ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags6d18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY106682.1| Zea mays PCO080186 mRNA sequence 359 7e-96
2ref|NM_192690.1| Oryza sativa (japonica cultivar-group), predic... 303 4e-79
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 147 5e-32
4dbj|AP003303.4| Oryza sativa (japonica cultivar-group) genomic D... 147 5e-32
5ref|NM_101368.2| Arabidopsis thaliana unknown protein AT1G14990 ... 44 0.53
6gb|BT024571.1| Arabidopsis thaliana At1g14990 mRNA, complete cds 44 0.53
7dbj|AK118902.1| Arabidopsis thaliana At1g14990 mRNA for unknown ... 44 0.53
8emb|CR382121.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 42 2.1
9gb|AC126176.5| Homo sapiens 12 BAC RP11-553C19 (Roswell Park Can... 42 2.1
10gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 42 2.1
11ref|NM_210225.1| Eremothecium gossypii AER011Cp (AER011C), mRNA 42 2.1
12emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 42 2.1
13gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 8.3
14gb|AC147822.2| Xenopus tropicalis clone CH216-123D2, complete se... 40 8.3
15gb|AC154278.2| Mus musculus BAC clone RP24-269E24 from chromosom... 40 8.3
16gb|DQ061922.1| Uncultured Russulaceae isolate IT7B-ECM clone 2 i... 40 8.3
17gb|DQ061920.1| Uncultured Russulaceae isolate IT7B-ECM clone 1 i... 40 8.3
18gb|DQ061919.1| Uncultured Russulaceae isolate IT7B-ECM clone 2 i... 40 8.3
19gb|DQ061893.1| Uncultured Russulaceae isolate IT7B-16 internal t... 40 8.3
20gb|DQ061892.1| Uncultured Russulaceae isolate IT7B-1 internal tr... 40 8.3
21emb|AL160166.10| Human DNA sequence from clone RP11-159N19 on ch... 40 8.3
22emb|AL049732.11|HSDA14C6 Human DNA sequence from clone RP6-14C6 ... 40 8.3
23gb|AC022535.6| Homo sapiens chromosome 10 clone RP11-34C15, comp... 40 8.3
24gb|AC091921.3| Homo sapiens chromosome 5 clone RP11-256N5, compl... 40 8.3
25ref|XM_691127.1| PREDICTED: Danio rerio similar to erythroblast ... 40 8.3
26ref|XM_682614.1| PREDICTED: Danio rerio similar to erythroblast ... 40 8.3
27dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
28dbj|AP004736.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
29emb|CT025522.17| Mouse DNA sequence from clone RP23-332L23 on ch... 40 8.3
30gb|AY876913.1| Human enterovirus Hangzhou13-02, complete genome 40 8.3
31gb|AY876912.1| Human enterovirus Ningbo3-02, complete genome 40 8.3
32gb|U10555.1|YSCH9780 Saccharomyces cerevisiae chromosome VIII co... 40 8.3
33dbj|AP008982.1| Triticum aestivum mitochondrial DNA, complete ge... 40 8.3 
>gb|AY106682.1| Zea mays PCO080186 mRNA sequence
          Length = 894

 Score =  359 bits (181), Expect = 7e-96
 Identities = 331/381 (86%)
 Strand = Plus / Minus

                                                                       
Query: 180 cctgcagttaaccacttccatcgagctgtccatgggatagaacgtgtgacatgtattgag 239
           |||||| |||||| |||||||||||||| |||||||| |||| ||||| ||  |||||||
Sbjct: 681 cctgcatttaaccgcttccatcgagctgcccatgggagagaaggtgtgccagatattgag 622

                                                                       
Query: 240 catggtaagcatacggtggtttgccttgccggtcaaaatgctttgccatgatggagaatt 299
           ||||||| ||||| |||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct: 621 catggtaggcatatggtggtttcccttgccggtcaaaatgttttgccatgatggagaact 562

                                                                       
Query: 300 ctattggaccccagtcgtctatttcaaaacaattacccaatgcggccttgtaaagctttg 359
           ||||||| ||||| || |||| |||||||||||| |||||||| ||||||||||||||||
Sbjct: 561 ctattgggccccattcatctacttcaaaacaattgcccaatgcagccttgtaaagctttg 502

                                                                       
Query: 360 cagtgtcagtgagtaactcagtaccagaagggtaggcggcataatactgatcagccctcg 419
           |||||||||| ||||  |||||||||| |||||||| || ||||||||| |||||||| |
Sbjct: 501 cagtgtcagttagtagttcagtaccagcagggtaggaggaataatactggtcagcccttg 442

                                                                       
Query: 420 aaataccagcccttgtcgtattgcttgtgtaagcataggtaacgagggtagtgaatgaat 479
           | || |||||||||||||||||||||||||||||||| |||| ||||| ||||||  | |
Sbjct: 441 acatcccagcccttgtcgtattgcttgtgtaagcataagtaatgagggaagtgaagcagt 382

                                                                       
Query: 480 agaatccagcataagaagccagccgcctaaacttctgaatctttaagacatccttgcaca 539
           ||||||||||||| ||  |||  |||| ||||||||| ||||| || || ||||| ||| 
Sbjct: 381 agaatccagcatatgacaccatacgccgaaacttctggatcttcaaaacctccttacact 322

                                
Query: 540 gatacaaaatatccatctcac 560
           |||| |  |||||||||||||
Sbjct: 321 gataaaggatatccatctcac 301
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>ref|NM_192690.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 369

 Score =  303 bits (153), Expect = 4e-79
 Identities = 312/365 (85%)
 Strand = Plus / Minus

                                                                       
Query: 191 ccacttccatcgagctgtccatgggatagaacgtgtgacatgtattgagcatggtaagca 250
           ||||||||||||||||| |||||||| |||| ||||| ||||||||| ||||| || |||
Sbjct: 365 ccacttccatcgagctgcccatgggagagaaggtgtgccatgtattgtgcatgatacgca 306

                                                                       
Query: 251 tacggtggtttgccttgccggtcaaaatgctttgccatgatggagaattctattggaccc 310
           || ||||||||||||||||| |||||||| ||||||||||| ||||| ||||||||||||
Sbjct: 305 tatggtggtttgccttgccgatcaaaatgttttgccatgatagagaactctattggaccc 246

                                                                       
Query: 311 cagtcgtctatttcaaaacaattacccaatgcggccttgtaaagctttgcagtgtcagtg 370
           ||||| |||||||| ||||||||||| ||||| |||||||||||||||||||||||||| 
Sbjct: 245 cagtcatctatttcgaaacaattacctaatgcagccttgtaaagctttgcagtgtcagtt 186

                                                                       
Query: 371 agtaactcagtaccagaagggtaggcggcataatactgatcagccctcgaaataccagcc 430
           |||| ||| |||||||  || || | ||||||| | || ||  |||| ||||| ||||||
Sbjct: 185 agtagctccgtaccagcgggatatgaggcataaaattggtcgcccctagaaatgccagcc 126

                                                                       
Query: 431 cttgtcgtattgcttgtgtaagcataggtaacgagggtagtgaatgaatagaatccagca 490
           |||||||||||||| |||||||||||||| |  |||| ||||||  | ||||||||||||
Sbjct: 125 cttgtcgtattgctcgtgtaagcataggtcattagggcagtgaagcagtagaatccagca 66

                                                                       
Query: 491 taagaagccagccgcctaaacttctgaatctttaagacatccttgcacagatacaaaata 550
           || || |||   ||||  |||||||| ||||||||||  ||||| ||  | |||||||||
Sbjct: 65  taggacgccgtacgccggaacttctggatctttaagaactccttacattggtacaaaata 6

                
Query: 551 tccat 555
           |||||
Sbjct: 5   tccat 1
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  147 bits (74), Expect = 5e-32
 Identities = 107/118 (90%)
 Strand = Plus / Minus

                                                                            
Query: 239      gcatggtaagcatacggtggtttgccttgccggtcaaaatgctttgccatgatggagaat 298
                ||||| || ||||| ||||||||||||||||| |||||||| ||||||||||| ||||| 
Sbjct: 23879929 gcatgatacgcatatggtggtttgccttgccgatcaaaatgttttgccatgatagagaac 23879870

                                                                          
Query: 299      tctattggaccccagtcgtctatttcaaaacaattacccaatgcggccttgtaaagct 356
                ||||||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||
Sbjct: 23879869 tctattggaccccagtcatctatttcgaaacaattacctaatgcagccttgtaaagct 23879812



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                        
Query: 182      tgcagttaaccacttccatcgagctgtccatgggatagaacgtgtgacatgtattg 237
                |||||||| ||||||||||||||||| |||||||| |||| ||||| |||||||||
Sbjct: 23880149 tgcagttatccacttccatcgagctgcccatgggagagaaggtgtgccatgtattg 23880094



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 99/121 (81%)
 Strand = Plus / Minus

                                                                            
Query: 436      cgtattgcttgtgtaagcataggtaacgagggtagtgaatgaatagaatccagcataaga 495
                ||||||||| |||||||||||||| |  |||| ||||||  | |||||||||||||| ||
Sbjct: 23879500 cgtattgctcgtgtaagcataggtcattagggcagtgaagcagtagaatccagcatagga 23879441

                                                                            
Query: 496      agccagccgcctaaacttctgaatctttaagacatccttgcacagatacaaaatatccat 555
                 |||   ||||  |||||||| ||||||||||  ||||| ||  | ||||||||||||||
Sbjct: 23879440 cgccgtacgccggaacttctggatctttaagaactccttacattggtacaaaatatccat 23879381

                 
Query: 556      c 556
                |
Sbjct: 23879380 c 23879380



 Score = 44.1 bits (22), Expect = 0.53
 Identities = 67/82 (81%)
 Strand = Plus / Minus

                                                                            
Query: 355      ctttgcagtgtcagtgagtaactcagtaccagaagggtaggcggcataatactgatcagc 414
                ||||||||||||||| |||| ||| |||||||  || || | ||||||| | || ||  |
Sbjct: 23879673 ctttgcagtgtcagttagtagctccgtaccagcgggatatgaggcataaaattggtcgcc 23879614

                                      
Query: 415      cctcgaaataccagcccttgtc 436
                ||| ||||| ||||||||||||
Sbjct: 23879613 cctagaaatgccagcccttgtc 23879592
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>dbj|AP003303.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0704D04
          Length = 147638

 Score =  147 bits (74), Expect = 5e-32
 Identities = 107/118 (90%)
 Strand = Plus / Minus

                                                                         
Query: 239   gcatggtaagcatacggtggtttgccttgccggtcaaaatgctttgccatgatggagaat 298
             ||||| || ||||| ||||||||||||||||| |||||||| ||||||||||| ||||| 
Sbjct: 26333 gcatgatacgcatatggtggtttgccttgccgatcaaaatgttttgccatgatagagaac 26274

                                                                       
Query: 299   tctattggaccccagtcgtctatttcaaaacaattacccaatgcggccttgtaaagct 356
             ||||||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||
Sbjct: 26273 tctattggaccccagtcatctatttcgaaacaattacctaatgcagccttgtaaagct 26216



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                     
Query: 182   tgcagttaaccacttccatcgagctgtccatgggatagaacgtgtgacatgtattg 237
             |||||||| ||||||||||||||||| |||||||| |||| ||||| |||||||||
Sbjct: 26553 tgcagttatccacttccatcgagctgcccatgggagagaaggtgtgccatgtattg 26498



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 99/121 (81%)
 Strand = Plus / Minus

                                                                         
Query: 436   cgtattgcttgtgtaagcataggtaacgagggtagtgaatgaatagaatccagcataaga 495
             ||||||||| |||||||||||||| |  |||| ||||||  | |||||||||||||| ||
Sbjct: 25904 cgtattgctcgtgtaagcataggtcattagggcagtgaagcagtagaatccagcatagga 25845

                                                                         
Query: 496   agccagccgcctaaacttctgaatctttaagacatccttgcacagatacaaaatatccat 555
              |||   ||||  |||||||| ||||||||||  ||||| ||  | ||||||||||||||
Sbjct: 25844 cgccgtacgccggaacttctggatctttaagaactccttacattggtacaaaatatccat 25785

              
Query: 556   c 556
             |
Sbjct: 25784 c 25784



 Score = 44.1 bits (22), Expect = 0.53
 Identities = 67/82 (81%)
 Strand = Plus / Minus

                                                                         
Query: 355   ctttgcagtgtcagtgagtaactcagtaccagaagggtaggcggcataatactgatcagc 414
             ||||||||||||||| |||| ||| |||||||  || || | ||||||| | || ||  |
Sbjct: 26077 ctttgcagtgtcagttagtagctccgtaccagcgggatatgaggcataaaattggtcgcc 26018

                                   
Query: 415   cctcgaaataccagcccttgtc 436
             ||| ||||| ||||||||||||
Sbjct: 26017 cctagaaatgccagcccttgtc 25996
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>ref|NM_101368.2| Arabidopsis thaliana unknown protein AT1G14990 mRNA, complete cds
          Length = 663

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 88/110 (80%)
 Strand = Plus / Minus

                                                                       
Query: 191 ccacttccatcgagctgtccatgggatagaacgtgtgacatgtattgagcatggtaagca 250
           |||||||||||||| || || || ||||||| ||| | ||||||||| |  |||||| | 
Sbjct: 457 ccacttccatcgagttggccttgagatagaaggtgagccatgtattgggagtggtaaacg 398

                                                             
Query: 251 tacggtggtttgccttgccggtcaaaatgctttgccatgatggagaattc 300
           || || | ||| || || || ||||||||||| ||||| ||| |||||||
Sbjct: 397 tatggagattttccctggcgatcaaaatgcttagccattatgcagaattc 348
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>gb|BT024571.1| Arabidopsis thaliana At1g14990 mRNA, complete cds
          Length = 369

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 88/110 (80%)
 Strand = Plus / Minus

                                                                       
Query: 191 ccacttccatcgagctgtccatgggatagaacgtgtgacatgtattgagcatggtaagca 250
           |||||||||||||| || || || ||||||| ||| | ||||||||| |  |||||| | 
Sbjct: 365 ccacttccatcgagttggccttgagatagaaggtgagccatgtattgggagtggtaaacg 306

                                                             
Query: 251 tacggtggtttgccttgccggtcaaaatgctttgccatgatggagaattc 300
           || || | ||| || || || ||||||||||| ||||| ||| |||||||
Sbjct: 305 tatggagattttccctggcgatcaaaatgcttagccattatgcagaattc 256
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>dbj|AK118902.1| Arabidopsis thaliana At1g14990 mRNA for unknown protein, complete
           cds, clone: RAFL21-24-M14
          Length = 663

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 88/110 (80%)
 Strand = Plus / Minus

                                                                       
Query: 191 ccacttccatcgagctgtccatgggatagaacgtgtgacatgtattgagcatggtaagca 250
           |||||||||||||| || || || ||||||| ||| | ||||||||| |  |||||| | 
Sbjct: 457 ccacttccatcgagttggccttgagatagaaggtgagccatgtattgggagtggtaaacg 398

                                                             
Query: 251 tacggtggtttgccttgccggtcaaaatgctttgccatgatggagaattc 300
           || || | ||| || || || ||||||||||| ||||| ||| |||||||
Sbjct: 397 tatggagattttccctggcgatcaaaatgcttagccattatgcagaattc 348
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>emb|CR382121.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome A of strain NRRL
              Y-1140 of Kluyveromyces lactis
          Length = 1062590

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 463    gagggtagtgaatgaatagaa 483
              |||||||||||||||||||||
Sbjct: 381318 gagggtagtgaatgaatagaa 381338
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>gb|AC126176.5| Homo sapiens 12 BAC RP11-553C19 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 23501

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 57    tttcaactctgtcatcgtcat 77
             |||||||||||||||||||||
Sbjct: 21457 tttcaactctgtcatcgtcat 21477
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>gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome V,
              complete sequence
          Length = 1519138

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 98     ggatttcagcgagccatctct 118
              |||||||||||||||||||||
Sbjct: 654311 ggatttcagcgagccatctct 654331
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>ref|NM_210225.1| Eremothecium gossypii AER011Cp (AER011C), mRNA
          Length = 2670

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 98   ggatttcagcgagccatctct 118
            |||||||||||||||||||||
Sbjct: 1665 ggatttcagcgagccatctct 1645
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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 411     cagccctcgaaataccagccc 431
               |||||||||||||||||||||
Sbjct: 2233671 cagccctcgaaataccagccc 2233651
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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 423    taccagcccttgtcgtattgcttg 446
              |||||||||||||| |||||||||
Sbjct: 953890 taccagcccttgtcatattgcttg 953867
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>gb|AC147822.2| Xenopus tropicalis clone CH216-123D2, complete sequence
          Length = 166377

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 84     accagcacaatttaggatttcagc 107
              ||||||||||||||||| ||||||
Sbjct: 152881 accagcacaatttaggacttcagc 152858
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>gb|AC154278.2| Mus musculus BAC clone RP24-269E24 from chromosome 16, complete
             sequence
          Length = 153579

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 10    gttttaactaataatatgtt 29
             ||||||||||||||||||||
Sbjct: 52672 gttttaactaataatatgtt 52691
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>gb|DQ061922.1| Uncultured Russulaceae isolate IT7B-ECM clone 2 internal
           transcribed spacer 1, partial sequence; 5.8S ribosomal
           RNA gene, complete sequence; and internal transcribed
           spacer 2, partial sequence
          Length = 442

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 541 atacaaaatatccatctcac 560
           ||||||||||||||||||||
Sbjct: 21  atacaaaatatccatctcac 40
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>gb|DQ061920.1| Uncultured Russulaceae isolate IT7B-ECM clone 1 internal
           transcribed spacer 1, partial sequence; 5.8S ribosomal
           RNA gene, complete sequence; and internal transcribed
           spacer 2, partial sequence
          Length = 761

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 541 atacaaaatatccatctcac 560
           ||||||||||||||||||||
Sbjct: 141 atacaaaatatccatctcac 160
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>gb|DQ061919.1| Uncultured Russulaceae isolate IT7B-ECM clone 2 internal
           transcribed spacer 1, partial sequence; 5.8S ribosomal
           RNA gene, complete sequence; and internal transcribed
           spacer 2, partial sequence
          Length = 641

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 541 atacaaaatatccatctcac 560
           ||||||||||||||||||||
Sbjct: 21  atacaaaatatccatctcac 40
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>gb|DQ061893.1| Uncultured Russulaceae isolate IT7B-16 internal transcribed spacer
           1, partial sequence; 5.8S ribosomal RNA gene, complete
           sequence; and internal transcribed spacer 2, partial
           sequence
          Length = 763

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 541 atacaaaatatccatctcac 560
           ||||||||||||||||||||
Sbjct: 142 atacaaaatatccatctcac 161
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>gb|DQ061892.1| Uncultured Russulaceae isolate IT7B-1 internal transcribed spacer
           1, partial sequence; 5.8S ribosomal RNA gene, complete
           sequence; and internal transcribed spacer 2, partial
           sequence
          Length = 758

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 541 atacaaaatatccatctcac 560
           ||||||||||||||||||||
Sbjct: 141 atacaaaatatccatctcac 160
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>emb|AL160166.10| Human DNA sequence from clone RP11-159N19 on chromosome 9, complete
            sequence
          Length = 156964

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 273  caaaatgctttgccatgatg 292
            ||||||||||||||||||||
Sbjct: 3052 caaaatgctttgccatgatg 3071
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>emb|AL049732.11|HSDA14C6 Human DNA sequence from clone RP6-14C6 on chromosome Xp11.21-11.23
             Contains  the 3' end of the PFKFB1 gene for
             6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1, and
             the TRO gene for trophinin, complete sequence
          Length = 103115

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 360   cagtgtcagtgagtaactca 379
             ||||||||||||||||||||
Sbjct: 37234 cagtgtcagtgagtaactca 37215
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>gb|AC022535.6| Homo sapiens chromosome 10 clone RP11-34C15, complete sequence
          Length = 178864

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 285   ccatgatggagaattctatt 304
             ||||||||||||||||||||
Sbjct: 62880 ccatgatggagaattctatt 62861
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>gb|AC091921.3| Homo sapiens chromosome 5 clone RP11-256N5, complete sequence
          Length = 172192

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 539   agatacaaaatatccatctcacag 562
             ||||| ||||||||||||||||||
Sbjct: 76720 agatataaaatatccatctcacag 76743
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>ref|XM_691127.1| PREDICTED: Danio rerio similar to erythroblast membrane-associated
           protein (LOC567822), mRNA
          Length = 3567

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 516 gaatctttaagacatccttg 535
           ||||||||||||||||||||
Sbjct: 349 gaatctttaagacatccttg 330
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>ref|XM_682614.1| PREDICTED: Danio rerio similar to erythroblast membrane-associated
           protein (LOC559285), mRNA
          Length = 3315

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 516 gaatctttaagacatccttg 535
           ||||||||||||||||||||
Sbjct: 349 gaatctttaagacatccttg 330
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 11      ttttaactaataatatgttg 30
               ||||||||||||||||||||
Sbjct: 7374271 ttttaactaataatatgttg 7374290
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>dbj|AP004736.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0062A09
          Length = 173541

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 11     ttttaactaataatatgttg 30
              ||||||||||||||||||||
Sbjct: 108234 ttttaactaataatatgttg 108253
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>emb|CT025522.17| Mouse DNA sequence from clone RP23-332L23 on chromosome 16, complete
              sequence
          Length = 199628

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 10     gttttaactaataatatgtt 29
              ||||||||||||||||||||
Sbjct: 125706 gttttaactaataatatgtt 125687
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>gb|AY876913.1| Human enterovirus Hangzhou13-02, complete genome
          Length = 7456

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 463  gagggtagtgaatgaatagaatcc 486
            |||||||||||||||||| |||||
Sbjct: 3217 gagggtagtgaatgaatacaatcc 3240
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>gb|AY876912.1| Human enterovirus Ningbo3-02, complete genome
          Length = 7456

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 463  gagggtagtgaatgaatagaatcc 486
            |||||||||||||||||| |||||
Sbjct: 3217 gagggtagtgaatgaatacaatcc 3240
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>gb|U10555.1|YSCH9780 Saccharomyces cerevisiae chromosome VIII cosmid 9780
          Length = 24431

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 445   tgtgtaagcataggtaacga 464
             ||||||||||||||||||||
Sbjct: 18256 tgtgtaagcataggtaacga 18275
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>dbj|AP008982.1| Triticum aestivum mitochondrial DNA, complete genome
          Length = 452528

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 489    cataagaagccagccgccta 508
              ||||||||||||||||||||
Sbjct: 346413 cataagaagccagccgccta 346432


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,983,540
Number of Sequences: 3902068
Number of extensions: 4983540
Number of successful extensions: 87523
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 87390
Number of HSP's gapped (non-prelim): 127
length of query: 611
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 588
effective length of database: 17,143,297,704
effective search space: 10080259049952
effective search space used: 10080259049952
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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