Clone Information

BLAST Search Result

Clone Name	rbags6d20
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	VTI13_ARATH (Q9LVP9) Vesicle transport v-SNARE 13 (AtVTI13) (Ves...	167	3e-41
2	VTI11_ARATH (Q9SEL6) Vesicle transport v-SNARE 11 (AtVTI11) (Ves...	164	2e-40
3	VTI12_ARATH (Q9SEL5) Vesicle transport v-SNARE 12 (AtVTI12) (Ves...	154	2e-37
4	VTI1_SCHPO (P78768) Vesicle transport v-SNARE protein vti1	82	9e-16
5	VTI1_YEAST (Q04338) t-SNARE VTI1 (Qb-SNARE VTI1) (Vesicle transp...	75	1e-13
6	VTI1B_MOUSE (O88384) Vesicle transport through interaction with ...	69	1e-11
7	VTI1A_MOUSE (O89116) Vesicle transport through interaction with ...	68	2e-11
8	VTI1B_HUMAN (Q9UEU0) Vesicle transport through interaction with ...	67	5e-11
9	VTI1A_RAT (Q9JI51) Vesicle transport through interaction with t-...	62	1e-09
10	VTI1A_HUMAN (Q96AJ9) Vesicle transport through interaction with ...	58	2e-08
11	MEM11_ARATH (Q9SJL6) Membrin 11 (AtMEMB11) (Golgi SNAP receptor ...	45	2e-04
12	MEM12_ARATH (Q9FK28) Membrin 12 (AtMEMB12) (Golgi SNAP receptor ...	44	3e-04
13	GOSR2_DROME (Q9VRL2) Probable Golgi SNAP receptor complex member 2	40	0.006
14	SY111_ARATH (Q42374) Syntaxin-related protein KNOLLE (Syntaxin-1...	37	0.032
15	GOSR1_RAT (Q62931) Golgi SNAP receptor complex member 1 (28 kDa ...	37	0.055
16	GOSR1_MOUSE (O88630) Golgi SNAP receptor complex member 1 (28 kD...	37	0.055
17	GOSR1_HUMAN (O95249) Golgi SNAP receptor complex member 1 (28 kD...	37	0.055
18	GOSR1_CRIGR (O08522) Golgi SNAP receptor complex member 1 (28 kD...	37	0.055
19	GOSR1_PONPY (Q5RBL6) Golgi SNAP receptor complex member 1	37	0.055
20	SPTA1_MOUSE (P08032) Spectrin alpha chain, erythrocyte (Erythroi...	36	0.093
21	SY123_ARATH (Q9ZQZ8) Syntaxin-123 (AtSYP123)	34	0.35
22	SY125_ARATH (Q9SXB0) Putative syntaxin-125 (AtSYP125)	33	0.60
23	YMQ5_CAEEL (P83351) Hypothetical protein K02D10.5 on chromosome III	32	1.3
24	MCM3_MOUSE (P25206) DNA replication licensing factor MCM3 (DNA p...	31	2.3
25	KIF5A_PONPY (Q5R9K7) Kinesin heavy chain isoform 5A	31	2.3
26	TPM_ONCVO (Q25632) Tropomyosin (MOv-14) (Ov-tmy-1)	30	3.9
27	TPM_ANISI (Q9NAS5) Tropomyosin (Allergen Ani s 3)	30	3.9
28	TPMM_TRICO (P15846) Tropomyosin, muscle	30	3.9
29	SY124_ARATH (O64791) Putative syntaxin-124 (AtSYP124)	30	5.1
30	MRP2_MOUSE (Q8VI47) Canalicular multispecific organic anion tran...	30	5.1
31	YDLF_SCHPO (P87129) Hypothetical protein C3A12.15 in chromosome I	30	5.1
32	TAF1_DROME (P51123) Transcription initiation factor TFIID subuni...	30	5.1
33	MUTS_LEGPL (Q5WVP6) DNA mismatch repair protein mutS	30	6.7
34	MUTS_LEGPH (Q5ZUJ3) DNA mismatch repair protein mutS	30	6.7
35	MUTS_LEGPA (Q5X4B2) DNA mismatch repair protein mutS	30	6.7
36	KIF5A_MOUSE (P33175) Kinesin heavy chain isoform 5A (Neuronal ki...	30	6.7
37	PTPA_ENCCU (Q8SVB5) Serine/threonine-protein phosphatase 2A acti...	30	6.7
38	KIF5A_HUMAN (Q12840) Kinesin heavy chain isoform 5A (Neuronal ki...	30	6.7
39	ATPF_OCHNE (Q40609) ATP synthase B chain (EC 3.6.3.14) (ATPase s...	29	8.7
40	SYP31_ARATH (Q9FFK1) Syntaxin-31 (AtSYP31) (AtSED5)	29	8.7
41	LAMA_DROME (Q00174) Laminin alpha chain precursor	29	8.7

>VTI13_ARATH (Q9LVP9) Vesicle transport v-SNARE 13 (AtVTI13) (Vesicle transport|
           v-SNARE protein VTI13) (Vesicle soluble NSF attachment
           protein receptor 13)
          Length = 221

 Score =  167 bits (422), Expect = 3e-41
 Identities = 82/109 (75%), Positives = 95/109 (87%)
 Frame = -2

Query: 584 DTLAVSTDQRGRLMMTTERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHD 405
           DTL  S DQR RLMM+T+ L ++TDRIK+SRRT+LETEELGVSILQDLH QRQSLL AH+
Sbjct: 111 DTLTASADQRSRLMMSTDHLGRTTDRIKDSRRTILETEELGVSILQDLHGQRQSLLRAHE 170

Query: 404 TLHGVDDNVGKSKKILAAMSKRMDRNKWIIGGIISTLVVAILIILYFKL 258
           TLHGVDDNVGKSKKIL  M++RM+RNKW IG II+ LV+AI+ ILYFKL
Sbjct: 171 TLHGVDDNVGKSKKILTTMTRRMNRNKWTIGAIITVLVLAIIFILYFKL 219

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>VTI11_ARATH (Q9SEL6) Vesicle transport v-SNARE 11 (AtVTI11) (Vesicle transport|
           v-SNARE protein VTI1a) (Vesicle soluble NSF attachment
           protein receptor VTI1a) (AtVTI1a)
          Length = 221

 Score =  164 bits (414), Expect = 2e-40
 Identities = 79/109 (72%), Positives = 93/109 (85%)
 Frame = -2

Query: 584 DTLAVSTDQRGRLMMTTERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHD 405
           DT   S DQR RLMM+TERL ++TDR+K+SRRTM+ETEE+GVSILQDLH QRQSLL AH+
Sbjct: 111 DTKTASADQRARLMMSTERLGRTTDRVKDSRRTMMETEEIGVSILQDLHGQRQSLLRAHE 170

Query: 404 TLHGVDDNVGKSKKILAAMSKRMDRNKWIIGGIISTLVVAILIILYFKL 258
           TLHGVDDN+GKSKKIL  M++RM++NKW IG II  L+ AI IILYFKL
Sbjct: 171 TLHGVDDNIGKSKKILTDMTRRMNKNKWTIGAIIIALIAAIFIILYFKL 219

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>VTI12_ARATH (Q9SEL5) Vesicle transport v-SNARE 12 (AtVTI12) (Vesicle transport|
           v-SNARE protein VTI1b) (Vesicle soluble NSF attachment
           protein receptor VTI1b) (AtVTI1b)
          Length = 222

 Score =  154 bits (389), Expect = 2e-37
 Identities = 75/111 (67%), Positives = 94/111 (84%)
 Frame = -2

Query: 584 DTLAVSTDQRGRLMMTTERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHD 405
           D  AVS DQRGRL M+ ERL+QS+DRI+ESRR MLETEE+G+SI+QDL QQRQ+LLHAH+
Sbjct: 112 DLHAVSADQRGRLAMSVERLDQSSDRIRESRRLMLETEEVGISIVQDLSQQRQTLLHAHN 171

Query: 404 TLHGVDDNVGKSKKILAAMSKRMDRNKWIIGGIISTLVVAILIILYFKLAH 252
            LHGVDD + KSKK+L AMS+RM RNKWII  +I  LV+AI++I+ +KL+H
Sbjct: 172 KLHGVDDAIDKSKKVLTAMSRRMTRNKWIITSVIVALVLAIILIISYKLSH 222

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>VTI1_SCHPO (P78768) Vesicle transport v-SNARE protein vti1|
          Length = 214

 Score = 82.4 bits (202), Expect = 9e-16
 Identities = 43/101 (42%), Positives = 64/101 (63%)
 Frame = -2

Query: 563 DQRGRLMMTTERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDD 384
           DQR RL+  T RL QS+ R+ ES+R   ETE +G SIL+DLH QR  L H+ + L     
Sbjct: 112 DQRTRLLQGTNRLEQSSQRLLESQRIANETEGIGASILRDLHGQRNQLEHSLEMLGDTSG 171

Query: 383 NVGKSKKILAAMSKRMDRNKWIIGGIISTLVVAILIILYFK 261
           ++ +S + L  M++R+  N++    II+ LV+ IL++LY K
Sbjct: 172 HLDRSLRTLKTMARRLAMNRFFTTAIIAILVILILLVLYSK 212

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>VTI1_YEAST (Q04338) t-SNARE VTI1 (Qb-SNARE VTI1) (Vesicle transport v-SNARE|
           protein VTI1) (VPS10-interacting protein 1)
          Length = 216

 Score = 75.5 bits (184), Expect = 1e-13
 Identities = 41/104 (39%), Positives = 63/104 (60%)
 Frame = -2

Query: 572 VSTDQRGRLMMTTERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHG 393
           +  DQR +L+     L +S DR+K++ R   ETE +G  I+ DL  QR++L +A  TL  
Sbjct: 111 IDDDQRQQLLSNHAILQKSGDRLKDASRIANETEGIGSQIMMDLRSQRETLENARQTLFQ 170

Query: 392 VDDNVGKSKKILAAMSKRMDRNKWIIGGIISTLVVAILIILYFK 261
            D  V KS K L  M++R+  NK+I   II+ L++ IL++L+ K
Sbjct: 171 ADSYVDKSIKTLKTMTRRLVANKFISYAIIAVLILLILLVLFSK 214

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>VTI1B_MOUSE (O88384) Vesicle transport through interaction with t-SNAREs|
           homolog 1B (Vesicle transport v-SNARE protein Vti1-like
           1) (Vti1-rp1)
          Length = 232

 Score = 68.9 bits (167), Expect = 1e-11
 Identities = 34/100 (34%), Positives = 61/100 (61%)
 Frame = -2

Query: 560 QRGRLMMTTERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDDN 381
           QR  L+  TE LN++T  I+ S R   ET+++G  I+++L +QR  L      L   ++N
Sbjct: 128 QRALLLQGTESLNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNEN 187

Query: 380 VGKSKKILAAMSKRMDRNKWIIGGIISTLVVAILIILYFK 261
           + KS+KIL +MS+++  NK ++  II   +  ++ ++Y+K
Sbjct: 188 LSKSRKILRSMSRKVITNKLLLSVIILLELAILVGLVYYK 227

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>VTI1A_MOUSE (O89116) Vesicle transport through interaction with t-SNAREs|
           homolog 1A (Vesicle transport v-SNARE protein Vti1-like
           2) (Vti1-rp2)
          Length = 217

 Score = 67.8 bits (164), Expect = 2e-11
 Identities = 35/102 (34%), Positives = 62/102 (60%)
 Frame = -2

Query: 569 STDQRGRLMMTTERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGV 390
           S +QR  L+  TERL +S+ R++   +  +ETE++G  +L++L   R+ +  A D L   
Sbjct: 111 SENQRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARDRLRDA 170

Query: 389 DDNVGKSKKILAAMSKRMDRNKWIIGGIISTLVVAILIILYF 264
           D N+GKS +IL  M +R+ +N+ ++  +   +V+AIL  + F
Sbjct: 171 DANLGKSSRILTGMLRRIIQNRILLVILGIIVVIAILTAIAF 212

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>VTI1B_HUMAN (Q9UEU0) Vesicle transport through interaction with t-SNAREs|
           homolog 1B (Vesicle transport v-SNARE protein Vti1-like
           1) (Vti1-rp1)
          Length = 232

 Score = 66.6 bits (161), Expect = 5e-11
 Identities = 34/100 (34%), Positives = 59/100 (59%)
 Frame = -2

Query: 560 QRGRLMMTTERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDDN 381
           QR  L+  TE LN++T  I+ S R   ET+++G  I+++L +QR  L      L    +N
Sbjct: 128 QRAMLLQGTESLNRATQSIERSHRIATETDQIGSEIIEELGEQRDQLERTKSRLVNTSEN 187

Query: 380 VGKSKKILAAMSKRMDRNKWIIGGIISTLVVAILIILYFK 261
           + KS+KIL +MS+++  NK ++  II   +  +  ++Y+K
Sbjct: 188 LSKSRKILRSMSRKVTTNKLLLSIIILLELAILGGLVYYK 227

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>VTI1A_RAT (Q9JI51) Vesicle transport through interaction with t-SNAREs|
           homolog 1A (Vesicle transport v-SNARE protein Vti1-like
           2) (Vti1-rp2)
          Length = 224

 Score = 62.0 bits (149), Expect = 1e-09
 Identities = 31/97 (31%), Positives = 60/97 (61%)
 Frame = -2

Query: 563 DQRGRLMMTTERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDD 384
           ++R  L+  TERL +S+ R++   +  +ETE++G  +L++L   R+ +  A + L   D 
Sbjct: 120 EERAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDA 179

Query: 383 NVGKSKKILAAMSKRMDRNKWIIGGIISTLVVAILII 273
           N+GKS +IL  M +R+ +N+ ++  +I  ++V I I+
Sbjct: 180 NLGKSSRILTGMLRRIIQNRILL--VILGIIVVITIL 214

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>VTI1A_HUMAN (Q96AJ9) Vesicle transport through interaction with t-SNAREs|
           homolog 1A (Vesicle transport v-SNARE protein Vti1-like
           2) (Vti1-rp2)
          Length = 203

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 28/77 (36%), Positives = 47/77 (61%)
 Frame = -2

Query: 569 STDQRGRLMMTTERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGV 390
           S +QR  L+  TERL +S+ R++   +  +ETE++G  +L++L   R+ +  A + L   
Sbjct: 111 SENQRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARERLRET 170

Query: 389 DDNVGKSKKILAAMSKR 339
           D N+GKS +IL  M +R
Sbjct: 171 DANLGKSSRILTGMLRR 187

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>MEM11_ARATH (Q9SJL6) Membrin 11 (AtMEMB11) (Golgi SNAP receptor complex member|
           2-1) (27 kDa Golgi SNARE protein)
          Length = 225

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
 Frame = -2

Query: 584 DTLAVSTDQRGRLMMTTERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHD 405
           D L  ++ +   ++   +   Q+   +K S+R + E+   GV+IL    +QR  L  A  
Sbjct: 117 DLLGRASGEGAHILQIFDEEAQAMSSVKNSKRMLEESFSSGVAILSKYAEQRDRLKSAQR 176

Query: 404 TLHGVDDNVGKSKKILAAMSKRMDRNKWI-IGGIISTLVVAILII 273
               V + VG S  +L  + +R   + WI   G+I+TLV+  L I
Sbjct: 177 KALDVLNTVGLSNSVLRLIERRNRVDTWIKYAGMIATLVILYLFI 221

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>MEM12_ARATH (Q9FK28) Membrin 12 (AtMEMB12) (Golgi SNAP receptor complex member|
           2-2)
          Length = 219

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
 Frame = -2

Query: 584 DTLAVSTDQRGRLMMTTERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHD 405
           D L   + +   ++   +   Q  + +K S+R + ++ + GV+IL    +QR  L  A  
Sbjct: 111 DLLGRGSGEGAHILQIFDEEAQGMNSVKNSKRMLEDSFQSGVAILSKYAEQRDRLKSAQR 170

Query: 404 TLHGVDDNVGKSKKILAAMSKRMDRNKWI-IGGIISTLVVAILII 273
               V + VG S  +L  + +R   + WI   G+I+TLV+  L I
Sbjct: 171 KALDVLNTVGLSNSVLRLIERRNRVDTWIKYAGMIATLVILYLFI 215

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>GOSR2_DROME (Q9VRL2) Probable Golgi SNAP receptor complex member 2|
          Length = 216

 Score = 39.7 bits (91), Expect = 0.006
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
 Frame = -2

Query: 464 GVSILQDLHQQRQSLLHAHDTLHGVDDNVGKSKKILAAMSKRMDRNKWI-IGGIISTLVV 288
           G  IL+ L  QR +L  AH  +  +   +G S   +  + +R+  ++ I IGG++ TL++
Sbjct: 147 GSGILESLISQRMTLGGAHKRIQAIGSTLGLSNHTMKLIERRLVEDRRIFIGGVVVTLLI 206

Query: 287 AILIILYFKL 258
             LII +  L
Sbjct: 207 IALIIYFLVL 216

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>SY111_ARATH (Q42374) Syntaxin-related protein KNOLLE (Syntaxin-111) (AtSYP111)|
          Length = 310

 Score = 37.4 bits (85), Expect = 0.032
 Identities = 23/108 (21%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
 Frame = -2

Query: 581 TLAVSTDQRGRLMMTTERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSL----LH 414
           T A+    +G+++ T   +    D  KE  +++LE  ++ + +   +  Q + +     H
Sbjct: 197 TRAIQEHGKGKVLETVVEIQDRYDAAKEIEKSLLELHQVFLDMAVMVESQGEQMDEIEHH 256

Query: 413 AHDTLHGVDDNVGKSKKILAAMSKRMDRNKWIIGGIISTLVVAILIIL 270
             +  H V D   + K    A S + +  KW+  GII  L++ +++++
Sbjct: 257 VINASHYVADGANELK---TAKSHQRNSRKWMCIGIIVLLLIILIVVI 301

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>GOSR1_RAT (Q62931) Golgi SNAP receptor complex member 1 (28 kDa Golgi SNARE|
           protein) (28 kDa cis-Golgi SNARE p28) (GOS-28)
          Length = 250

 Score = 36.6 bits (83), Expect = 0.055
 Identities = 21/90 (23%), Positives = 45/90 (50%)
 Frame = -2

Query: 536 TERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDDNVGKSKKIL 357
           TE   +  D ++ S R + ET  + ++  +++  QR  L   H  ++ + +       ++
Sbjct: 160 TELFLKEHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLI 219

Query: 356 AAMSKRMDRNKWIIGGIISTLVVAILIILY 267
             ++ R  R+  I+GG+I   +  IL++LY
Sbjct: 220 QRINLRKRRDSLILGGVIG--ICTILLLLY 247

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>GOSR1_MOUSE (O88630) Golgi SNAP receptor complex member 1 (28 kDa Golgi SNARE|
           protein) (28 kDa cis-Golgi SNARE p28) (GOS-28)
          Length = 250

 Score = 36.6 bits (83), Expect = 0.055
 Identities = 21/90 (23%), Positives = 45/90 (50%)
 Frame = -2

Query: 536 TERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDDNVGKSKKIL 357
           TE   +  D ++ S R + ET  + ++  +++  QR  L   H  ++ + +       ++
Sbjct: 160 TELFLKEHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLI 219

Query: 356 AAMSKRMDRNKWIIGGIISTLVVAILIILY 267
             ++ R  R+  I+GG+I   +  IL++LY
Sbjct: 220 QRINLRKRRDSLILGGVIG--ICTILLLLY 247

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>GOSR1_HUMAN (O95249) Golgi SNAP receptor complex member 1 (28 kDa Golgi SNARE|
           protein) (28 kDa cis-Golgi SNARE p28) (GOS-28)
          Length = 250

 Score = 36.6 bits (83), Expect = 0.055
 Identities = 21/90 (23%), Positives = 45/90 (50%)
 Frame = -2

Query: 536 TERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDDNVGKSKKIL 357
           TE   +  D ++ S R + ET  + ++  +++  QR  L   H  ++ + +       ++
Sbjct: 160 TELFLKEHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLI 219

Query: 356 AAMSKRMDRNKWIIGGIISTLVVAILIILY 267
             ++ R  R+  I+GG+I   +  IL++LY
Sbjct: 220 QRINLRKRRDSLILGGVIG--ICTILLLLY 247

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>GOSR1_CRIGR (O08522) Golgi SNAP receptor complex member 1 (28 kDa Golgi SNARE|
           protein) (28 kDa cis-Golgi SNARE p28) (GOS-28)
          Length = 250

 Score = 36.6 bits (83), Expect = 0.055
 Identities = 21/90 (23%), Positives = 45/90 (50%)
 Frame = -2

Query: 536 TERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDDNVGKSKKIL 357
           TE   +  D ++ S R + ET  + ++  +++  QR  L   H  ++ + +       ++
Sbjct: 160 TELFLKEHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLI 219

Query: 356 AAMSKRMDRNKWIIGGIISTLVVAILIILY 267
             ++ R  R+  I+GG+I   +  IL++LY
Sbjct: 220 QRINLRKRRDSLILGGVIG--ICTILLLLY 247

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>GOSR1_PONPY (Q5RBL6) Golgi SNAP receptor complex member 1|
          Length = 248

 Score = 36.6 bits (83), Expect = 0.055
 Identities = 21/90 (23%), Positives = 45/90 (50%)
 Frame = -2

Query: 536 TERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDDNVGKSKKIL 357
           TE   +  D ++ S R + ET  + ++  +++  QR  L   H  ++ + +       ++
Sbjct: 158 TELFLKEHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLI 217

Query: 356 AAMSKRMDRNKWIIGGIISTLVVAILIILY 267
             ++ R  R+  I+GG+I   +  IL++LY
Sbjct: 218 QRINLRKRRDSLILGGVIG--ICTILLLLY 245

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>SPTA1_MOUSE (P08032) Spectrin alpha chain, erythrocyte (Erythroid alpha-spectrin)|
          Length = 2415

 Score = 35.8 bits (81), Expect = 0.093
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
 Frame = -2

Query: 449  QDLHQQRQSLLHAHDTLHGV----DDNVGKSKKILAAMSKRMDRNKWI--IGGIIST 297
            +DL +QR  L  A DTL G+     +++ ++ K    +SK  D   WI  IGG+IS+
Sbjct: 1256 EDLQKQRTELNEAWDTLQGLTSDRKESLNEAHKFFLFLSKASDLENWIKTIGGVISS 1312

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>SY123_ARATH (Q9ZQZ8) Syntaxin-123 (AtSYP123)|
          Length = 305

 Score = 33.9 bits (76), Expect = 0.35
 Identities = 24/109 (22%), Positives = 48/109 (44%), Gaps = 8/109 (7%)
 Frame = -2

Query: 575 AVSTDQRGRLMMTTERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLH 396
           A+    RG++M T   + +  D +KE  R++LE  ++ + +   +  Q        + L+
Sbjct: 193 AIQEQGRGQVMDTLSEIQERHDTVKEIERSLLELHQVFLDMAALVEAQ-------GNMLN 245

Query: 395 GVDDNVGKSKKIL--------AAMSKRMDRNKWIIGGIISTLVVAILII 273
            ++ NV K+   +         A   + +  KW     I  +VV I+I+
Sbjct: 246 DIESNVSKASSFVMRGTDQLHGAKVLQRNNRKWACIATILAIVVVIVIL 294

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>SY125_ARATH (Q9SXB0) Putative syntaxin-125 (AtSYP125)|
          Length = 298

 Score = 33.1 bits (74), Expect = 0.60
 Identities = 21/103 (20%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
 Frame = -2

Query: 575 AVSTDQRGRLMMTTERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLH 396
           A+    RG+++ T   + +  D +KE  + +LE  ++ + +   +  Q Q L +    + 
Sbjct: 185 AIQEQGRGQILDTISEIQERHDAVKEIEKNLLELHQVFLDMAALVEAQGQQLNNIESHVA 244

Query: 395 GVDDNVGK-SKKILAAMSKRMDRNKWIIGGIISTLVVAILIIL 270
                V + + ++  A   +    KW    II  +V+ IL+++
Sbjct: 245 KASSFVRRGTDQLQDAREYQKSSRKWTCYAIILFIVIFILLLI 287

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>YMQ5_CAEEL (P83351) Hypothetical protein K02D10.5 on chromosome III|
          Length = 277

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = -2

Query: 527 LNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAH---DTLHGVDDNVGKSKKIL 357
           L +S D  + SRR +  +E++G S  Q L +QR+ L +     D +H       ++   L
Sbjct: 47  LQESLDSTERSRRHLENSEKIGTSTAQQLLEQREKLENTEKNLDEIHRTTQMTQRNLNSL 106

Query: 356 AAMSKRMDRNKW 321
            +    M +NK+
Sbjct: 107 KSFFGGMFKNKF 118

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>MCM3_MOUSE (P25206) DNA replication licensing factor MCM3 (DNA polymerase|
           alpha holoenzyme-associated protein P1) (P1-MCM3)
          Length = 812

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 18/79 (22%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
 Frame = -2

Query: 536 TERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDDNVGKSKKIL 357
           ++++  S  R+K  +  +LE       + Q+ H+Q   +LH  ++++   +    S++I 
Sbjct: 738 SQKVELSEPRLKAFKAALLE-------VFQEAHEQSVGMLHLTESINRNREEPFSSEEIQ 790

Query: 356 AAMSKRMDRNKWIIG-GII 303
           A +S+  D N+ ++  GI+
Sbjct: 791 ACLSRMQDDNQVMVSEGIV 809

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>KIF5A_PONPY (Q5R9K7) Kinesin heavy chain isoform 5A|
          Length = 1032

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 19/64 (29%), Positives = 33/64 (51%)
 Frame = -2

Query: 533 ERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDDNVGKSKKILA 354
           + +NQ +  I++ ++ ML+ EEL VS   D  + +Q L H         D V   K++L 
Sbjct: 433 DEINQQSQLIEKLKQQMLDQEELLVSTRGDNEKVQQELSHLQSENDAAKDEV---KEVLQ 489

Query: 353 AMSK 342
           A+ +
Sbjct: 490 ALEE 493

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>TPM_ONCVO (Q25632) Tropomyosin (MOv-14) (Ov-tmy-1)|
          Length = 284

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 16/72 (22%), Positives = 41/72 (56%)
 Frame = -2

Query: 551 RLMMTTERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDDNVGK 372
           ++   TE+L +  + ++++++ M++TE        DL + ++ L  A+  L   +  V +
Sbjct: 28  KVRQMTEKLERIEEELRDTQKKMMQTE-------NDLVKAQEDLSVANTNLEDKEKKVQE 80

Query: 371 SKKILAAMSKRM 336
           ++  +AA+++RM
Sbjct: 81  AEAEVAALNRRM 92

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>TPM_ANISI (Q9NAS5) Tropomyosin (Allergen Ani s 3)|
          Length = 284

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 15/72 (20%), Positives = 41/72 (56%)
 Frame = -2

Query: 551 RLMMTTERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDDNVGK 372
           ++   T++L +  + ++++++ M++TE        DL + ++ L  A+  L   +  V +
Sbjct: 28  KVRQMTDKLERIEEELRDTQKKMMQTE-------NDLDKAQEDLSTANSNLEEKEKKVQE 80

Query: 371 SKKILAAMSKRM 336
           ++  +AA+++RM
Sbjct: 81  AEAEVAALNRRM 92

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>TPMM_TRICO (P15846) Tropomyosin, muscle|
          Length = 284

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 16/72 (22%), Positives = 40/72 (55%)
 Frame = -2

Query: 551 RLMMTTERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDDNVGK 372
           ++   TE+L +  + ++++++ M++TE        DL + ++ L  A   L   +  V +
Sbjct: 28  KVRQITEKLERVEEELRDTQKKMMQTE-------NDLDKAQEDLAAATSQLEEKEKKVQE 80

Query: 371 SKKILAAMSKRM 336
           ++  +AA+++RM
Sbjct: 81  AEAEVAALNRRM 92

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>SY124_ARATH (O64791) Putative syntaxin-124 (AtSYP124)|
          Length = 303

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 19/103 (18%), Positives = 45/103 (43%), Gaps = 1/103 (0%)
 Frame = -2

Query: 575 AVSTDQRGRLMMTTERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLH 396
           A+    RG+++ T   + +  D +KE  + ++E  ++ + +   +  Q Q L      + 
Sbjct: 190 AIQEQGRGQILDTISEIQERHDAVKEIEKNLIELHQVFLDMAALVESQGQQLNDIESHVS 249

Query: 395 GVDDNVGK-SKKILAAMSKRMDRNKWIIGGIISTLVVAILIIL 270
                V + + ++  A   +    KW    I+  +VV  L+++
Sbjct: 250 KASSFVRRGTDQLQDAREYQKSSRKWTCYAILLFIVVFALLLI 292

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>MRP2_MOUSE (Q8VI47) Canalicular multispecific organic anion transporter 1|
           (ATP-binding cassette sub-family C member 2)
          Length = 1543

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 18/103 (17%)
 Frame = -2

Query: 506 IKESRRTMLETEELGVSILQDLHQQRQSLLHA--------HDTLHGVDDNVGKSKKILAA 351
           I+E+ +    T +    + +DL + RQ+L             T HG+     +S+ +L  
Sbjct: 228 IEENLKAKSLTSKFKTIMTKDLQKARQALQRRLKKSQQSPEGTSHGLTKKQSQSQDVLVL 287

Query: 350 MSKRMDRNK----------WIIGGIISTLVVAILIILYFKLAH 252
              +  + K          W++  +  T  V IL     KLAH
Sbjct: 288 EDSKKKKKKSEATKDFPKSWLVKALFKTFYVVILKSFILKLAH 330

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>YDLF_SCHPO (P87129) Hypothetical protein C3A12.15 in chromosome I|
          Length = 756

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
 Frame = -2

Query: 572 VSTDQRGRLMMT-TERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLH 396
           ++ D  G L ++ +ERL +S  ++  +++T  + +      + DL+    SLL    TL 
Sbjct: 33  ITYDDLGSLRLSLSERLQESVKKLDANKKTYEDAKLSMGEKMDDLNSSIVSLLQELSTLQ 92

Query: 395 GVDDNVGKSKKILAAMSKRMDRNKWIIGGIISTLV-VAILIILYFKL 258
            V +N   S   + +  K +D  K  +   ++ L  + +L+  Y KL
Sbjct: 93  SVAENTQSSIVQMTSEIKNLDFAKQNLATSMTMLKRLQMLVTAYEKL 139

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>TAF1_DROME (P51123) Transcription initiation factor TFIID subunit 1 (EC|
            2.7.11.1) (Transcription initiation factor TFIID 230 kDa
            subunit) (TAFII-230) (TAFII250) (TBP-associated factor
            230 kDa) (p230)
          Length = 2129

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = +3

Query: 153  RDNLCCPMYSGVQTTLSHNY*TPTVCGTYLAGSVSELKVEYDE 281
            R N  CP+YSG+Q++LS +   P++   +   S  E+ ++ D+
Sbjct: 1358 RTNKACPLYSGMQSSLSQS--NPSLADDFDEQSEKEMTMDDDD 1398

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>MUTS_LEGPL (Q5WVP6) DNA mismatch repair protein mutS|
          Length = 846

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 13/83 (15%)
 Frame = -2

Query: 503 KESRRTMLETEELGVSILQDLH--------QQRQSLLHAHDTLHGVDDNVGKS-----KK 363
           +E  RT L T +LG + +Q  +        Q      H   TL  V+  +         K
Sbjct: 449 EEKNRTGLSTLKLGYNSVQGFYIELSKAQAQNAPPHFHRKQTLKNVERYITPELKLFEDK 508

Query: 362 ILAAMSKRMDRNKWIIGGIISTL 294
           +L+A SK + R KW+   ++  +
Sbjct: 509 VLSAQSKALAREKWLYDNLLEEI 531

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>MUTS_LEGPH (Q5ZUJ3) DNA mismatch repair protein mutS|
          Length = 846

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 13/83 (15%)
 Frame = -2

Query: 503 KESRRTMLETEELGVSILQDLH--------QQRQSLLHAHDTLHGVDDNVGKS-----KK 363
           +E  RT L T +LG + +Q  +        Q      H   TL  V+  +         K
Sbjct: 449 EEKNRTGLSTLKLGYNSVQGFYIELSKAQAQNAPPHFHRKQTLKNVERYITPELKLFEDK 508

Query: 362 ILAAMSKRMDRNKWIIGGIISTL 294
           +L+A SK + R KW+   ++  +
Sbjct: 509 VLSAQSKALAREKWLYDNLLEEI 531

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>MUTS_LEGPA (Q5X4B2) DNA mismatch repair protein mutS|
          Length = 846

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 13/83 (15%)
 Frame = -2

Query: 503 KESRRTMLETEELGVSILQDLH--------QQRQSLLHAHDTLHGVDDNVGKS-----KK 363
           +E  RT L T +LG + +Q  +        Q      H   TL  V+  +         K
Sbjct: 449 EEKNRTGLSTLKLGYNSVQGFYIELSKAQAQNAPPHFHRKQTLKNVERYITPELKLFEDK 508

Query: 362 ILAAMSKRMDRNKWIIGGIISTL 294
           +L+A SK + R KW+   ++  +
Sbjct: 509 VLSAQSKALAREKWLYDNLLEEI 531

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>KIF5A_MOUSE (P33175) Kinesin heavy chain isoform 5A (Neuronal kinesin heavy|
           chain) (NKHC) (Kinesin heavy chain neuron-specific 1)
          Length = 1027

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 18/64 (28%), Positives = 33/64 (51%)
 Frame = -2

Query: 533 ERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDDNVGKSKKILA 354
           + +NQ +  I++ ++ ML+ EEL VS   D  + ++ L H         D V   K++L 
Sbjct: 433 DEINQQSQLIEKLKQQMLDQEELLVSTRGDNEKVQRELSHLQSENDAAKDEV---KEVLQ 489

Query: 353 AMSK 342
           A+ +
Sbjct: 490 ALEE 493

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>PTPA_ENCCU (Q8SVB5) Serine/threonine-protein phosphatase 2A activator (EC|
           5.2.1.8) (Peptidyl-prolyl cis-trans isomerase PTPA)
           (PPIase PTPA) (Rotamase PTPA) (Phosphotyrosyl
           phosphatase activator)
          Length = 247

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -2

Query: 95  MYSNTLVRKSVVPDHFMYVKLXLKNKSEKQK 3
           MY + ++R+SVV  HF+Y +   K++S+  K
Sbjct: 215 MYDDHVLRRSVVTQHFIYGEYLRKDRSQANK 245

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>KIF5A_HUMAN (Q12840) Kinesin heavy chain isoform 5A (Neuronal kinesin heavy|
           chain) (NKHC) (Kinesin heavy chain neuron-specific 1)
          Length = 1032

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 18/64 (28%), Positives = 33/64 (51%)
 Frame = -2

Query: 533 ERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDDNVGKSKKILA 354
           + +NQ +  I++ ++ ML+ EEL VS   D  + ++ L H         D V   K++L 
Sbjct: 433 DEINQQSQLIEKLKQQMLDQEELLVSTRGDNEKVQRELSHLQSENDAAKDEV---KEVLQ 489

Query: 353 AMSK 342
           A+ +
Sbjct: 490 ALEE 493

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>ATPF_OCHNE (Q40609) ATP synthase B chain (EC 3.6.3.14) (ATPase subunit I)|
          Length = 178

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 14/37 (37%), Positives = 25/37 (67%)
 Frame = -2

Query: 554 GRLMMTTERLNQSTDRIKESRRTMLETEELGVSILQD 444
           G +    ERL Q+T+R+KES +T LE  +L ++ +++
Sbjct: 62  GAIQEAEERLEQATERLKES-KTQLEQAQLVIASIKE 97

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>SYP31_ARATH (Q9FFK1) Syntaxin-31 (AtSYP31) (AtSED5)|
          Length = 336

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 18/91 (19%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
 Frame = -2

Query: 512 DRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLH-GVDDNVGKS-------KKIL 357
           +   +SR   L + E  ++ L  +  Q  +++     L   +DDN+ +S       +  L
Sbjct: 244 ENYSQSRAVALHSVESRITELSGIFPQLATMVTQQGELAIRIDDNMDESLVNVEGARSAL 303

Query: 356 AAMSKRMDRNKWIIGGIISTLVVAILIILYF 264
                R+  N+W++  I + +++ +++ L+F
Sbjct: 304 LQHLTRISSNRWLMMKIFAVIILFLIVFLFF 334

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>LAMA_DROME (Q00174) Laminin alpha chain precursor|
          Length = 3712

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -1

Query: 210 NCVIRLSGRRCTLDNTDCPLKFTVSPNIFKYLSCSLACHV*QHSCQEVSC 61
           NC+   +G++CTL           +   + Y  C L CH   H  Q VSC
Sbjct: 606 NCLNNFAGKQCTL----------CTAGYYSYPDC-LPCHCDSHGSQGVSC 644


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,909,839
Number of Sequences: 219361
Number of extensions: 1593166
Number of successful extensions: 4473
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 4324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4472
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5044307840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result