>YHPK_CAEEL (O62518) Hypothetical protein ZK795.3 in chromosome IV|
          Length = 292

 Score = 89.0 bits (219), Expect = 3e-18
 Identities = 42/67 (62%), Positives = 49/67 (73%)
 Frame = -1

Query: 350 KTGEXTANIMKHLFPVPKPDSKRLITFANRDDYISFRHHXYEKXGGPKSIDLKEVGPRFE 171
           K G     I+KHLFPVPKPDSKR+ITF+N +DYISFRHH Y K      ++L E GPRFE
Sbjct: 189 KLGHRFTTILKHLFPVPKPDSKRIITFSNSEDYISFRHHVY-KTENDGEVELTEAGPRFE 247

Query: 170 LRLYQIK 150
           L+ YQIK
Sbjct: 248 LKPYQIK 254

>IMP4_RAT (Q5PQR5) U3 small nucleolar ribonucleoprotein protein IMP4 (U3|
           snoRNP protein IMP4)
          Length = 291

 Score = 87.4 bits (215), Expect = 8e-18
 Identities = 39/67 (58%), Positives = 55/67 (82%)
 Frame = -1

Query: 350 KTGEXTANIMKHLFPVPKPDSKRLITFANRDDYISFRHHXYEKXGGPKSIDLKEVGPRFE 171
           + G+  ++I+++LFPVPK DS R+ITFAN+DDYISFRHH Y+K    ++++L EVGPRFE
Sbjct: 194 RLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKT-DHRNVELTEVGPRFE 252

Query: 170 LRLYQIK 150
           L+LY I+
Sbjct: 253 LKLYMIR 259

>IMP4_PONPY (Q5R947) U3 small nucleolar ribonucleoprotein protein IMP4 (U3|
           snoRNP protein IMP4)
          Length = 291

 Score = 87.4 bits (215), Expect = 8e-18
 Identities = 39/67 (58%), Positives = 55/67 (82%)
 Frame = -1

Query: 350 KTGEXTANIMKHLFPVPKPDSKRLITFANRDDYISFRHHXYEKXGGPKSIDLKEVGPRFE 171
           + G+  ++I+++LFPVPK DS R+ITFAN+DDYISFRHH Y+K    ++++L EVGPRFE
Sbjct: 194 RLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKT-DHRNVELTEVGPRFE 252

Query: 170 LRLYQIK 150
           L+LY I+
Sbjct: 253 LKLYMIR 259

>IMP4_MOUSE (Q8VHZ7) U3 small nucleolar ribonucleoprotein protein IMP4 (U3|
           snoRNP protein IMP4)
          Length = 291

 Score = 87.4 bits (215), Expect = 8e-18
 Identities = 39/67 (58%), Positives = 55/67 (82%)
 Frame = -1

Query: 350 KTGEXTANIMKHLFPVPKPDSKRLITFANRDDYISFRHHXYEKXGGPKSIDLKEVGPRFE 171
           + G+  ++I+++LFPVPK DS R+ITFAN+DDYISFRHH Y+K    ++++L EVGPRFE
Sbjct: 194 RLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKT-DHRNVELTEVGPRFE 252

Query: 170 LRLYQIK 150
           L+LY I+
Sbjct: 253 LKLYMIR 259

>IMP4_HUMAN (Q96G21) U3 small nucleolar ribonucleoprotein protein IMP4 (U3|
           snoRNP protein IMP4) (Brix domain-containing protein 4)
          Length = 291

 Score = 87.4 bits (215), Expect = 8e-18
 Identities = 39/67 (58%), Positives = 55/67 (82%)
 Frame = -1

Query: 350 KTGEXTANIMKHLFPVPKPDSKRLITFANRDDYISFRHHXYEKXGGPKSIDLKEVGPRFE 171
           + G+  ++I+++LFPVPK DS R+ITFAN+DDYISFRHH Y+K    ++++L EVGPRFE
Sbjct: 194 RLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKT-DHRNVELTEVGPRFE 252

Query: 170 LRLYQIK 150
           L+LY I+
Sbjct: 253 LKLYMIR 259

>IMP4_DEBHA (Q6BYD9) U3 small nucleolar ribonucleoprotein protein IMP4 (U3|
           snoRNP protein IMP4)
          Length = 284

 Score = 73.2 bits (178), Expect = 2e-13
 Identities = 36/66 (54%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
 Frame = -1

Query: 344 GEXTANIMKHLFPVP-KPDSKRLITFANRDDYISFRHHXYEKXGGPKSIDLKEVGPRFEL 168
           G+    IMKHLFP   K DS R+ITF N DD+IS RHH Y K     +++L EVGPRFE+
Sbjct: 192 GKRVVKIMKHLFPPGVKKDSSRVITFINNDDFISVRHHMYVKT--KDTVELSEVGPRFEM 249

Query: 167 RLYQIK 150
           RLY+++
Sbjct: 250 RLYELR 255

>IMP4_SCHPO (O13823) U3 small nucleolar ribonucleoprotein protein imp4 (U3|
           snoRNP protein imp4)
          Length = 289

 Score = 72.4 bits (176), Expect = 3e-13
 Identities = 36/67 (53%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
 Frame = -1

Query: 350 KTGEXTANIMKHLFPV-PKPDSKRLITFANRDDYISFRHHXYEKXGGPKSIDLKEVGPRF 174
           K G+     +  LFP  PK  + R++TFAN DDYISFRHH Y K  GPK I L E GPRF
Sbjct: 195 KLGKRVKTALSALFPPDPKDTTPRVVTFANTDDYISFRHHIYAKT-GPKQIILSEAGPRF 253

Query: 173 ELRLYQI 153
           E++L++I
Sbjct: 254 EMKLFEI 260

>IMP4_YARLI (Q6C804) U3 small nucleolar ribonucleoprotein protein IMP4 (U3|
           snoRNP protein IMP4)
          Length = 283

 Score = 68.6 bits (166), Expect = 4e-12
 Identities = 35/66 (53%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
 Frame = -1

Query: 344 GEXTANIMKHLFPVP-KPDSKRLITFANRDDYISFRHHXYEKXGGPKSIDLKEVGPRFEL 168
           G+    I+KHLFP   K DS R+ITFANR D+IS R H Y K    + ++L EVGPRFE+
Sbjct: 192 GKRVVQILKHLFPPGVKKDSARVITFANRGDFISVRQHVYVKT--REGVELAEVGPRFEM 249

Query: 167 RLYQIK 150
           RLY ++
Sbjct: 250 RLYDLR 255

>IMP4_YEAST (P53941) U3 small nucleolar ribonucleoprotein protein IMP4 (U3|
           snoRNP protein IMP4)
          Length = 290

 Score = 66.2 bits (160), Expect = 2e-11
 Identities = 32/66 (48%), Positives = 47/66 (71%), Gaps = 1/66 (1%)
 Frame = -1

Query: 344 GEXTANIMKHLFPV-PKPDSKRLITFANRDDYISFRHHXYEKXGGPKSIDLKEVGPRFEL 168
           G+    I+KHLF   PK DS+R+ITFANR D+IS R H Y +    + +++ EVGPRFE+
Sbjct: 199 GKRVVCILKHLFNAGPKKDSERVITFANRGDFISVRQHVYVRT--REGVEIAEVGPRFEM 256

Query: 167 RLYQIK 150
           RL++++
Sbjct: 257 RLFELR 262

>IMP4_CANGA (Q6FNN7) U3 small nucleolar ribonucleoprotein protein IMP4 (U3|
           snoRNP protein IMP4)
          Length = 288

 Score = 66.2 bits (160), Expect = 2e-11
 Identities = 32/66 (48%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
 Frame = -1

Query: 344 GEXTANIMKHLFPV-PKPDSKRLITFANRDDYISFRHHXYEKXGGPKSIDLKEVGPRFEL 168
           G     I+K+LFP  PK DS R+ITFANR D+IS R H Y +      +++ EVGPRFE+
Sbjct: 197 GNRVVTILKNLFPPGPKKDSSRVITFANRGDFISVRQHVYVRT--KDGVEMAEVGPRFEM 254

Query: 167 RLYQIK 150
           RL++++
Sbjct: 255 RLFELR 260

>IMP4_ASHGO (Q755T8) U3 small nucleolar ribonucleoprotein protein IMP4 (U3|
           snoRNP protein IMP4)
          Length = 283

 Score = 65.9 bits (159), Expect = 2e-11
 Identities = 33/65 (50%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
 Frame = -1

Query: 344 GEXTANIMKHLFPVP-KPDSKRLITFANRDDYISFRHHXYEKXGGPKSIDLKEVGPRFEL 168
           G+    I+KH+FP   K DS R+ITFANR D+IS R H Y K      ++L EVGPRFE+
Sbjct: 192 GQRVVKILKHMFPPGVKRDSPRVITFANRGDFISVRQHVYVKT--RDGVELAEVGPRFEM 249

Query: 167 RLYQI 153
           +LY++
Sbjct: 250 KLYEL 254

>YUY1_CAEEL (P54073) Hypothetical protein F44G4.1 in chromosome II|
          Length = 384

 Score = 53.9 bits (128), Expect = 9e-08
 Identities = 32/70 (45%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
 Frame = -1

Query: 350 KTGEXTANIMKHLFPV-PKPDSKRLITFANRDDYISFRHHXYE-KXGGPKSIDLKEVGPR 177
           + G   A ++  LFP  PK   +R++TF N+ DYI FRHH YE K  G K+  L E+GPR
Sbjct: 288 RLGHNIARMLACLFPHDPKFTGRRVVTFHNQRDYIFFRHHRYEFKKEGSKAA-LLELGPR 346

Query: 176 FELRLYQIKR 147
           F LRL  +++
Sbjct: 347 FTLRLKWLQK 356

>RPF1_DROME (Q9VKB4) Probable ribosome production factor 1 (Ribosome biogenesis|
           protein RPF1)
          Length = 394

 Score = 51.2 bits (121), Expect = 6e-07
 Identities = 23/51 (45%), Positives = 33/51 (64%)
 Frame = -1

Query: 302 PKPDSKRLITFANRDDYISFRHHXYEKXGGPKSIDLKEVGPRFELRLYQIK 150
           P+   +R +TF N+ DYI FRHH YE     K + L+E+GPRF L+L  ++
Sbjct: 314 PEFRGRRAVTFHNQRDYIFFRHHRYEFTKEGKRVKLRELGPRFTLKLRSLQ 364

>RPF1_RAT (Q5RJS9) Ribosome production factor 1 (Ribosome biogenesis protein|
           RPF1) (Brix domain-containing protein 5)
          Length = 345

 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
 Frame = -1

Query: 350 KTGEXTANIMKHLFPV-PKPDSKRLITFANRDDYISFRHHXYEKXGGPKSIDLKEVGPRF 174
           + G     +   LFP  P+   +++ TF N+ DYI FR H Y      K + ++E+GPRF
Sbjct: 254 RLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRY-IFKSEKKVGIQELGPRF 312

Query: 173 ELRLYQIKR----RNCGPXRSAERVCA 105
            L+L  +++       G      +VCA
Sbjct: 313 TLKLRSLQKGTFDSKYGEYEWVHKVCA 339

>RPF1_YEAST (P38805) Ribosome production factor 1 (Ribosome biogenesis protein|
           RPF1)
          Length = 295

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
 Frame = -1

Query: 350 KTGEXTANIMKHLFPV-PKPDSKRLITFANRDDYISFRHHXYEKXGGPKSIDLKEVGPRF 174
           + G+    + + + P  P  + +++IT  N+ DYI FR H Y      + + L+E+GP+F
Sbjct: 205 RLGQTVGRLFQSILPQNPDIEGRQVITLHNQRDYIFFRRHRYVFKDNER-VGLQELGPQF 263

Query: 173 ELRLYQIKR 147
            L+L +++R
Sbjct: 264 TLKLKRLQR 272

>RPF1_PONPY (Q5R631) Ribosome production factor 1 (Ribosome biogenesis protein|
           RPF1) (Brix domain-containing protein 5)
          Length = 349

 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
 Frame = -1

Query: 350 KTGEXTANIMKHLFPV-PKPDSKRLITFANRDDYISFRHHXYEKXGGPKSIDLKEVGPRF 174
           + G     +   LFP  P+   +++ TF N+ DYI FR H Y      K + ++E+GPRF
Sbjct: 254 RLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRY-IFRSEKKVGIQELGPRF 312

Query: 173 ELRLYQIKR 147
            L+L  +++
Sbjct: 313 TLKLRSLQK 321

>RPF1_MOUSE (Q7TND5) Ribosome production factor 1 (Ribosome biogenesis protein|
           RPF1) (Brix domain-containing protein 5)
          Length = 349

 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
 Frame = -1

Query: 350 KTGEXTANIMKHLFPV-PKPDSKRLITFANRDDYISFRHHXYEKXGGPKSIDLKEVGPRF 174
           + G     +   LFP  P+   +++ TF N+ DYI FR H Y      K + ++E+GPRF
Sbjct: 254 RLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRY-IFKSEKKVGIQELGPRF 312

Query: 173 ELRLYQIKR 147
            L+L  +++
Sbjct: 313 TLKLRSLQK 321

>RPF1_HUMAN (Q9H9Y2) Ribosome production factor 1 (Ribosome biogenesis protein|
           RPF1) (Brix domain-containing protein 5)
          Length = 349

 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
 Frame = -1

Query: 350 KTGEXTANIMKHLFPV-PKPDSKRLITFANRDDYISFRHHXYEKXGGPKSIDLKEVGPRF 174
           + G     +   LFP  P+   +++ TF N+ DYI FR H Y      K + ++E+GPRF
Sbjct: 254 RLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRY-IFRSEKKVGIQELGPRF 312

Query: 173 ELRLYQIKR 147
            L+L  +++
Sbjct: 313 TLKLRSLQK 321

>RPF1_XENLA (Q8AVP1) Ribosome production factor 1 (Ribosome biogenesis protein|
           RPF1) (Brix domain-containing protein 5)
          Length = 343

 Score = 41.6 bits (96), Expect = 5e-04
 Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
 Frame = -1

Query: 350 KTGEXTANIMKHLFPV-PKPDSKRLITFANRDDYISFRHHXYEKXGGPKSIDLKEVGPRF 174
           + G     +   L+P  P    +++ TF N+ DYI FR+H Y      K + ++E+GPRF
Sbjct: 248 RLGHSIGRMFASLYPHDPHFVGRQVATFHNQRDYIFFRYHRY-LFKSEKKVGIQELGPRF 306

Query: 173 ELRLYQIKR 147
            L+L  +++
Sbjct: 307 TLKLRSLQK 315

>RPF1_BRARE (Q6IQU6) Ribosome production factor 1 (Ribosome biogenesis protein|
           RPF1) (Brix domain-containing protein 5)
          Length = 330

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
 Frame = -1

Query: 350 KTGEXTANIMKHLFPV-PKPDSKRLITFANRDDYISFRHHXYEKXGGPKSIDLKEVGPRF 174
           + G     +   LFP  P+   +++ TF N+ D+I FR H Y      K + ++E+GPRF
Sbjct: 235 RLGHSIGRLFAALFPHDPQFVGRQVATFHNQRDFIFFRFHRY-IFKNEKKVGIQELGPRF 293

Query: 173 ELRLYQIKR 147
            L+L  +++
Sbjct: 294 TLKLRSLQK 302

>YDS4_SCHPO (O14180) Hypothetical protein C4F8.04 in chromosome I|
          Length = 306

 Score = 38.5 bits (88), Expect = 0.004
 Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
 Frame = -1

Query: 350 KTGEXTANIMKHLF-PVPKPDSKRLITFANRDDYISFRHHXY---EKXGGPKSID--LKE 189
           + G   A   + LF   P+   ++++T   + D++ FR H Y   EK   P  I   L+E
Sbjct: 206 RLGMTVARAFQSLFIQTPQIQGRQVVTIHCQRDFLFFRRHRYAFREKSNMPDGIGTGLQE 265

Query: 188 VGPRFELRLYQIKR 147
           +GPRF +RL  +++
Sbjct: 266 LGPRFTMRLRMVQK 279

>NIPBL_HUMAN (Q6KC79) Nipped-B-like protein (Delangin) (SCC2 homolog)|
          Length = 2804

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 153  DLVEPQLKTGPNLLQVNGFGATXFFVXVMPE 245
            +L+E QL T   +LQV+  G T FFV  + E
Sbjct: 1399 ELLEIQLLTDTTILQVSSMGITPFFVENVSE 1429

>NPBL_MOUSE (Q6KCD5) Nipped-B-like protein (Delangin homolog) (SCC2 homolog)|
          Length = 2798

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 153  DLVEPQLKTGPNLLQVNGFGATXFFVXVMPE 245
            +L+E QL T   +LQV+  G T FFV  + E
Sbjct: 1393 ELLEIQLLTDTTILQVSSMGITPFFVENVSE 1423

>BXDC2_XENLA (Q8UVY2) Brix domain-containing protein 2 (Ribosome biogenesis|
           protein Brix) (Bx24)
          Length = 339

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = -1

Query: 308 PVPKPDSKRLITFANRDDYISFRHHXYEKXGGPKSIDLKEVGPRFELRLYQIKRRNCG 135
           P  +P    + TF+  D+ I FR++   +    +   L E+GPRF L L +I + + G
Sbjct: 189 PRSQPFVDHIFTFSIADNRIWFRNYQIIE----EDAALVEIGPRFVLNLIKIFKGSFG 242

>FTSX_HAEIN (P44872) Cell division protein ftsX homolog|
          Length = 310

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 163 STRSNVGTVDQXEAQNEFVLRPYMXTAKKQXSLG 62
           S+RS++  +    A ++F+LRPY+ T      LG
Sbjct: 207 SSRSSIDVMKLLGATDQFILRPYLYTGMIYALLG 240

>Y163_SYNY3 (Q55563) Hypothetical WD-repeat protein sll0163|
          Length = 1693

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -3

Query: 171  VAALPDQT*ELWTKXKRRTSLC*GHT*XLPRSRXRLGXELILTCTA 34
            + A  D T  LW    R   LC GHT  +  ++     + I+TC+A
Sbjct: 1153 LTASRDGTARLWDLEGREIGLCQGHTSWVRNAQFSPDGQWIVTCSA 1198


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,359,028
Number of Sequences: 219361
Number of extensions: 787529
Number of successful extensions: 1568
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1547
length of database: 80,573,946
effective HSP length: 92
effective length of database: 60,392,734
effective search space used: 1449425616
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)