ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags5o11 |
|---|---|
| Clone Library Name | barley_pub |
>GLGB_MAIZE (Q08047) 1,4-alpha-glucan branching enzyme IIB, chloroplast| precursor (EC 2.4.1.18) (Starch branching enzyme IIB) (Q-enzyme) Length = 799 Score = 79.0 bits (193), Expect = 8e-15 Identities = 37/54 (68%), Positives = 41/54 (75%) Frame = -3 Query: 542 YKVALDSDDALFGGFSRLDHDVDYFTXEHPHDNRPRSFSVYTPSRTAVVYALTE 381 YKV LDSD LFGGFSR+ H ++FT + HDNRP SFSVYTPSRT VVYA E Sbjct: 746 YKVVLDSDAGLFGGFSRIHHAAEHFTADCSHDNRPYSFSVYTPSRTCVVYAPVE 799
>GLGB_HORSE (Q6EAS5) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) (Brancher enzyme) Length = 699 Score = 60.1 bits (144), Expect = 4e-09 Identities = 25/50 (50%), Positives = 35/50 (70%) Frame = -3 Query: 545 KYKVALDSDDALFGGFSRLDHDVDYFTXEHPHDNRPRSFSVYTPSRTAVV 396 K+K+ LDSD A +GG RLDH+ D+F+ + H+ RP S VY PSR A++ Sbjct: 642 KFKIVLDSDAAEYGGHQRLDHNTDFFSEPYEHNERPSSLLVYIPSRVALI 691
>GLGB_ORYSA (Q01401) 1,4-alpha-glucan branching enzyme, chloroplast precursor| (EC 2.4.1.18) (Starch branching enzyme) (Q-enzyme) Length = 820 Score = 58.5 bits (140), Expect = 1e-08 Identities = 30/59 (50%), Positives = 36/59 (61%), Gaps = 8/59 (13%) Frame = -3 Query: 545 KYKVALDSDDALFGGFSRLDHDVDYFTX--------EHPHDNRPRSFSVYTPSRTAVVY 393 KY+VALDSD +FGG R+ HDVD+FT E +NRP SF V +P RT V Y Sbjct: 697 KYRVALDSDALVFGGHGRVGHDVDHFTSPEGMPGVPETNFNNRPNSFKVLSPPRTCVAY 755
>GLGB_HUMAN (Q04446) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) (Brancher enzyme) Length = 702 Score = 58.2 bits (139), Expect = 2e-08 Identities = 25/50 (50%), Positives = 33/50 (66%) Frame = -3 Query: 545 KYKVALDSDDALFGGFSRLDHDVDYFTXEHPHDNRPRSFSVYTPSRTAVV 396 K+K+ LDSD A +GG RLDH D+F+ H+ RP S VY PSR A++ Sbjct: 645 KFKIVLDSDAAEYGGHQRLDHSTDFFSEAFEHNGRPYSLLVYIPSRVALI 694
>GLGB_MOUSE (Q9D6Y9) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) (Brancher enzyme) Length = 702 Score = 57.8 bits (138), Expect = 2e-08 Identities = 25/50 (50%), Positives = 33/50 (66%) Frame = -3 Query: 545 KYKVALDSDDALFGGFSRLDHDVDYFTXEHPHDNRPRSFSVYTPSRTAVV 396 K+K+ LDSD A +GG RLDH+ +YF H+ RP S VY PSR A++ Sbjct: 645 KFKIVLDSDAAEYGGHQRLDHNTNYFAEAFEHNGRPYSLLVYIPSRVALI 694
>GLGB_FELCA (Q6T308) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) (Brancher enzyme) Length = 699 Score = 51.2 bits (121), Expect = 2e-06 Identities = 20/50 (40%), Positives = 32/50 (64%) Frame = -3 Query: 545 KYKVALDSDDALFGGFSRLDHDVDYFTXEHPHDNRPRSFSVYTPSRTAVV 396 K+++ LD+D A +GG RLDH ++F+ H+ RP S VY P+R ++ Sbjct: 642 KFRIVLDTDAAEYGGHQRLDHSTEFFSQPFKHNERPCSLLVYIPNRVGLI 691
>GLGB_EMENI (Q9Y8H3) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) Length = 686 Score = 50.4 bits (119), Expect = 3e-06 Identities = 23/54 (42%), Positives = 31/54 (57%) Frame = -3 Query: 542 YKVALDSDDALFGGFSRLDHDVDYFTXEHPHDNRPRSFSVYTPSRTAVVYALTE 381 Y+V LD+DD FGG R+D +FT + + R VY P+RTA+ AL E Sbjct: 631 YRVVLDTDDQAFGGLGRIDQGTRFFTTDMEWNGRRNYLQVYIPTRTALALALEE 684
>GLGB_CANGA (Q6FJV0) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) Length = 706 Score = 48.9 bits (115), Expect = 9e-06 Identities = 22/49 (44%), Positives = 32/49 (65%) Frame = -3 Query: 542 YKVALDSDDALFGGFSRLDHDVDYFTXEHPHDNRPRSFSVYTPSRTAVV 396 YK+ L++D A FGG +R+D ++FT + +NR VY PSRTA+V Sbjct: 653 YKIVLNTDRAEFGGHNRIDEAQEFFTTDLEWNNRRNFIQVYIPSRTAIV 701
>GLGB_YEAST (P32775) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) Length = 704 Score = 48.5 bits (114), Expect = 1e-05 Identities = 23/54 (42%), Positives = 33/54 (61%) Frame = -3 Query: 542 YKVALDSDDALFGGFSRLDHDVDYFTXEHPHDNRPRSFSVYTPSRTAVVYALTE 381 Y + L+SD A FGG +R++ ++FT + +NR VY PSR A+V AL E Sbjct: 651 YHIVLNSDRAEFGGHNRINESSEFFTTDLEWNNRKNFLQVYIPSRVALVLALKE 704
>GLGB_ASPOR (Q96VA4) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) Length = 689 Score = 47.0 bits (110), Expect = 4e-05 Identities = 22/54 (40%), Positives = 32/54 (59%) Frame = -3 Query: 542 YKVALDSDDALFGGFSRLDHDVDYFTXEHPHDNRPRSFSVYTPSRTAVVYALTE 381 Y++ LD+DD FGG +R + +FT + + R VY P+RTA+V AL E Sbjct: 634 YRIVLDTDDPAFGGLNRNLKETRFFTTDLSWNGRSNFLQVYIPTRTALVLALEE 687
>GLGB_GLOIN (Q8NKE1) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) Length = 683 Score = 46.2 bits (108), Expect = 6e-05 Identities = 20/50 (40%), Positives = 27/50 (54%) Frame = -3 Query: 545 KYKVALDSDDALFGGFSRLDHDVDYFTXEHPHDNRPRSFSVYTPSRTAVV 396 KY +AL++D +FGG R+D + Y + H D R VY P R A V Sbjct: 630 KYSIALNTDRKIFGGHDRIDESISYHSQPHEWDGRKNYIQVYIPCRVAPV 679
>GLGB_CRYNE (Q5KP87) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) Length = 682 Score = 45.8 bits (107), Expect = 8e-05 Identities = 23/53 (43%), Positives = 30/53 (56%) Frame = -3 Query: 545 KYKVALDSDDALFGGFSRLDHDVDYFTXEHPHDNRPRSFSVYTPSRTAVVYAL 387 +YKV L SD+ FGG +R+D YFT + R VY+PSRT +V L Sbjct: 630 EYKVILTSDETRFGGHNRIDMGGRYFTTPMEWNGRKNWLQVYSPSRTVLVLGL 682
>GLGB_KLULA (Q6CX53) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) Length = 719 Score = 41.6 bits (96), Expect = 0.001 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Frame = -3 Query: 542 YKVALDSDDALFGGFSRLDHDVD-YFTXEHPHDNRPRSFSVYTPSRTAVVYAL 387 Y++ L+SD +GG+ R+D YFT + + R VY P+RTA+V AL Sbjct: 659 YRIVLNSDKHEYGGWDRIDESQSKYFTTDLKWNERNNFIQVYIPNRTALVLAL 711
>GLGB_YARLI (Q6CCT1) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) Length = 691 Score = 40.8 bits (94), Expect = 0.003 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Frame = -3 Query: 542 YKVALDSDDALFGGFSRLDHD-VDYFTXEHPHDNRPRSFSVYTPSRTAVVYA 390 Y + LDSD FGGF R+DH+ T + R +Y PSR A+V+A Sbjct: 632 YTLVLDSDSPEFGGFGRIDHEKTRCHTEPLEWNGRANCMHIYIPSRVALVFA 683
>GLGB_SOLTU (P30924) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Starch| branching enzyme) (Q-enzyme) Length = 861 Score = 39.7 bits (91), Expect = 0.006 Identities = 18/27 (66%), Positives = 20/27 (74%) Frame = -3 Query: 545 KYKVALDSDDALFGGFSRLDHDVDYFT 465 KY+VALDSD FGG R HDVD+FT Sbjct: 717 KYRVALDSDAWEFGGHGRTGHDVDHFT 743
>GLGB_DEBHA (Q6BXN1) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) Length = 711 Score = 37.4 bits (85), Expect = 0.028 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 7/61 (11%) Frame = -3 Query: 542 YKVALDSDDALFGGFSRLDHD-------VDYFTXEHPHDNRPRSFSVYTPSRTAVVYALT 384 Y++ L+SD FGG R++ + +FT ++R + Y PSRTA+V + Sbjct: 648 YQIVLNSDSLSFGGHGRIEETNKETGEKLQFFTNNERWNDRSNALFCYIPSRTAIVLQVK 707 Query: 383 E 381 E Sbjct: 708 E 708
>GLGB_ASHGO (Q757Q6) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) Length = 703 Score = 36.6 bits (83), Expect = 0.047 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Frame = -3 Query: 542 YKVALDSDDALFGGFSRLDHDVDYF-TXEHPHDNRPRSFSVYTPSRTAVVYA 390 Y++ L+SD FGG R++ + F T + + R VY PSRTA+V A Sbjct: 649 YRIILNSDREEFGGHRRIEEENSVFHTTDLEWNGRRNFIQVYLPSRTALVLA 700
>Y455_MYCPN (P75328) Hypothetical protein MG320 homolog (H08_orf287)| Length = 287 Score = 30.4 bits (67), Expect = 3.4 Identities = 11/25 (44%), Positives = 18/25 (72%) Frame = +1 Query: 241 SIWGRGTIPSQSRRLEQSRTVARRF 315 ++WG +PSQ RR +Q++T+ R F Sbjct: 148 TVWGLSALPSQQRRYQQTQTLFRIF 172
>SEM4C_MOUSE (Q64151) Semaphorin-4C precursor (Semaphorin I) (Sema I)| (Semaphorin C-like 1) (M-Sema F) Length = 834 Score = 30.4 bits (67), Expect = 3.4 Identities = 16/47 (34%), Positives = 24/47 (51%) Frame = +2 Query: 305 PVASLTIHELTGVLFLPCNKQLLVLTL*GHTRPQFCSECTPRKSVAC 445 PV SL + + VLF QL+ L+L T+ +FC +C + C Sbjct: 471 PVESLVLSQSKKVLFAGSRSQLVQLSLADCTKYRFCVDCVLARDPYC 517
>METL6_MOUSE (Q8BVH9) Methyltransferase-like protein 6 (EC 2.1.1.-)| Length = 282 Score = 30.0 bits (66), Expect = 4.4 Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 11/60 (18%) Frame = -1 Query: 379 KNQQLFVTRQKENS-----------SELVDCERSDGQRSETVLTAVIGRGSCLFPRC*ED 233 KN LF R N EL C +GQ+ T+L A G G+CLFP ED Sbjct: 43 KNWDLFYKRNSTNFFKDRHWTTREFEELRSCREYEGQKL-TLLEAGCGVGNCLFPLLEED 101
>UL03_HHV2H (P28279) Nuclear phosphoprotein UL3| Length = 233 Score = 29.6 bits (65), Expect = 5.8 Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 15/81 (18%) Frame = -1 Query: 526 TLMMHSLVDSAGLIMMSTTSXPNIRMTTGHALSRCTLRAEL---------------RSCM 392 TL M S +D G ++ T ++R++ CT + R+C+ Sbjct: 97 TLFMVSSIDELGRRQLTDTIRKDLRLSLAKFSIACTKTSSFSGTAARQRKRGAPPQRTCV 156 Query: 391 PLQSKNQQLFVTRQKENSSEL 329 P +K+ Q+FV ++ N++++ Sbjct: 157 PRSNKSLQMFVLCKRANAAQV 177
>UL03_HHV23 (P0C012) Nuclear phosphoprotein UL3| Length = 233 Score = 29.6 bits (65), Expect = 5.8 Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 15/81 (18%) Frame = -1 Query: 526 TLMMHSLVDSAGLIMMSTTSXPNIRMTTGHALSRCTLRAEL---------------RSCM 392 TL M S +D G ++ T ++R++ CT + R+C+ Sbjct: 97 TLFMVSSIDELGRRQLTDTIRKDLRLSLAKFSIACTKTSSFSGTAARQRKRGAPPQRTCV 156 Query: 391 PLQSKNQQLFVTRQKENSSEL 329 P +K+ Q+FV ++ N++++ Sbjct: 157 PRSNKSLQMFVLCKRANAAQV 177
>Y320_MYCGE (P47562) Hypothetical protein MG320| Length = 286 Score = 29.3 bits (64), Expect = 7.6 Identities = 10/21 (47%), Positives = 16/21 (76%) Frame = +1 Query: 241 SIWGRGTIPSQSRRLEQSRTV 303 S+WG +PSQ RR +Q++T+ Sbjct: 149 SVWGLSALPSQKRRYQQTQTL 169
>NUOE_MYCTU (P65573) NADH-quinone oxidoreductase chain E (EC 1.6.99.5) (NADH| dehydrogenase I, chain E) (NDH-1, chain E) Length = 252 Score = 29.3 bits (64), Expect = 7.6 Identities = 26/77 (33%), Positives = 35/77 (45%) Frame = -1 Query: 391 PLQSKNQQLFVTRQKENSSELVDCERSDGQRSETVLTAVIGRGSCLFPRC*EDQMDR*LA 212 P+ N + F + E++ ELVD RSD ++ T RG+ P C Q R LA Sbjct: 163 PVVMVNWEFFDNQTPESARELVDSLRSDTPKAPT-------RGA---PLCGFRQTSRILA 212 Query: 211 GEPSFSSDLRKKMDGPG 161 G P D + GPG Sbjct: 213 GLPDQRPD--EGQGGPG 227
>NUOE_MYCBO (P65574) NADH-quinone oxidoreductase chain E (EC 1.6.99.5) (NADH| dehydrogenase I, chain E) (NDH-1, chain E) Length = 252 Score = 29.3 bits (64), Expect = 7.6 Identities = 26/77 (33%), Positives = 35/77 (45%) Frame = -1 Query: 391 PLQSKNQQLFVTRQKENSSELVDCERSDGQRSETVLTAVIGRGSCLFPRC*EDQMDR*LA 212 P+ N + F + E++ ELVD RSD ++ T RG+ P C Q R LA Sbjct: 163 PVVMVNWEFFDNQTPESARELVDSLRSDTPKAPT-------RGA---PLCGFRQTSRILA 212 Query: 211 GEPSFSSDLRKKMDGPG 161 G P D + GPG Sbjct: 213 GLPDQRPD--EGQGGPG 227
>TDP2_HUMAN (Q14188) Transcription factor Dp-2 (E2F dimerization partner 2)| Length = 446 Score = 28.9 bits (63), Expect = 9.9 Identities = 17/64 (26%), Positives = 28/64 (43%) Frame = -1 Query: 493 GLIMMSTTSXPNIRMTTGHALSRCTLRAELRSCMPLQSKNQQLFVTRQKENSSELVDCER 314 GL++ ST S N+ +TTG L + ++ L + Q ++SS C Sbjct: 362 GLLLNSTQSVSNLDLTTGATLPQSSVNQGLCLDAEVALATGQFLAPNSHQSSSAASHCSE 421 Query: 313 SDGQ 302 S G+ Sbjct: 422 SRGE 425
>HMCS_CAEEL (P54871) Hydroxymethylglutaryl-CoA synthase (EC 2.3.3.10) (HMG-CoA| synthase) (3-hydroxy-3-methylglutaryl coenzyme A synthase) Length = 462 Score = 28.9 bits (63), Expect = 9.9 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = -3 Query: 530 LDSDDALFGGFSRLDHDVDYFTXEHPHDNR 441 +D +A FGG L H +D+ T HP D + Sbjct: 118 VDIKNACFGGAQALLHAIDWVTVNHPLDKK 147 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,229,675 Number of Sequences: 219361 Number of extensions: 1622689 Number of successful extensions: 3788 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 3676 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3786 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4373119116 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
