| Clone Name | rbags6d17 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY107627.1| Zea mays PCO120018 mRNA sequence Length = 776 Score = 347 bits (175), Expect = 3e-92 Identities = 459/553 (83%), Gaps = 3/553 (0%) Strand = Plus / Minus Query: 123 cgcccgatcttctccaccagccgtctctcgatctccatcctcttcctcgtgagcgcggtg 182 ||||| |||||||||||||| ||||||||||||||||| ||||||||| | || |||| Sbjct: 612 cgcccaatcttctccaccaggcgtctctcgatctccattctcttcctcatcaggatggtg 553 Query: 183 tacttcttcaggagctccctgccctcctcct---cgggcgccgggaccgccagctttgcg 239 ||||||| |||||||||| | ||| ||||| || |||||||| |||||||| | | Sbjct: 552 tacttctggaggagctcccggtcctgctccttgtcgccggccgggactgccagcttcgag 493 Query: 240 cccagcgaggtcttctccaggttgcccacgtacatgcgggagatgggaacaaagcctcct 299 || || ||||||||||||||||||||| ||||| || |||||||| || |||| ||| Sbjct: 492 ccaagggaggtcttctccaggttgccctggtacaggcacgagatggggacgaagctacct 433 Query: 300 tcctccttgcacagccatccgtgggcggctctcagggctgcacccagtgaggccgaatcc 359 | | | ||||||||||| |||||||| |||||||| ||||| ||||| || |||||||| Sbjct: 432 tgcgcgttgcacagccacccgtgggcagctctcagcgctgcgcccagcgatgccgaatca 373 Query: 360 ggtctctcaactgtgaagacagggcagccaaagatttgtgcgatcaacttgaggatgctc 419 ||||||| |||||||||||||||||||| ||||| || |||| ||||||||||||| Sbjct: 372 ggtctctggactgtgaagacagggcagccgaagatctgcgcgactgacttgaggatgctt 313 Query: 420 tcgttggaggatgccccaccggttgctatgatcctcttcgggggattgggcatgccaaac 479 ||||||||||||||||| |||||||||||||||| || || || || |||||||||||| Sbjct: 312 tcgttggaggatgccccgccggttgctatgatccgtttgggagggttcggcatgccaaac 253 Query: 480 cgctcagcatgccctcgcatcgacagcatctgaccctcgacgatggcacggacctcagat 539 | ||| || || ||||||||||||||||| || ||||| | ||||||||| ||||| || Sbjct: 252 ctctcggcgtggcctcgcatcgacagcatttggccctcaatgatggcacgaacctcggac 193 Query: 540 tgtggatcaaattcttgcacctcacgctctgtcagattttcagaggaggcgtcgttgaaa 599 |||| |||| ||||| ||| |||||||| |||| || || ||| ||||||||| Sbjct: 192 ggtgggtcaagttcttccacttcacgctccaacagagcgtctgatgagacgtcgttgagg 133 Query: 600 ttctcgacaatgtaccggtgaaaaccaactggaagaggaggcaggatttcatggtctttg 659 || |||||| ||||||| || ||||| |||||||| ||||| ||||| |||||||||||| Sbjct: 132 ttttcgacagtgtaccgatggaaacccactggaagtggagggaggatctcatggtctttg 73 Query: 660 tagtagaatccta 672 ||||||||||||| Sbjct: 72 tagtagaatccta 60
>ref|XM_479289.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2185 Score = 268 bits (135), Expect = 2e-68 Identities = 366/443 (82%) Strand = Plus / Minus Query: 231 agctttgcgcccagcgaggtcttctccaggttgcccacgtacatgcgggagatgggaaca 290 |||||||| |||| ||||||||||||||||| ||| |||||||| ||||||||| || Sbjct: 1853 agctttgcacccaaggaggtcttctccaggttaccctggtacatgcaggagatggggacg 1794 Query: 291 aagcctccttcctccttgcacagccatccgtgggcggctctcagggctgcacccagtgag 350 |||| |||||||| ||||||||||| || ||||| |||||||| || || || || ||| Sbjct: 1793 aagctcccttcctcattgcacagccagccatgggcagctctcagtgccgcgccaagcgag 1734 Query: 351 gccgaatccggtctctcaactgtgaagacagggcagccaaagatttgtgcgatcaacttg 410 || ||||| ||||||| |||||| |||||||| ||||||||||| || ||||| | | | Sbjct: 1733 gcagaatcaggtctctgaactgtaaagacaggacagccaaagatctgcgcgattgagtgg 1674 Query: 411 aggatgctctcgttggaggatgccccaccggttgctatgatcctcttcgggggattgggc 470 ||||||| ||||||||||||||| ||||||||||| ||||||| ||| || || || ||| Sbjct: 1673 aggatgcgctcgttggaggatgcgccaccggttgcgatgatccgcttgggagggttaggc 1614 Query: 471 atgccaaaccgctcagcatgccctcgcatcgacagcatctgaccctcgacgatggcacgg 530 ||||| || | ||| ||||| |||||||| ||||||| ||| || |||| ||||| || Sbjct: 1613 atgccgaatctctcggcatggcctcgcattgacagcagctggccttcgattatggcgcga 1554 Query: 531 acctcagattgtggatcaaattcttgcacctcacgctctgtcagattttcagaggaggcg 590 ||||||||| ||||||||||||||| ||||||||| || |||||| | || | | | Sbjct: 1553 acctcagatggtggatcaaattcttccacctcacgttccaccagattgttggatgtgaca 1494 Query: 591 tcgttgaaattctcgacaatgtaccggtgaaaaccaactggaagaggaggcaggatttca 650 || |||| || || |||||||| || || || ||||||||||| || ||||| |||||| Sbjct: 1493 tcattgaggttttcaacaatgtatcgatggaagccaactggaagtggcggcagaatttca 1434 Query: 651 tggtctttgtagtagaatcctaa 673 ||||||||||||||||||||||| Sbjct: 1433 tggtctttgtagtagaatcctaa 1411 Score = 107 bits (54), Expect = 5e-20 Identities = 84/94 (89%) Strand = Plus / Minus Query: 116 ctacgcacgcccgatcttctccaccagccgtctctcgatctccatcctcttcctcgtgag 175 |||||| ||||| ||||||||||||||||| ||||| |||||||||||||||||| |||| Sbjct: 1971 ctacgcgcgcccaatcttctccaccagccgcctctcaatctccatcctcttcctcatgag 1912 Query: 176 cgcggtgtacttcttcaggagctccctgccctcc 209 | | |||||||||| |||||||||| || ||||| Sbjct: 1911 caccgtgtacttctccaggagctccttgtcctcc 1878
>dbj|AK070161.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023045I10, full insert sequence Length = 2185 Score = 268 bits (135), Expect = 2e-68 Identities = 366/443 (82%) Strand = Plus / Minus Query: 231 agctttgcgcccagcgaggtcttctccaggttgcccacgtacatgcgggagatgggaaca 290 |||||||| |||| ||||||||||||||||| ||| |||||||| ||||||||| || Sbjct: 1853 agctttgcacccaaggaggtcttctccaggttaccctggtacatgcaggagatggggacg 1794 Query: 291 aagcctccttcctccttgcacagccatccgtgggcggctctcagggctgcacccagtgag 350 |||| |||||||| ||||||||||| || ||||| |||||||| || || || || ||| Sbjct: 1793 aagctcccttcctcattgcacagccagccatgggcagctctcagtgccgcgccaagcgag 1734 Query: 351 gccgaatccggtctctcaactgtgaagacagggcagccaaagatttgtgcgatcaacttg 410 || ||||| ||||||| |||||| |||||||| ||||||||||| || ||||| | | | Sbjct: 1733 gcagaatcaggtctctgaactgtaaagacaggacagccaaagatctgcgcgattgagtgg 1674 Query: 411 aggatgctctcgttggaggatgccccaccggttgctatgatcctcttcgggggattgggc 470 ||||||| ||||||||||||||| ||||||||||| ||||||| ||| || || || ||| Sbjct: 1673 aggatgcgctcgttggaggatgcgccaccggttgcgatgatccgcttgggagggttaggc 1614 Query: 471 atgccaaaccgctcagcatgccctcgcatcgacagcatctgaccctcgacgatggcacgg 530 ||||| || | ||| ||||| |||||||| ||||||| ||| || |||| ||||| || Sbjct: 1613 atgccgaatctctcggcatggcctcgcattgacagcagctggccttcgattatggcgcga 1554 Query: 531 acctcagattgtggatcaaattcttgcacctcacgctctgtcagattttcagaggaggcg 590 ||||||||| ||||||||||||||| ||||||||| || |||||| | || | | | Sbjct: 1553 acctcagatggtggatcaaattcttccacctcacgttccaccagattgttggatgtgaca 1494 Query: 591 tcgttgaaattctcgacaatgtaccggtgaaaaccaactggaagaggaggcaggatttca 650 || |||| || || |||||||| || || || ||||||||||| || ||||| |||||| Sbjct: 1493 tcattgaggttttcaacaatgtatcgatggaagccaactggaagtggcggcagaatttca 1434 Query: 651 tggtctttgtagtagaatcctaa 673 ||||||||||||||||||||||| Sbjct: 1433 tggtctttgtagtagaatcctaa 1411 Score = 107 bits (54), Expect = 5e-20 Identities = 84/94 (89%) Strand = Plus / Minus Query: 116 ctacgcacgcccgatcttctccaccagccgtctctcgatctccatcctcttcctcgtgag 175 |||||| ||||| ||||||||||||||||| ||||| |||||||||||||||||| |||| Sbjct: 1971 ctacgcgcgcccaatcttctccaccagccgcctctcaatctccatcctcttcctcatgag 1912 Query: 176 cgcggtgtacttcttcaggagctccctgccctcc 209 | | |||||||||| |||||||||| || ||||| Sbjct: 1911 caccgtgtacttctccaggagctccttgtcctcc 1878
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 111 bits (56), Expect = 3e-21 Identities = 125/148 (84%) Strand = Plus / Minus Query: 360 ggtctctcaactgtgaagacagggcagccaaagatttgtgcgatcaacttgaggatgctc 419 ||||||| |||||| |||||||| ||||||||||| || ||||| | | |||||||| | Sbjct: 26591176 ggtctctgaactgtaaagacaggacagccaaagatctgcgcgattgagtggaggatgcgc 26591117 Query: 420 tcgttggaggatgccccaccggttgctatgatcctcttcgggggattgggcatgccaaac 479 |||||||||||||| ||||||||||| ||||||| ||| || || || |||||||| || Sbjct: 26591116 tcgttggaggatgcgccaccggttgcgatgatccgcttgggagggttaggcatgccgaat 26591057 Query: 480 cgctcagcatgccctcgcatcgacagca 507 | ||| ||||| |||||||| ||||||| Sbjct: 26591056 ctctcggcatggcctcgcattgacagca 26591029 Score = 107 bits (54), Expect = 5e-20 Identities = 84/94 (89%) Strand = Plus / Minus Query: 116 ctacgcacgcccgatcttctccaccagccgtctctcgatctccatcctcttcctcgtgag 175 |||||| ||||| ||||||||||||||||| ||||| |||||||||||||||||| |||| Sbjct: 26591537 ctacgcgcgcccaatcttctccaccagccgcctctcaatctccatcctcttcctcatgag 26591478 Query: 176 cgcggtgtacttcttcaggagctccctgccctcc 209 | | |||||||||| |||||||||| || ||||| Sbjct: 26591477 caccgtgtacttctccaggagctccttgtcctcc 26591444 Score = 87.7 bits (44), Expect = 4e-14 Identities = 89/104 (85%) Strand = Plus / Minus Query: 231 agctttgcgcccagcgaggtcttctccaggttgcccacgtacatgcgggagatgggaaca 290 |||||||| |||| ||||||||||||||||| ||| |||||||| ||||||||| || Sbjct: 26591419 agctttgcacccaaggaggtcttctccaggttaccctggtacatgcaggagatggggacg 26591360 Query: 291 aagcctccttcctccttgcacagccatccgtgggcggctctcag 334 |||| |||||||| ||||||||||| || ||||| |||||||| Sbjct: 26591359 aagctcccttcctcattgcacagccagccatgggcagctctcag 26591316 Score = 67.9 bits (34), Expect = 4e-08 Identities = 43/46 (93%) Strand = Plus / Minus Query: 628 ctggaagaggaggcaggatttcatggtctttgtagtagaatcctaa 673 ||||||| || ||||| ||||||||||||||||||||||||||||| Sbjct: 26590742 ctggaagtggcggcagaatttcatggtctttgtagtagaatcctaa 26590697 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 531 acctcagattgtggatcaaattcttgcacctcacg 565 ||||||||| ||||||||||||||| ||||||||| Sbjct: 26590926 acctcagatggtggatcaaattcttccacctcacg 26590892
>dbj|AP005292.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1340_C08 Length = 192167 Score = 111 bits (56), Expect = 3e-21 Identities = 125/148 (84%) Strand = Plus / Minus Query: 360 ggtctctcaactgtgaagacagggcagccaaagatttgtgcgatcaacttgaggatgctc 419 ||||||| |||||| |||||||| ||||||||||| || ||||| | | |||||||| | Sbjct: 136447 ggtctctgaactgtaaagacaggacagccaaagatctgcgcgattgagtggaggatgcgc 136388 Query: 420 tcgttggaggatgccccaccggttgctatgatcctcttcgggggattgggcatgccaaac 479 |||||||||||||| ||||||||||| ||||||| ||| || || || |||||||| || Sbjct: 136387 tcgttggaggatgcgccaccggttgcgatgatccgcttgggagggttaggcatgccgaat 136328 Query: 480 cgctcagcatgccctcgcatcgacagca 507 | ||| ||||| |||||||| ||||||| Sbjct: 136327 ctctcggcatggcctcgcattgacagca 136300 Score = 107 bits (54), Expect = 5e-20 Identities = 84/94 (89%) Strand = Plus / Minus Query: 116 ctacgcacgcccgatcttctccaccagccgtctctcgatctccatcctcttcctcgtgag 175 |||||| ||||| ||||||||||||||||| ||||| |||||||||||||||||| |||| Sbjct: 136808 ctacgcgcgcccaatcttctccaccagccgcctctcaatctccatcctcttcctcatgag 136749 Query: 176 cgcggtgtacttcttcaggagctccctgccctcc 209 | | |||||||||| |||||||||| || ||||| Sbjct: 136748 caccgtgtacttctccaggagctccttgtcctcc 136715 Score = 87.7 bits (44), Expect = 4e-14 Identities = 89/104 (85%) Strand = Plus / Minus Query: 231 agctttgcgcccagcgaggtcttctccaggttgcccacgtacatgcgggagatgggaaca 290 |||||||| |||| ||||||||||||||||| ||| |||||||| ||||||||| || Sbjct: 136690 agctttgcacccaaggaggtcttctccaggttaccctggtacatgcaggagatggggacg 136631 Query: 291 aagcctccttcctccttgcacagccatccgtgggcggctctcag 334 |||| |||||||| ||||||||||| || ||||| |||||||| Sbjct: 136630 aagctcccttcctcattgcacagccagccatgggcagctctcag 136587 Score = 67.9 bits (34), Expect = 4e-08 Identities = 43/46 (93%) Strand = Plus / Minus Query: 628 ctggaagaggaggcaggatttcatggtctttgtagtagaatcctaa 673 ||||||| || ||||| ||||||||||||||||||||||||||||| Sbjct: 136013 ctggaagtggcggcagaatttcatggtctttgtagtagaatcctaa 135968 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 531 acctcagattgtggatcaaattcttgcacctcacg 565 ||||||||| ||||||||||||||| ||||||||| Sbjct: 136197 acctcagatggtggatcaaattcttccacctcacg 136163
>dbj|AP004671.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0524G08 Length = 146690 Score = 111 bits (56), Expect = 3e-21 Identities = 125/148 (84%) Strand = Plus / Minus Query: 360 ggtctctcaactgtgaagacagggcagccaaagatttgtgcgatcaacttgaggatgctc 419 ||||||| |||||| |||||||| ||||||||||| || ||||| | | |||||||| | Sbjct: 8780 ggtctctgaactgtaaagacaggacagccaaagatctgcgcgattgagtggaggatgcgc 8721 Query: 420 tcgttggaggatgccccaccggttgctatgatcctcttcgggggattgggcatgccaaac 479 |||||||||||||| ||||||||||| ||||||| ||| || || || |||||||| || Sbjct: 8720 tcgttggaggatgcgccaccggttgcgatgatccgcttgggagggttaggcatgccgaat 8661 Query: 480 cgctcagcatgccctcgcatcgacagca 507 | ||| ||||| |||||||| ||||||| Sbjct: 8660 ctctcggcatggcctcgcattgacagca 8633 Score = 107 bits (54), Expect = 5e-20 Identities = 84/94 (89%) Strand = Plus / Minus Query: 116 ctacgcacgcccgatcttctccaccagccgtctctcgatctccatcctcttcctcgtgag 175 |||||| ||||| ||||||||||||||||| ||||| |||||||||||||||||| |||| Sbjct: 9141 ctacgcgcgcccaatcttctccaccagccgcctctcaatctccatcctcttcctcatgag 9082 Query: 176 cgcggtgtacttcttcaggagctccctgccctcc 209 | | |||||||||| |||||||||| || ||||| Sbjct: 9081 caccgtgtacttctccaggagctccttgtcctcc 9048 Score = 87.7 bits (44), Expect = 4e-14 Identities = 89/104 (85%) Strand = Plus / Minus Query: 231 agctttgcgcccagcgaggtcttctccaggttgcccacgtacatgcgggagatgggaaca 290 |||||||| |||| ||||||||||||||||| ||| |||||||| ||||||||| || Sbjct: 9023 agctttgcacccaaggaggtcttctccaggttaccctggtacatgcaggagatggggacg 8964 Query: 291 aagcctccttcctccttgcacagccatccgtgggcggctctcag 334 |||| |||||||| ||||||||||| || ||||| |||||||| Sbjct: 8963 aagctcccttcctcattgcacagccagccatgggcagctctcag 8920 Score = 67.9 bits (34), Expect = 4e-08 Identities = 43/46 (93%) Strand = Plus / Minus Query: 628 ctggaagaggaggcaggatttcatggtctttgtagtagaatcctaa 673 ||||||| || ||||| ||||||||||||||||||||||||||||| Sbjct: 8346 ctggaagtggcggcagaatttcatggtctttgtagtagaatcctaa 8301 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 531 acctcagattgtggatcaaattcttgcacctcacg 565 ||||||||| ||||||||||||||| ||||||||| Sbjct: 8530 acctcagatggtggatcaaattcttccacctcacg 8496
>gb|AC135800.24| Medicago truncatula clone mth2-14g8, complete sequence Length = 125467 Score = 61.9 bits (31), Expect = 3e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 628 ctggaagaggaggcaggatttcatggtctttgtagtagaatcctaac 674 |||||||||||||||| |||||||| || ||||||||||| |||||| Sbjct: 90185 ctggaagaggaggcagaatttcatgctccttgtagtagaaacctaac 90139
>gb|AC157757.24| Medicago truncatula clone mth2-16j22, complete sequence Length = 139728 Score = 61.9 bits (31), Expect = 3e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 628 ctggaagaggaggcaggatttcatggtctttgtagtagaatcctaac 674 |||||||||||||||| |||||||| || ||||||||||| |||||| Sbjct: 49473 ctggaagaggaggcagaatttcatgctccttgtagtagaaacctaac 49519
>dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome Length = 1669695 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Plus Query: 187 tcttcaggagctccctgccctcc 209 ||||||||||||||||||||||| Sbjct: 1253114 tcttcaggagctccctgccctcc 1253136
>gb|BC080096.1| Xenopus laevis MGC84291 protein, mRNA (cDNA clone MGC:84291 IMAGE:6956898), complete cds Length = 1466 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 536 agattgtggatcaaattcttgc 557 |||||||||||||||||||||| Sbjct: 244 agattgtggatcaaattcttgc 265
>gb|AC100775.3| Homo sapiens chromosome 18, clone CTD-2526M8, complete sequence Length = 175268 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 185 cttcttcaggagctccctgccctcctcct 213 ||||||| ||||||| ||||||||||||| Sbjct: 94981 cttcttctggagctcactgccctcctcct 94953
>emb|AJ421455.1|TRU421455 Takifugu rubripes complete mitochondrion genome Length = 16447 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 40 gaactaatgattattacctcc 60 ||||||||||||||||||||| Sbjct: 11454 gaactaatgattattacctcc 11474
>gb|AF410153.1| Swinepox virus isolate 17077-99, complete genome Length = 146454 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 48 gattattacctcctactaataatcc 72 |||||||||||||| |||||||||| Sbjct: 42208 gattattacctccttctaataatcc 42184
>ref|XM_577785.1| PREDICTED: Rattus norvegicus similar to RIKEN cDNA C230052I12 (LOC502320), mRNA Length = 624 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 622 aaccaactggaagaggaggcaggat 646 |||||||||||||| |||||||||| Sbjct: 360 aaccaactggaagatgaggcaggat 336
>dbj|AP006045.1| Takifugu rubripes mitochondrial DNA, complete genome Length = 16449 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 40 gaactaatgattattacctcc 60 ||||||||||||||||||||| Sbjct: 11455 gaactaatgattattacctcc 11475
>emb|AL773527.8| Pig DNA sequence from clone XX-707F1, complete sequence Length = 137286 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 193 ggagctccctgccctcctcct 213 ||||||||||||||||||||| Sbjct: 80397 ggagctccctgccctcctcct 80417
>ref|XM_507838.1| PREDICTED: Pan troglodytes a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 14 (LOC450513), mRNA Length = 6843 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 aggtcttctccaggttgccc 266 |||||||||||||||||||| Sbjct: 6797 aggtcttctccaggttgccc 6778
>ref|NM_139155.1| Homo sapiens ADAM metallopeptidase with thrombospondin type 1 motif, 14 (ADAMTS14), transcript variant 1, mRNA Length = 3730 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 aggtcttctccaggttgccc 266 |||||||||||||||||||| Sbjct: 3635 aggtcttctccaggttgccc 3616
>ref|NM_080722.2| Homo sapiens ADAM metallopeptidase with thrombospondin type 1 motif, 14 (ADAMTS14), transcript variant 2, mRNA Length = 3721 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 aggtcttctccaggttgccc 266 |||||||||||||||||||| Sbjct: 3626 aggtcttctccaggttgccc 3607
>gb|AC160028.9| Mus musculus 10 BAC RP24-570M12 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 223055 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 243 agcgaggtcttctccaggtt 262 |||||||||||||||||||| Sbjct: 133080 agcgaggtcttctccaggtt 133099
>gb|AC007852.9| Drosophila melanogaster clone BACR33A10, complete sequence Length = 186333 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 177 gcggtgtacttcttcaggagctcc 200 ||||||||||||||||| |||||| Sbjct: 29191 gcggtgtacttcttcagcagctcc 29168
>gb|AC007588.5| Drosophila melanogaster clone BACR30O03, complete sequence Length = 165177 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 177 gcggtgtacttcttcaggagctcc 200 ||||||||||||||||| |||||| Sbjct: 43242 gcggtgtacttcttcagcagctcc 43265
>ref|XM_959353.1| Neurospora crassa OR74A hypothetical protein (NCU09744.1) partial mRNA Length = 1062 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 gccctcctcctcgggcgccg 222 |||||||||||||||||||| Sbjct: 756 gccctcctcctcgggcgccg 737
>ref|XM_330393.1| Neurospora crassa OR74A hypothetical protein (NCU09744.1) partial mRNA Length = 1062 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 gccctcctcctcgggcgccg 222 |||||||||||||||||||| Sbjct: 756 gccctcctcctcgggcgccg 737
>ref|NM_025695.3| Mus musculus SMC6 structural maintenance of chromosomes 6-like 1 (yeast) (Smc6l1), mRNA Length = 5617 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 278 ggagatgggaacaaagcctccttc 301 ||||| |||||||||||||||||| Sbjct: 3346 ggagaggggaacaaagcctccttc 3369
>ref|XM_711263.1| Candida albicans SC5314 putative protein kinase (CaO19_12690), mRNA Length = 3462 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 attatcaattgaactaatga 49 |||||||||||||||||||| Sbjct: 2754 attatcaattgaactaatga 2735
>ref|XM_711200.1| Candida albicans SC5314 putative protein kinase (CaO19_5224), mRNA Length = 2835 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 attatcaattgaactaatga 49 |||||||||||||||||||| Sbjct: 2754 attatcaattgaactaatga 2735
>gb|AC069538.10| Homo sapiens chromosome 10 clone RP11-205C5, complete sequence Length = 169772 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 aggtcttctccaggttgccc 266 |||||||||||||||||||| Sbjct: 132527 aggtcttctccaggttgccc 132546
>gb|AC139207.10| Mus musculus chromosome 12, clone RP23-102M4, complete sequence Length = 246007 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 278 ggagatgggaacaaagcctccttc 301 ||||| |||||||||||||||||| Sbjct: 101635 ggagaggggaacaaagcctccttc 101658
>ref|XM_390183.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG10007.1) partial mRNA Length = 3402 Score = 40.1 bits (20), Expect = 9.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 143 ccgtctctcgatctccatcctcttcctc 170 |||||||||||||| | ||||||||||| Sbjct: 32 ccgtctctcgatcttcctcctcttcctc 59
>gb|AC122465.4| Mus musculus BAC clone RP24-304I22 from chromosome 13, complete sequence Length = 142340 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 368 aactgtgaagacagggcagc 387 |||||||||||||||||||| Sbjct: 59146 aactgtgaagacagggcagc 59165
>gb|BC026429.1| Mus musculus SMC6 structural maintenance of chromosomes 6-like 1 (yeast), mRNA (cDNA clone IMAGE:4224576), complete cds Length = 1551 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 278 ggagatgggaacaaagcctccttc 301 ||||| |||||||||||||||||| Sbjct: 786 ggagaggggaacaaagcctccttc 809
>emb|AL358817.19| Human DNA sequence from clone RP11-399N22 on chromosome 10 Contains 3' end of the ADAMTS14 gene for a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif 14, a novel gene (FLJ32820), and a ribosomal protein S26 pseudogene, complete sequence Length = 134358 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 aggtcttctccaggttgccc 266 |||||||||||||||||||| Sbjct: 85922 aggtcttctccaggttgccc 85903
>emb|AL353621.19| Human DNA sequence from clone RP11-490D19 on chromosome 9 Contains a novel pseudogene, the MRPL50 gene for mitochondrial ribosomal protein L50, the ZNF189 gene for zinc finger protein 189, the ALDOB gene for aldolase B, fructose-bisphosphate, a NADH dehydrogenase (ubiquinone) 1 alpha subcomplex (NDUFA4) pseudogene, three novel genes, the 5' end of the RNF20 gene for ring finger protein 20 and three CpG islands, complete sequence Length = 164115 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 632 aagaggaggcaggatttcat 651 |||||||||||||||||||| Sbjct: 94225 aagaggaggcaggatttcat 94206
>emb|CR293504.11| Zebrafish DNA sequence from clone CH211-147G3 in linkage group 10, complete sequence Length = 165086 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 ctctcgatctccatcctctt 166 |||||||||||||||||||| Sbjct: 28905 ctctcgatctccatcctctt 28886
>emb|AL731589.3|OSJN00239 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039G19, complete sequence Length = 144144 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 tcctcttcctcgtgagcgcg 179 |||||||||||||||||||| Sbjct: 68911 tcctcttcctcgtgagcgcg 68892
>emb|AJ345098.1|HSA345098 Homo sapiens mRNA for etalloprotease-disintegrin protease (ADAMTS14 gene) Length = 3721 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 aggtcttctccaggttgccc 266 |||||||||||||||||||| Sbjct: 3626 aggtcttctccaggttgccc 3607
>emb|AJ310552.1|MMU310552 Mus musculus mRNA for SMC6 protein Length = 3302 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 278 ggagatgggaacaaagcctccttc 301 ||||| |||||||||||||||||| Sbjct: 2938 ggagaggggaacaaagcctccttc 2961
>gb|DQ248036.1| Ilyodon whitei clone IW193 microsatellite sequence Length = 366 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 atctccatcctcttcctcgt 172 |||||||||||||||||||| Sbjct: 302 atctccatcctcttcctcgt 321
>dbj|AK220488.1| Mus musculus mRNA for mKIAA4103 protein Length = 5272 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 278 ggagatgggaacaaagcctccttc 301 ||||| |||||||||||||||||| Sbjct: 3021 ggagaggggaacaaagcctccttc 3044
>ref|NM_137086.2| Drosophila melanogaster CG8257-RA (CG8257), mRNA Length = 1781 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 177 gcggtgtacttcttcaggagctcc 200 ||||||||||||||||| |||||| Sbjct: 1061 gcggtgtacttcttcagcagctcc 1038
>gb|AF366351.1| Homo sapiens ADAMTS14 (ADAMTS14) mRNA, complete cds Length = 3624 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 aggtcttctccaggttgccc 266 |||||||||||||||||||| Sbjct: 3553 aggtcttctccaggttgccc 3534
>gb|AF358666.1|AF358666 Homo sapiens a disintegrin-like and metalloprotease with thrombospondin type 1 motif 14 precursor (ADAMTS14) mRNA, complete cds Length = 3672 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 aggtcttctccaggttgccc 266 |||||||||||||||||||| Sbjct: 3626 aggtcttctccaggttgccc 3607
>ref|XM_679936.1| PREDICTED: Danio rerio similar to Ras GTPase-activating protein 3 (GAP1(IP4BP)) (Ins P4-binding protein) (LOC556983), mRNA Length = 2118 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 ccgtctctcgatctccatcc 162 |||||||||||||||||||| Sbjct: 1804 ccgtctctcgatctccatcc 1785
>gb|AY058452.1| Drosophila melanogaster GH24360 full length cDNA Length = 1787 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 177 gcggtgtacttcttcaggagctcc 200 ||||||||||||||||| |||||| Sbjct: 1052 gcggtgtacttcttcagcagctcc 1029
>dbj|AK003872.1| Mus musculus 18-day embryo whole body cDNA, RIKEN full-length enriched library, clone:1110020L24 product:hypothetical P-loop containing nucleotide triphosphate hydrolases structure containing protein, full insert sequence Length = 1017 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 278 ggagatgggaacaaagcctccttc 301 ||||| |||||||||||||||||| Sbjct: 299 ggagaggggaacaaagcctccttc 322
>dbj|AK014442.1| Mus musculus 18 days pregnant adult female placenta and extra embryonic tissue cDNA, RIKEN full-length enriched library, clone:3830418C19 product:SMC6 PROTEIN homolog [Mus musculus], full insert sequence Length = 1118 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 278 ggagatgggaacaaagcctccttc 301 ||||| |||||||||||||||||| Sbjct: 550 ggagaggggaacaaagcctccttc 573
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 tcctcttcctcgtgagcgcg 179 |||||||||||||||||||| Sbjct: 5092638 tcctcttcctcgtgagcgcg 5092619
>gb|AF079317.1| Sphingomonas aromaticivorans plasmid pNL1, complete plasmid sequence Length = 184457 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 gcgccgggaccgccagcttt 236 |||||||||||||||||||| Sbjct: 6363 gcgccgggaccgccagcttt 6382
>gb|BC090630.1| Mus musculus SMC6 structural maintenance of chromosomes 6-like 1 (yeast), mRNA (cDNA clone MGC:96146 IMAGE:30536320), complete cds Length = 5617 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 278 ggagatgggaacaaagcctccttc 301 ||||| |||||||||||||||||| Sbjct: 3346 ggagaggggaacaaagcctccttc 3369
>emb|CR759796.17| Zebrafish DNA sequence from clone DKEY-18A10 in linkage group 10, complete sequence Length = 130961 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 ctctcgatctccatcctctt 166 |||||||||||||||||||| Sbjct: 70693 ctctcgatctccatcctctt 70712
>gb|AE003815.4| Drosophila melanogaster chromosome 2R, section 35 of 73 of the complete sequence Length = 229685 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 177 gcggtgtacttcttcaggagctcc 200 ||||||||||||||||| |||||| Sbjct: 14103 gcggtgtacttcttcagcagctcc 14126
>emb|CR626961.6| Zebrafish DNA sequence from clone CH211-160F13 in linkage group 10, complete sequence Length = 167229 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 ctctcgatctccatcctctt 166 |||||||||||||||||||| Sbjct: 62876 ctctcgatctccatcctctt 62895
>emb|CT030166.8| Mouse DNA sequence from clone RP23-320I11 on chromosome 13, complete sequence Length = 222942 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 368 aactgtgaagacagggcagc 387 |||||||||||||||||||| Sbjct: 151899 aactgtgaagacagggcagc 151880
>emb|CR394538.6| Zebrafish DNA sequence from clone DKEY-189I22 in linkage group 10, complete sequence Length = 155394 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 ctctcgatctccatcctctt 166 |||||||||||||||||||| Sbjct: 70130 ctctcgatctccatcctctt 70111
>gb|AC162175.10| Mus musculus chromosome 7, clone RP23-327E18, complete sequence Length = 224178 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 450 atcctcttcgggggattgggcatg 473 ||||||||| |||||||||||||| Sbjct: 177063 atcctcttctggggattgggcatg 177086
>emb|AL672228.14| Mouse DNA sequence from clone RP24-133C15 on chromosome 11, complete sequence Length = 162556 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 ggcggctctcagggctgcac 342 |||||||||||||||||||| Sbjct: 106121 ggcggctctcagggctgcac 106102 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,466,159 Number of Sequences: 3902068 Number of extensions: 5466159 Number of successful extensions: 109767 Number of sequences better than 10.0: 58 Number of HSP's better than 10.0 without gapping: 58 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 109561 Number of HSP's gapped (non-prelim): 205 length of query: 682 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 659 effective length of database: 17,143,297,704 effective search space: 11297433186936 effective search space used: 11297433186936 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)