ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags6d16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1STAB1_MOUSE (Q8R4Y4) Stabilin-1 precursor (FEEL-1 protein) 34 0.27
2ACFD_ECOLI (Q46837) Putative lipoprotein acfD homolog precursor 32 1.3
3STAB1_HUMAN (Q9NY15) Stabilin-1 precursor (FEEL-1 protein) (MS-1... 31 2.3
4YS31_CAEEL (Q09368) Hypothetical protein ZK1321.1 30 6.6
5OXDC_BACSU (O34714) Oxalate decarboxylase oxdC (EC 4.1.1.2) 30 6.6
6SH2P1_MOUSE (Q62018) SH2 domain-binding protein 1 (Tetratricopep... 30 6.6
7MOK13_SCHPO (Q9Y719) Cell wall alpha-1,3-glucan synthase mok13 (... 29 8.6

>STAB1_MOUSE (Q8R4Y4) Stabilin-1 precursor (FEEL-1 protein)|
          Length = 2571

 Score = 34.3 bits (77), Expect = 0.27
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +2

Query: 362  FGGTVYCGLCPFRRSGPT-TVILTCPSSCTSNTVRGSPM**CHVSAQGMRCSRAIS 526
            F GT  C +C   R GPT + +  C        +RG+    CH   QG+RC + I+
Sbjct: 1363 FHGTA-CEMCELGRYGPTCSGVCDCDHGLCQEGLRGNGSCVCHAGWQGLRCDQKIT 1417



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>ACFD_ECOLI (Q46837) Putative lipoprotein acfD homolog precursor|
          Length = 1520

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 297 VKTPGRDPDLHYSFVGVTCAPAYQFEDDEMATRDG 193
           V TPG  PDL+ SFV       YQ++  E+   +G
Sbjct: 243 VTTPGTKPDLNASFVSANAEQFYQYQPTEIILSEG 277



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>STAB1_HUMAN (Q9NY15) Stabilin-1 precursor (FEEL-1 protein) (MS-1 antigen)|
          Length = 2570

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +2

Query: 362  FGGTVYCGLCPFRRSGPT-TVILTCPSSCTSNTVRGSPM**CHVSAQGMRCSRAI-SPAG 535
            F GT  C +C   R GP  T +  C        ++G     C+V  QG+RC + I SP  
Sbjct: 1362 FHGTA-CEVCELGRYGPNCTGVCDCAHGLCQEGLQGDGSCVCNVGWQGLRCDQKITSPQC 1420

Query: 536  RRK 544
             RK
Sbjct: 1421 PRK 1423



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>YS31_CAEEL (Q09368) Hypothetical protein ZK1321.1|
          Length = 158

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +1

Query: 199 TCGHFIILELVC-RSTGHSNERIMQVRVPSGCLDKNTAIISEGLDIVGQEGAKPH 360
           +CG  +  +  C R  G+SN+++   R+P  CL +   I   G+ +     +KPH
Sbjct: 66  SCGDPLATKSACGRKHGNSNQKLACFRLPDPCLREYAVIFEHGVPL---PPSKPH 117



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>OXDC_BACSU (O34714) Oxalate decarboxylase oxdC (EC 4.1.1.2)|
          Length = 385

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 27/111 (24%), Positives = 47/111 (42%)
 Frame = -1

Query: 579 YKVERAVSSAIYFLLPAGEIARLHRIPCAETWHYYMGEPLTVFEVHDDGQVKMTVVGPDL 400
           +KV + ++SA+  + P G +  LH  P    W YY+            G+ +MTV   D 
Sbjct: 251 FKVSKTIASALVTVEP-GAMRELHWHPNTHEWQYYI-----------SGKARMTVFASD- 297

Query: 399 RKGQRPQYTVPPNVWFGAFLTHDIESFTDDGSVFVKTPGRDPDLHYSFVGV 247
              +   Y      +    + H +E+  D+  VF++      D HY+ V +
Sbjct: 298 GHARTFNYQAGDVGYVPFAMGHYVENIGDEPLVFLEI---FKDDHYADVSL 345



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>SH2P1_MOUSE (Q62018) SH2 domain-binding protein 1 (Tetratricopeptide|
            repeat-containing, SH2-binding phosphoprotein of 150 kDa)
            (TPR-containing, SH2-binding phosphoprotein of 150 kDa)
            (p150TSP)
          Length = 1173

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 468  LPCSSAMSQRKGCGAAEQSPQQAGGSRLHYSQHAPP 575
            LP S    +RKG G+ ++  ++ GG R    +  PP
Sbjct: 929  LPVSKKKKRRKGSGSEQEGEEEEGGERKKKRRRRPP 964



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>MOK13_SCHPO (Q9Y719) Cell wall alpha-1,3-glucan synthase mok13 (EC 2.4.1.183)|
          Length = 2358

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 290  VLTKTLPSSVKDSISWVRKAPNHTF 364
            VL +  PS +K+S++W+++AP   F
Sbjct: 1009 VLVRLPPSELKESVTWIKEAPPSNF 1033


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,910,161
Number of Sequences: 219361
Number of extensions: 1940231
Number of successful extensions: 5163
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5161
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4986986160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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