ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags6d13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT024054.1| Zea mays clone EL01N0439D05 mRNA sequence 68 4e-08
2gb|AY112573.1| Zea mays CL25446_1 mRNA sequence 68 4e-08
3gb|AY107026.1| Zea mays PCO106496 mRNA sequence 68 4e-08
4gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 42 2.0
5dbj|AP001972.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 42 2.0
6emb|AL133304.4|CNS01DUL Human chromosome 14 DNA sequence BAC R-1... 42 2.0
7gb|AC163669.2| Mus musculus BAC clone RP23-29H1 from chromosome ... 40 8.0
8gb|AC102714.16| Mus musculus chromosome 5, clone RP24-298D13, co... 40 8.0
9gb|AF121351.2| Mus musculus chromosome X clone CT7-228O4 complet... 40 8.0
10gb|AC091472.2| Mus musculus chromosome X clones RP21-90B15, RP21... 40 8.0
11gb|AC120085.5| Rattus norvegicus 10 BAC CH230-490B8 (Children's ... 40 8.0
12gb|AC123985.10| Mus musculus chromosome 14, clone RP23-154G18, c... 40 8.0
13gb|AC101816.17| Mus musculus chromosome 1, clone RP24-353D23, co... 40 8.0
14gb|AC124512.3| Mus musculus BAC clone RP23-444C17 from chromosom... 40 8.0
15ref|XM_651342.1| Entamoeba histolytica HM-1:IMSS hypothetical pr... 40 8.0
16gb|AC102040.16| Mus musculus chromosome 18, clone RP23-273B8, co... 40 8.0
17gb|AC104897.7| Mus musculus chromosome 12, clone RP23-300E12, co... 40 8.0
18emb|AL139139.9| Human DNA sequence from clone RP5-1052I5 on chro... 40 8.0
19gb|AC092908.9| Homo sapiens 3q BAC RP11-757I12 (Roswell Park Can... 40 8.0
20emb|AL939129.1|SCO939129 Streptomyces coelicolor A3(2) complete ... 40 8.0
21emb|AJ606472.1| Fagus sylvatica mRNA for serine/threonine protei... 40 8.0
22gb|AC055788.7| Homo sapiens chromosome 8, clone RP11-252H14, com... 40 8.0
23gb|AC012031.17| Homo sapiens 3 BAC RP11-91K9 (Roswell Park Cance... 40 8.0
24gb|AC004033.3| Homo sapiens Chromosome 22q11.2 PAC Clone p_m11 I... 40 8.0
25gb|AC005500.2| Homo sapiens 22q11 PAC Clone Clone p52f6 In DGCR ... 40 8.0
26gb|AC007731.16| Homo sapiens chromosome 22 clone b562f10 map 22q... 40 8.0
27gb|AC158782.5| Mus musculus chromosome 5, clone RP23-134H19, com... 40 8.0
28gb|AC024323.4|AC024323 Homo sapiens, clone RP11-28O13, complete ... 40 8.0
29gb|AC104946.4| Homo sapiens chromosome 8, clone RP11-946L20, com... 40 8.0
30emb|AJ606473.1| Fagus sylvatica partial mRNA for serine/threonin... 40 8.0
31emb|X80457.1|MMHMG1 M.musculus HMG1 gene 40 8.0
32gb|AC099724.7| Mus musculus chromosome 18, clone RP23-458P14, co... 40 8.0
33emb|CR974580.6| Mouse DNA sequence from clone RP23-97P6 on chrom... 40 8.0
34dbj|AP005627.1| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 8.0
35emb|AL672002.14| Mouse DNA sequence from clone RP23-252M19 on ch... 40 8.0
36emb|AL845162.9| Mouse DNA sequence from clone RP23-35I8 on chrom... 40 8.0
37emb|AL806532.10| Mouse DNA sequence from clone RP23-387D16 on ch... 40 8.0
38dbj|AB012629.1| Adiantum capillus-veneris CRY1 gene for blue-lig... 40 8.0
39dbj|AB012626.1| Adiantum capillus-veneris CRY1 mRNA for blue-lig... 40 8.0 
>gb|BT024054.1| Zea mays clone EL01N0439D05 mRNA sequence
          Length = 1966

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                        
Query: 365  cgatgaggatgtactgccgcgttctccttttgcccctgttacgcaggggtgcgggcatgg 424
            |||| |||||||||||||||  ||||||| ||||||||||||| || || || |||||||
Sbjct: 1665 cgatcaggatgtactgccgcagtctccttctgcccctgttacgtagcggcgccggcatgg 1606

                  
Query: 425  gctgca 430
            ||||||
Sbjct: 1605 gctgca 1600
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>gb|AY112573.1| Zea mays CL25446_1 mRNA sequence
          Length = 489

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 58/66 (87%)
 Strand = Plus / Plus

                                                                       
Query: 365 cgatgaggatgtactgccgcgttctccttttgcccctgttacgcaggggtgcgggcatgg 424
           |||| |||||||||||||||  ||||||| ||||||||||||| || || || |||||||
Sbjct: 268 cgatcaggatgtactgccgcagtctccttctgcccctgttacgtagcggcgccggcatgg 327

                 
Query: 425 gctgca 430
           ||||||
Sbjct: 328 gctgca 333
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>gb|AY107026.1| Zea mays PCO106496 mRNA sequence
          Length = 887

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                       
Query: 365 cgatgaggatgtactgccgcgttctccttttgcccctgttacgcaggggtgcgggcatgg 424
           |||| |||||||||||||||  | ||||  ||||||||||||||||||| || |||||||
Sbjct: 828 cgatcaggatgtactgccgcagtttcctcctgcccctgttacgcaggggcgctggcatgg 769

                 
Query: 425 gctgca 430
           ||||||
Sbjct: 768 gctgca 763
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 336     cgcgacgacagctacggcgac 356
               |||||||||||||||||||||
Sbjct: 1243044 cgcgacgacagctacggcgac 1243024
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>dbj|AP001972.4| Homo sapiens genomic DNA, chromosome 11q, clone:CTD-2562J17, complete
             sequences
          Length = 215225

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 200   cctccacctccctgaggctgc 220
             |||||||||||||||||||||
Sbjct: 78654 cctccacctccctgaggctgc 78674
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>emb|AL133304.4|CNS01DUL Human chromosome 14 DNA sequence BAC R-116N8 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 141905

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 176   cagcttttctatcatcagaag 196
             |||||||||||||||||||||
Sbjct: 19243 cagcttttctatcatcagaag 19263
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>gb|AC163669.2| Mus musculus BAC clone RP23-29H1 from chromosome 12, complete sequence
          Length = 173903

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 70     aacacaatctatgaggtaaa 89
              ||||||||||||||||||||
Sbjct: 116297 aacacaatctatgaggtaaa 116278
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>gb|AC102714.16| Mus musculus chromosome 5, clone RP24-298D13, complete sequence
          Length = 165774

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      aattattatatgttcacttt 20
              ||||||||||||||||||||
Sbjct: 109212 aattattatatgttcacttt 109193
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>gb|AF121351.2| Mus musculus chromosome X clone CT7-228O4 complete sequence
          Length = 123212

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 121   agaaaaagtaaaccatgtct 140
             ||||||||||||||||||||
Sbjct: 34883 agaaaaagtaaaccatgtct 34864
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>gb|AC091472.2| Mus musculus chromosome X clones RP21-90B15, RP21-12I6 complete sequence
          Length = 193449

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 121    agaaaaagtaaaccatgtct 140
              ||||||||||||||||||||
Sbjct: 171814 agaaaaagtaaaccatgtct 171795
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>gb|AC120085.5| Rattus norvegicus 10 BAC CH230-490B8 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 157493

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 113   gttcaaacagaaaaagtaaa 132
             ||||||||||||||||||||
Sbjct: 16585 gttcaaacagaaaaagtaaa 16566
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>gb|AC123985.10| Mus musculus chromosome 14, clone RP23-154G18, complete sequence
          Length = 229313

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 192   agaagccacctccacctccc 211
             ||||||||||||||||||||
Sbjct: 50347 agaagccacctccacctccc 50328
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>gb|AC101816.17| Mus musculus chromosome 1, clone RP24-353D23, complete sequence
          Length = 190313

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 91     aggtacagtaacaacatcaa 110
              ||||||||||||||||||||
Sbjct: 137040 aggtacagtaacaacatcaa 137021
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>gb|AC124512.3| Mus musculus BAC clone RP23-444C17 from chromosome 18, complete
            sequence
          Length = 192528

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 45   aacaagtctaccacaatgca 64
            ||||||||||||||||||||
Sbjct: 5206 aacaagtctaccacaatgca 5187
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>ref|XM_651342.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (12.t00055)
           partial mRNA
          Length = 1341

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 3   ttattatatgttcactttaa 22
           ||||||||||||||||||||
Sbjct: 909 ttattatatgttcactttaa 928
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>gb|AC102040.16| Mus musculus chromosome 18, clone RP23-273B8, complete sequence
          Length = 250880

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 45    aacaagtctaccacaatgca 64
             ||||||||||||||||||||
Sbjct: 83579 aacaagtctaccacaatgca 83598
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>gb|AC104897.7| Mus musculus chromosome 12, clone RP23-300E12, complete sequence
          Length = 194600

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 192    agaagccacctccacctccc 211
              ||||||||||||||||||||
Sbjct: 166693 agaagccacctccacctccc 166712
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>emb|AL139139.9| Human DNA sequence from clone RP5-1052I5 on chromosome 1p22.1-31.1
             Contains gene LOC339524 and the 3' end of a variant of the
             HS2ST1 gene for heparan sulfate 2-O-sulfotransferase 1
             (FLJ11317), complete sequence
          Length = 82299

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 138   tctaggcagagcaaccaagt 157
             ||||||||||||||||||||
Sbjct: 34853 tctaggcagagcaaccaagt 34834
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>gb|AC092908.9| Homo sapiens 3q BAC RP11-757I12 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 174257

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 192   agaagccacctccacctccc 211
             ||||||||||||||||||||
Sbjct: 22073 agaagccacctccacctccc 22054
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>emb|AL939129.1|SCO939129 Streptomyces coelicolor A3(2) complete genome; segment 26/29
          Length = 292200

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 346    gctacggcgaccgcgactcc 365
              ||||||||||||||||||||
Sbjct: 186837 gctacggcgaccgcgactcc 186818
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>emb|AJ606472.1| Fagus sylvatica mRNA for serine/threonine protein kinase (pk5 gene)
          Length = 1463

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 447 tttaatggtgatcctctttg 466
           ||||||||||||||||||||
Sbjct: 973 tttaatggtgatcctctttg 954
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>gb|AC055788.7| Homo sapiens chromosome 8, clone RP11-252H14, complete sequence
          Length = 145570

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 493   ttcctggcattttgggatgt 512
             ||||||||||||||||||||
Sbjct: 87819 ttcctggcattttgggatgt 87838
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>gb|AC012031.17| Homo sapiens 3 BAC RP11-91K9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 157639

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 114   ttcaaacagaaaaagtaaac 133
             ||||||||||||||||||||
Sbjct: 78540 ttcaaacagaaaaagtaaac 78521
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>gb|AC004033.3| Homo sapiens Chromosome 22q11.2 PAC Clone p_m11 In BCRL2-GGT Region,
             complete sequence
          Length = 145356

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 200   cctccacctccctgaggctg 219
             ||||||||||||||||||||
Sbjct: 22179 cctccacctccctgaggctg 22198
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>gb|AC005500.2| Homo sapiens 22q11 PAC Clone Clone p52f6 In DGCR Region, complete
              sequence
          Length = 192592

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 200    cctccacctccctgaggctg 219
              ||||||||||||||||||||
Sbjct: 134528 cctccacctccctgaggctg 134547
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>gb|AC007731.16| Homo sapiens chromosome 22 clone b562f10 map 22q11, complete sequence
          Length = 182617

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 200    cctccacctccctgaggctg 219
              ||||||||||||||||||||
Sbjct: 139588 cctccacctccctgaggctg 139607
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>gb|AC158782.5| Mus musculus chromosome 5, clone RP23-134H19, complete sequence
          Length = 228458

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      aattattatatgttcacttt 20
              ||||||||||||||||||||
Sbjct: 208352 aattattatatgttcacttt 208333
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>gb|AC024323.4|AC024323 Homo sapiens, clone RP11-28O13, complete sequence
          Length = 137242

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 196   gccacctccacctccctgag 215
             ||||||||||||||||||||
Sbjct: 12403 gccacctccacctccctgag 12422
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>gb|AC104946.4| Homo sapiens chromosome 8, clone RP11-946L20, complete sequence
          Length = 200292

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 196    gccacctccacctccctgag 215
              ||||||||||||||||||||
Sbjct: 190189 gccacctccacctccctgag 190208
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>emb|AJ606473.1| Fagus sylvatica partial mRNA for serine/threonine protein kinase
           (pk6 gene)
          Length = 1162

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 447 tttaatggtgatcctctttg 466
           ||||||||||||||||||||
Sbjct: 432 tttaatggtgatcctctttg 413
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>emb|X80457.1|MMHMG1 M.musculus HMG1 gene
          Length = 2547

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 1    aattattatatgttcacttt 20
            ||||||||||||||||||||
Sbjct: 1476 aattattatatgttcacttt 1495
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>gb|AC099724.7| Mus musculus chromosome 18, clone RP23-458P14, complete sequence
          Length = 183108

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    aacaagtctaccacaatgca 64
             ||||||||||||||||||||
Sbjct: 38034 aacaagtctaccacaatgca 38015
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>emb|CR974580.6| Mouse DNA sequence from clone RP23-97P6 on chromosome 12, complete
             sequence
          Length = 197896

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 192   agaagccacctccacctccc 211
             ||||||||||||||||||||
Sbjct: 52214 agaagccacctccacctccc 52195
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>dbj|AP005627.1| Homo sapiens genomic DNA, chromosome 8q23, clone:KB229B8, complete
             sequence
          Length = 95577

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 196   gccacctccacctccctgag 215
             ||||||||||||||||||||
Sbjct: 63613 gccacctccacctccctgag 63594
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>emb|AL672002.14| Mouse DNA sequence from clone RP23-252M19 on chromosome X, complete
              sequence
          Length = 225712

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 121    agaaaaagtaaaccatgtct 140
              ||||||||||||||||||||
Sbjct: 175532 agaaaaagtaaaccatgtct 175513
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>emb|AL845162.9| Mouse DNA sequence from clone RP23-35I8 on chromosome 2, complete
             sequence
          Length = 189829

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 201   ctccacctccctgaggctgc 220
             ||||||||||||||||||||
Sbjct: 34739 ctccacctccctgaggctgc 34720
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>emb|AL806532.10| Mouse DNA sequence from clone RP23-387D16 on chromosome X, complete
             sequence
          Length = 209714

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 197   ccacctccacctccctgaggctgc 220
             ||||||||| ||||||||||||||
Sbjct: 92534 ccacctccaactccctgaggctgc 92557
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>dbj|AB012629.1| Adiantum capillus-veneris CRY1 gene for blue-light photoreceptor,
            complete cds
          Length = 3551

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 452  tggtgatcctctttgggggt 471
            ||||||||||||||||||||
Sbjct: 1393 tggtgatcctctttgggggt 1374
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>dbj|AB012626.1| Adiantum capillus-veneris CRY1 mRNA for blue-light photoreceptor,
           complete cds
          Length = 2611

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 452 tggtgatcctctttgggggt 471
           ||||||||||||||||||||
Sbjct: 763 tggtgatcctctttgggggt 744


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,477,972
Number of Sequences: 3902068
Number of extensions: 5477972
Number of successful extensions: 112560
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 112471
Number of HSP's gapped (non-prelim): 89
length of query: 586
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 563
effective length of database: 17,143,297,704
effective search space: 9651676607352
effective search space used: 9651676607352
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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