>RYK2_DROME (Q9V422) Tyrosine-protein kinase Dnt precursor (EC 2.7.10.1)|
           (Protein doughnut)
          Length = 584

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 19/73 (26%), Positives = 32/73 (43%)
 Frame = -1

Query: 482 CQCLLSIRCLSLPVNKKEISRHGGTPKLHNSVARSCSVCHARRPPKLHLLGAIAGLLPSS 303
           C  L+   C+    NK++  +HGG P   +S  R  +      PP    +G+ A + PS 
Sbjct: 224 CLLLMIAYCVKGAANKRQHHQHGGQPMRTSSFQRLNT-----HPPCQSSMGSAAYMTPSI 278

Query: 302 *VQLMSSKVGEKI 264
              +  S +  K+
Sbjct: 279 IAPIHGSSLPRKV 291

>TAP1_HUMAN (Q03518) Antigen peptide transporter 1 (APT1) (Peptide transporter|
           TAP1) (ATP-binding cassette sub-family B member 2)
           (Peptide transporter PSF1) (Peptide supply factor 1)
           (PSF-1) (Peptide transporter involved in antigen
           processing 1)
          Length = 748

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 18/56 (32%), Positives = 21/56 (37%)
 Frame = +2

Query: 269 SHPPYLTLIVPKKMAADRLWHPVDGAWVAGEHDKRSNSVRPNYGAWVSLHAVRSLF 436
           SHP    +     + A  LWH +   WV G      N VR   G   S     SLF
Sbjct: 135 SHPTAFVVSYAAALPAAALWHKLGSLWVPGGQGGSGNPVRRLLGCLGSETRRLSLF 190

>TAP1_GORGO (Q28433) Antigen peptide transporter 1 (APT1) (Peptide transporter|
           TAP1) (ATP-binding cassette sub-family B member 2)
          Length = 748

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 18/56 (32%), Positives = 21/56 (37%)
 Frame = +2

Query: 269 SHPPYLTLIVPKKMAADRLWHPVDGAWVAGEHDKRSNSVRPNYGAWVSLHAVRSLF 436
           SHP    +     + A  LWH +   WV G      N VR   G   S     SLF
Sbjct: 135 SHPSAFVVSYAAALPAAALWHKLGSLWVPGGQGGSGNPVRRLLGCLGSETRRLSLF 190


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,390,412
Number of Sequences: 219361
Number of extensions: 1391223
Number of successful extensions: 2789
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2786
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3696665728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)