||||||
Sbjct: 46284 agtagtttttattctgcaa 46302


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,101,044
Number of Sequences: 3902068
Number of extensions: 1101044
Number of successful extensions: 73558
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73546
Number of HSP's gapped (non-prelim): 12
length of query: 113
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 92
effective length of database: 17,151,101,840
effective search space: 1577901369280
effective search space used: 1577901369280
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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