ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags6c22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_478772.1| Oryza sativa (japonica cultivar-group), mRNA 488 e-134
2dbj|AK065242.1| Oryza sativa (japonica cultivar-group) cDNA clon... 464 e-127
3gb|AY108240.1| Zea mays PCO100302 mRNA sequence 391 e-105
4dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 155 2e-34
5dbj|AP005908.3| Oryza sativa (japonica cultivar-group) genomic D... 155 2e-34
6emb|X72384.1|DCD2NLP D.carota D2 mRNA for glycine rich protein 58 4e-05
7emb|AJ133751.1|SOL133751 Spinacia oleracea mRNA for chloroplast ... 58 4e-05
8gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome 46 0.15
9emb|CR450763.5| Zebrafish DNA sequence from clone CH211-180M24, ... 44 0.59
10ref|NM_116184.2| Arabidopsis thaliana unknown protein AT3G63190 ... 42 2.3
11gb|AC103604.4| Mus musculus chromosome 3, clone RP23-95A20, comp... 42 2.3
12gb|AY092982.1| Arabidopsis thaliana putative protein (At3g63190)... 42 2.3
13gb|AY056778.1| Arabidopsis thaliana AT3g63190/F16M2_40 mRNA, com... 42 2.3
14gb|AC105155.9| Mus musculus chromosome 3, clone RP24-346C8, comp... 42 2.3
15gb|AC159229.2| Mus musculus BAC clone RP24-351I2 from chromosome... 42 2.3
16gb|AF372883.1|AF372883 Arabidopsis thaliana AT3g63190/F16M2_40 m... 42 2.3
17emb|BX822699.1|CNS0A72X Arabidopsis thaliana Full-length cDNA Co... 42 2.3
18emb|BX825146.1|CNS0A6FZ Arabidopsis thaliana Full-length cDNA Co... 42 2.3
19gb|BT002678.1| Arabidopsis thaliana At3g63190/F16M2_40 gene, com... 42 2.3
20gb|AC131036.4| Mus musculus chromosome 5, clone RP23-358D12, com... 40 9.3
21gb|AC153558.7| Mus musculus 10 BAC RP23-367D2 (Roswell Park Canc... 40 9.3
22ref|XM_956989.1| Neurospora crassa OR74A hypothetical protein (N... 40 9.3
23ref|XM_328654.1| Neurospora crassa OR74A hypothetical protein (N... 40 9.3
24gb|AC111010.5| Mus musculus BAC clone RP23-419L21 from chromosom... 40 9.3
25gb|AC166290.7| Mus musculus BAC RP23-14P17 (Roswell Park Cancer... 40 9.3
26gb|AC163275.4| Mus musculus chromosome 5, clone RP23-458G12, com... 40 9.3
27ref|XM_742778.1| Aspergillus fumigatus Af293 tRNA-splicing endon... 40 9.3
28gb|AC121590.2| Mus musculus BAC clone RP23-281L22 from 2, comple... 40 9.3
29gb|AC110540.7| Mus musculus chromosome 3, clone RP23-105B8, comp... 40 9.3
30gb|AC160063.12| Mus musculus 10 BAC RP24-502H14 (Roswell Park Ca... 40 9.3
31gb|AC154993.9| Mus musculus chromosome 3, clone RP23-246L14, com... 40 9.3
32emb|AL607062.10| Human DNA sequence from clone RP11-439F7 on chr... 40 9.3
33gb|AF306784.1| Cherax quadricarinatus vitellogenin (vg) mRNA, co... 40 9.3
34gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 40 9.3
35gb|AC118290.7| Rattus norvegicus 2 BAC CH230-366D18 (Children's ... 40 9.3
36emb|BX571658.1| Wolinella succinogenes, complete genome; segment... 40 9.3
37emb|BX323864.8| Zebrafish DNA sequence from clone CH211-218K4 in... 40 9.3
38gb|AC122725.30| Medicago truncatula clone mth2-4c11, complete se... 40 9.3
39emb|BX511254.6| Zebrafish DNA sequence from clone DKEYP-90G2 in ... 40 9.3
40gb|AC010863.10| Homo sapiens chromosome 10 clone RP11-346E7, com... 40 9.3
41gb|AC007518.32| Mus musculus chromosome , clone CT7-345D4, compl... 40 9.3
42gb|AC106799.3| Homo sapiens chromosome 5 clone RP11-445O3, compl... 40 9.3
43dbj|AK138983.1| Mus musculus adult male aorta and vein cDNA, RIK... 40 9.3
44gb|AC026711.6| Homo sapiens chromosome 5 clone CTD-2093E18, comp... 40 9.3
45gb|AC153884.1| Mus musculus 6 BAC RP23-476E22 (Roswell Park Can... 40 9.3
46dbj|BS000019.1| Pan troglodytes chromosome 22 clone:PTB-023I17, ... 40 9.3
47gb|AY112589.1| Zea mays CL61174_1 mRNA sequence 40 9.3
48gb|AC153561.5| Mus musculus 10 BAC RP23-426E11 (Roswell Park Can... 40 9.3
49gb|AC145738.4| Mus musculus BAC clone RP24-293H7 from 3, complet... 40 9.3
50gb|AC147968.2| Gallus gallus BAC clone CH261-119F24 from chromos... 40 9.3
51emb|AL928700.7| Mouse DNA sequence from clone RP23-388J20 on chr... 40 9.3
52emb|AL928543.5| Mouse DNA sequence from clone RP23-345P1 on chro... 40 9.3
53emb|AL845165.4| Mouse DNA sequence from clone RP23-281N9 on chro... 40 9.3 
>ref|XM_478772.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1227

 Score =  488 bits (246), Expect = e-134
 Identities = 399/450 (88%)
 Strand = Plus / Minus

                                                                       
Query: 228 ctgttccttctgcttttggatggcttcaacctttttcatgtactcgtctgtgattttttg 287
           ||||||||||||||||||||| ||||| | |||||||||||||||||| || | ||||||
Sbjct: 880 ctgttccttctgcttttggatagcttcgatctttttcatgtactcgtcagtaactttttg 821

                                                                       
Query: 288 tagatcggctgataaatccttcacattatcttcagaaagtttcttttccttctctagctt 347
           |||||| || || ||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 820 tagatcagcggacaaatccttcacgttatcttcagaaagtttcttttccttctcaagctt 761

                                                                       
Query: 348 atcataggctttgattgcgtctcgtcttatgtttctgatagcaaccttgccttcttcaga 407
           ||| || |||||||| || |||| ||||||||| || |||||||||||||||||||||| 
Sbjct: 760 atcgtaagctttgatggcatctcttcttatgttccttatagcaaccttgccttcttcagc 701

                                                                       
Query: 408 taacttagctacggtttttgtcatctcctttctgcgatcagatgtcaatggtgggacagt 467
           ||| ||||| || ||||||| ||  ||||||||||| ||||| ||||||||||| |||||
Sbjct: 700 taatttagcaacagtttttgccaattcctttctgcggtcagaagtcaatggtggaacagt 641

                                                                       
Query: 468 gactcgtatcacttctccatcattgcttggtgttaccccaatatttgcagcaactatagc 527
           |||||| |||||||||||||||||||||||||| ||||| | ||||||||||||||| | 
Sbjct: 640 gactcgaatcacttctccatcattgcttggtgtaacccccagatttgcagcaactattgt 581

                                                                       
Query: 528 tttctcaatgagcttgaggcaagacttgtcatatggctggataagaagagaagtcgcatc 587
           ||||||||||||||||||| | || |||||||||||||| ||||| |||||||| |||||
Sbjct: 580 tttctcaatgagcttgagggaggatttgtcatatggctgaataaggagagaagttgcatc 521

                                                                       
Query: 588 tggagtatttacttgtgcaatagtcttcaagtttacaggagttccatagtactcaacctc 647
           |||||| ||||  ||||| ||  |||||||||| || ||||||||||| |||||||||||
Sbjct: 520 tggagtgtttatctgtgcgatgctcttcaagttcactggagttccataatactcaacctc 461

                                         
Query: 648 aatcctgtcaagcatagacgggtttgcccg 677
           |||||||||||||||||  |||||||||||
Sbjct: 460 aatcctgtcaagcatagctgggtttgcccg 431
to top
>dbj|AK065242.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002I12, full
           insert sequence
          Length = 1226

 Score =  464 bits (234), Expect = e-127
 Identities = 397/450 (88%), Gaps = 1/450 (0%)
 Strand = Plus / Minus

                                                                       
Query: 228 ctgttccttctgcttttggatggcttcaacctttttcatgtactcgtctgtgattttttg 287
           ||||||||||||||||||||| ||||| | |||||||||||||||||| || | |||| |
Sbjct: 879 ctgttccttctgcttttggatagcttcgatctttttcatgtactcgtcagtaactttt-g 821

                                                                       
Query: 288 tagatcggctgataaatccttcacattatcttcagaaagtttcttttccttctctagctt 347
           |||||| || || ||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 820 tagatcagcggacaaatccttcacgttatcttcagaaagtttcttttccttctcaagctt 761

                                                                       
Query: 348 atcataggctttgattgcgtctcgtcttatgtttctgatagcaaccttgccttcttcaga 407
           ||| || ||| |||| || |||| ||||||||| || |||||||||||||||||||||| 
Sbjct: 760 atcgtaagctatgatggcatctcttcttatgttccttatagcaaccttgccttcttcagc 701

                                                                       
Query: 408 taacttagctacggtttttgtcatctcctttctgcgatcagatgtcaatggtgggacagt 467
           ||| ||||| || ||||||| ||  ||||||||||| ||||| ||||||||||| |||||
Sbjct: 700 taatttagcaacagtttttgccaattcctttctgcggtcagaagtcaatggtggaacagt 641

                                                                       
Query: 468 gactcgtatcacttctccatcattgcttggtgttaccccaatatttgcagcaactatagc 527
           |||||| |||||||||||||||||||||||||| ||||| | ||||||||||||||| | 
Sbjct: 640 gactcgaatcacttctccatcattgcttggtgtaacccccagatttgcagcaactattgt 581

                                                                       
Query: 528 tttctcaatgagcttgaggcaagacttgtcatatggctggataagaagagaagtcgcatc 587
           ||||||||||||||||||| | || |||||||||||||| ||||| |||||||| |||||
Sbjct: 580 tttctcaatgagcttgagggaggatttgtcatatggctgaataaggagagaagttgcatc 521

                                                                       
Query: 588 tggagtatttacttgtgcaatagtcttcaagtttacaggagttccatagtactcaacctc 647
           |||||| ||||  ||||| ||  |||||||||| || ||||||||||| |||||||||||
Sbjct: 520 tggagtgtttatctgtgcgatgctcttcaagttcactggagttccataatactcaacctc 461

                                         
Query: 648 aatcctgtcaagcatagacgggtttgcccg 677
           |||||||||||||||||  |||||||||||
Sbjct: 460 aatcctgtcaagcatagctgggtttgcccg 431
to top
>gb|AY108240.1| Zea mays PCO100302 mRNA sequence
          Length = 776

 Score =  391 bits (197), Expect = e-105
 Identities = 353/405 (87%)
 Strand = Plus / Minus

                                                                       
Query: 258 ctttttcatgtactcgtctgtgattttttgtagatcggctgataaatccttcacattatc 317
           |||||||||||||||||| |||| ||||||||| || ||||| ||||| |||||||| ||
Sbjct: 775 ctttttcatgtactcgtccgtgactttttgtaggtcagctgacaaatctttcacattgtc 716

                                                                       
Query: 318 ttcagaaagtttcttttccttctctagcttatcataggctttgattgcgtctcgtcttat 377
           ||||||||| ||||||||||||| ||| ||||| || ||||||||||| |||| ||||||
Sbjct: 715 ttcagaaagcttcttttccttctgtagtttatcgtaagctttgattgcatctcttcttat 656

                                                                       
Query: 378 gtttctgatagcaaccttgccttcttcagataacttagctacggtttttgtcatctcctt 437
           ||| || |||||||||||||| |||||||  || |||||||| || ||||  |  |||||
Sbjct: 655 gttccttatagcaaccttgccatcttcagccaatttagctactgtctttgctaattcctt 596

                                                                       
Query: 438 tctgcgatcagatgtcaatggtgggacagtgactcgtatcacttctccatcattgcttgg 497
           |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 595 tctgcgatcagatgtcaatggtgggacagtcactcgtatcacttctccgtcattgcttgg 536

                                                                       
Query: 498 tgttaccccaatatttgcagcaactatagctttctcaatgagcttgaggcaagacttgtc 557
           ||| || |||| |||||| |||||||||| |||||| || ||||||||||  ||||||||
Sbjct: 535 tgtcacaccaagatttgcggcaactatagttttctcgataagcttgaggcttgacttgtc 476

                                                                       
Query: 558 atatggctggataagaagagaagtcgcatctggagtatttacttgtgcaatagtcttcaa 617
           |||||| || |||||||||||||| |||||||||||  |||  ||||||||  |||||||
Sbjct: 475 atatggttgaataagaagagaagttgcatctggagtgcttatctgtgcaatgctcttcaa 416

                                                        
Query: 618 gtttacaggagttccatagtactcaacctcaatcctgtcaagcat 662
           ||| || |||||||| |||||||| ||||| |||| |||||||||
Sbjct: 415 gttcactggagttccgtagtactcgacctcgatccggtcaagcat 371
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  155 bits (78), Expect = 2e-34
 Identities = 105/114 (92%)
 Strand = Plus / Minus

                                                                            
Query: 434      cctttctgcgatcagatgtcaatggtgggacagtgactcgtatcacttctccatcattgc 493
                |||||||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 22952090 cctttctgcggtcagaagtcaatggtggaacagtgactcgaatcacttctccatcattgc 22952031

                                                                      
Query: 494      ttggtgttaccccaatatttgcagcaactatagctttctcaatgagcttgaggc 547
                ||||||| ||||| | ||||||||||||||| | ||||||||||||||||||||
Sbjct: 22952030 ttggtgtaacccccagatttgcagcaactattgttttctcaatgagcttgaggc 22951977



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 82/94 (87%)
 Strand = Plus / Minus

                                                                            
Query: 553      ttgtcatatggctggataagaagagaagtcgcatctggagtatttacttgtgcaatagtc 612
                |||||||||||||| ||||| |||||||| ||||||||||| ||||  ||||| ||  ||
Sbjct: 22951887 ttgtcatatggctgaataaggagagaagttgcatctggagtgtttatctgtgcgatgctc 22951828

                                                  
Query: 613      ttcaagtttacaggagttccatagtactcaacct 646
                |||||||| || ||||||||||| ||||||||||
Sbjct: 22951827 ttcaagttcactggagttccataatactcaacct 22951794



 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 49/53 (92%)
 Strand = Plus / Minus

                                                                     
Query: 285      ttgtagatcggctgataaatccttcacattatcttcagaaagtttcttttcct 337
                ||||||||| || || ||||||||||| |||||||||||||||||||||||||
Sbjct: 22954166 ttgtagatcagcggacaaatccttcacgttatcttcagaaagtttcttttcct 22954114



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 45/48 (93%)
 Strand = Plus / Minus

                                                                
Query: 228      ctgttccttctgcttttggatggcttcaacctttttcatgtactcgtc 275
                ||||||||||||||||||||| ||||| | ||||||||||||||||||
Sbjct: 22954340 ctgttccttctgcttttggatagcttcgatctttttcatgtactcgtc 22954293



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                   
Query: 643      acctcaatcctgtcaagcatagacgggtttgcccg 677
                ||||||||||||||||||||||  |||||||||||
Sbjct: 22951458 acctcaatcctgtcaagcatagctgggtttgcccg 22951424



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                     
Query: 391      accttgccttcttcagataacttagctacggtttttg 427
                |||||||||||||||| ||| ||||| || |||||||
Sbjct: 22952942 accttgccttcttcagctaatttagcaacagtttttg 22952906
to top
>dbj|AP005908.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1121_A05
          Length = 172668

 Score =  155 bits (78), Expect = 2e-34
 Identities = 105/114 (92%)
 Strand = Plus / Minus

                                                                         
Query: 434   cctttctgcgatcagatgtcaatggtgggacagtgactcgtatcacttctccatcattgc 493
             |||||||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 27304 cctttctgcggtcagaagtcaatggtggaacagtgactcgaatcacttctccatcattgc 27245

                                                                   
Query: 494   ttggtgttaccccaatatttgcagcaactatagctttctcaatgagcttgaggc 547
             ||||||| ||||| | ||||||||||||||| | ||||||||||||||||||||
Sbjct: 27244 ttggtgtaacccccagatttgcagcaactattgttttctcaatgagcttgaggc 27191



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 82/94 (87%)
 Strand = Plus / Minus

                                                                         
Query: 553   ttgtcatatggctggataagaagagaagtcgcatctggagtatttacttgtgcaatagtc 612
             |||||||||||||| ||||| |||||||| ||||||||||| ||||  ||||| ||  ||
Sbjct: 27101 ttgtcatatggctgaataaggagagaagttgcatctggagtgtttatctgtgcgatgctc 27042

                                               
Query: 613   ttcaagtttacaggagttccatagtactcaacct 646
             |||||||| || ||||||||||| ||||||||||
Sbjct: 27041 ttcaagttcactggagttccataatactcaacct 27008



 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 49/53 (92%)
 Strand = Plus / Minus

                                                                  
Query: 285   ttgtagatcggctgataaatccttcacattatcttcagaaagtttcttttcct 337
             ||||||||| || || ||||||||||| |||||||||||||||||||||||||
Sbjct: 29380 ttgtagatcagcggacaaatccttcacgttatcttcagaaagtttcttttcct 29328



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 45/48 (93%)
 Strand = Plus / Minus

                                                             
Query: 228   ctgttccttctgcttttggatggcttcaacctttttcatgtactcgtc 275
             ||||||||||||||||||||| ||||| | ||||||||||||||||||
Sbjct: 29554 ctgttccttctgcttttggatagcttcgatctttttcatgtactcgtc 29507



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                
Query: 643   acctcaatcctgtcaagcatagacgggtttgcccg 677
             ||||||||||||||||||||||  |||||||||||
Sbjct: 26672 acctcaatcctgtcaagcatagctgggtttgcccg 26638



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                  
Query: 391   accttgccttcttcagataacttagctacggtttttg 427
             |||||||||||||||| ||| ||||| || |||||||
Sbjct: 28156 accttgccttcttcagctaatttagcaacagtttttg 28120
to top
>emb|X72384.1|DCD2NLP D.carota D2 mRNA for glycine rich protein
          Length = 946

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 68/81 (83%)
 Strand = Plus / Minus

                                                                       
Query: 297 tgataaatccttcacattatcttcagaaagtttcttttccttctctagcttatcataggc 356
           |||||| ||||||||||||||||| || || || |||||||| || || |||||||||| 
Sbjct: 600 tgataagtccttcacattatcttctgagagctttttttccttttcaagtttatcatagga 541

                                
Query: 357 tttgattgcgtctcgtcttat 377
           ||| || || |||| ||||||
Sbjct: 540 tttaatggcatctcttcttat 520
to top
>emb|AJ133751.1|SOL133751 Spinacia oleracea mRNA for chloroplast ribosome recycling factor
          Length = 1109

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 140/177 (79%)
 Strand = Plus / Minus

                                                                       
Query: 228 ctgttccttctgcttttggatggcttcaacctttttcatgtactcgtctgtgattttttg 287
           |||||| |||||||| | ||| |  |||||||| ||||||||||| || || |  || ||
Sbjct: 824 ctgttctttctgcttgtagatagactcaaccttcttcatgtactcatcggtcaacttctg 765

                                                                       
Query: 288 tagatcggctgataaatccttcacattatcttcagaaagtttcttttccttctctagctt 347
            ||||| || ||||  || |||||||||||||| ||||| || ||||||||||| || ||
Sbjct: 764 cagatcagccgataggtctttcacattatcttccgaaagctttttttccttctcaagttt 705

                                                                    
Query: 348 atcataggctttgattgcgtctcgtcttatgtttctgatagcaaccttgccttcttc 404
            ||||| | ||| |  || |||| ||||||||| || |  |||||||| ||||||||
Sbjct: 704 ttcataagatttcagagcatctcttcttatgttcctcactgcaacctttccttcttc 648



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                   
Query: 613 ttcaagtttacaggagttccatagtactcaacctcaatcc 652
           |||||| | |||||||||||||||||||||||||| ||||
Sbjct: 439 ttcaagctgacaggagttccatagtactcaacctctatcc 400
to top
>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                              
Query: 628     gttccatagtactcaacctcaatcctgtcaagcatagacgggtttgc 674
               ||||||||||| ||||| ||||| || ||||||||||  ||||||||
Sbjct: 1939986 gttccatagtagtcaacttcaattctatcaagcatagctgggtttgc 1939940
to top
>emb|CR450763.5| Zebrafish DNA sequence from clone CH211-180M24, complete sequence
          Length = 97685

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 240   cttttggatggcttcaaccttt 261
             ||||||||||||||||||||||
Sbjct: 13586 cttttggatggcttcaaccttt 13607
to top
>ref|NM_116184.2| Arabidopsis thaliana unknown protein AT3G63190 mRNA, complete cds
          Length = 1235

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                
Query: 301 aaatccttcacattatcttcagaaagtttcttttccttctctagcttatcata 353
           ||||||||||| || ||||| || || ||||| |||||||| || ||||||||
Sbjct: 866 aaatccttcacgttgtcttctgacagcttcttctccttctcgagtttatcata 814
to top
>gb|AC103604.4| Mus musculus chromosome 3, clone RP23-95A20, complete sequence
          Length = 170670

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 519    aactatagctttctcaatgag 539
              |||||||||||||||||||||
Sbjct: 162970 aactatagctttctcaatgag 162950
to top
>gb|AY092982.1| Arabidopsis thaliana putative protein (At3g63190) mRNA, complete
           cds
          Length = 1173

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                
Query: 301 aaatccttcacattatcttcagaaagtttcttttccttctctagcttatcata 353
           ||||||||||| || ||||| || || ||||| |||||||| || ||||||||
Sbjct: 804 aaatccttcacgttgtcttctgacagcttcttctccttctcgagtttatcata 752
to top
>gb|AY056778.1| Arabidopsis thaliana AT3g63190/F16M2_40 mRNA, complete cds
          Length = 1212

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                
Query: 301 aaatccttcacattatcttcagaaagtttcttttccttctctagcttatcata 353
           ||||||||||| || ||||| || || ||||| |||||||| || ||||||||
Sbjct: 866 aaatccttcacgttgtcttctgacagcttcttctccttctcgagtttatcata 814
to top
>gb|AC105155.9| Mus musculus chromosome 3, clone RP24-346C8, complete sequence
          Length = 162298

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 519    aactatagctttctcaatgag 539
              |||||||||||||||||||||
Sbjct: 134142 aactatagctttctcaatgag 134162
to top
>gb|AC159229.2| Mus musculus BAC clone RP24-351I2 from chromosome 12, complete sequence
          Length = 134517

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 167   tcagaaatcttgtggccagtt 187
             |||||||||||||||||||||
Sbjct: 58113 tcagaaatcttgtggccagtt 58133
to top
>gb|AF372883.1|AF372883 Arabidopsis thaliana AT3g63190/F16M2_40 mRNA, complete cds
          Length = 1050

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                
Query: 301 aaatccttcacattatcttcagaaagtttcttttccttctctagcttatcata 353
           ||||||||||| || ||||| || || ||||| |||||||| || ||||||||
Sbjct: 786 aaatccttcacgttgtcttctgacagcttcttctccttctcgagtttatcata 734
to top
>emb|BX822699.1|CNS0A72X Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB59ZB01 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1225

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                
Query: 301 aaatccttcacattatcttcagaaagtttcttttccttctctagcttatcata 353
           ||||||||||| || ||||| || || ||||| |||||||| || ||||||||
Sbjct: 916 aaatccttcacgttgtcttctgacagcttcttctccttctcgagtttatcata 864
to top
>emb|BX825146.1|CNS0A6FZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL15ZF09 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 1062

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                
Query: 301 aaatccttcacattatcttcagaaagtttcttttccttctctagcttatcata 353
           ||||||||||| || ||||| || || ||||| |||||||| || ||||||||
Sbjct: 802 aaatccttcacgttgtcttctgacagcttcttctccttctcgagtttatcata 750
to top
>gb|BT002678.1| Arabidopsis thaliana At3g63190/F16M2_40 gene, complete cds
          Length = 828

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                
Query: 301 aaatccttcacattatcttcagaaagtttcttttccttctctagcttatcata 353
           ||||||||||| || ||||| || || ||||| |||||||| || ||||||||
Sbjct: 737 aaatccttcacgttgtcttctgacagcttcttctccttctcgagtttatcata 685
to top
>gb|AC131036.4| Mus musculus chromosome 5, clone RP23-358D12, complete sequence
          Length = 197112

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 230   gttccttctgcttttggatggctt 253
             ||||| ||||||||||||||||||
Sbjct: 59770 gttccctctgcttttggatggctt 59793
to top
>gb|AC153558.7| Mus musculus 10 BAC RP23-367D2 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 207823

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 629   ttccatagtactcaacctca 648
             ||||||||||||||||||||
Sbjct: 41557 ttccatagtactcaacctca 41538
to top
>ref|XM_956989.1| Neurospora crassa OR74A hypothetical protein (NCU07949.1) partial
            mRNA
          Length = 8481

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 328  ttcttttccttctctagctt 347
            ||||||||||||||||||||
Sbjct: 3755 ttcttttccttctctagctt 3736
to top
>ref|XM_328654.1| Neurospora crassa OR74A hypothetical protein (NCU07949.1) partial
            mRNA
          Length = 8481

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 328  ttcttttccttctctagctt 347
            ||||||||||||||||||||
Sbjct: 3755 ttcttttccttctctagctt 3736
to top
>gb|AC111010.5| Mus musculus BAC clone RP23-419L21 from chromosome 14, complete
             sequence
          Length = 205141

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 328   ttcttttccttctctagctt 347
             ||||||||||||||||||||
Sbjct: 23505 ttcttttccttctctagctt 23524
to top
>gb|AC166290.7| Mus musculus  BAC RP23-14P17 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 242055

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 428   tcatctcctttctgcgatca 447
             ||||||||||||||||||||
Sbjct: 96145 tcatctcctttctgcgatca 96126
to top
>gb|AC163275.4| Mus musculus chromosome 5, clone RP23-458G12, complete sequence
          Length = 176643

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 230    gttccttctgcttttggatggctt 253
              ||||| ||||||||||||||||||
Sbjct: 104744 gttccctctgcttttggatggctt 104767
to top
>ref|XM_742778.1| Aspergillus fumigatus Af293 tRNA-splicing endonuclease (Afu6g02060)
            partial mRNA
          Length = 6231

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 349  tcataggctttgattgcgtc 368
            ||||||||||||||||||||
Sbjct: 3143 tcataggctttgattgcgtc 3124
to top
>gb|AC121590.2| Mus musculus BAC clone RP23-281L22 from 2, complete sequence
          Length = 167364

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 351   ataggctttgattgcgtctc 370
             ||||||||||||||||||||
Sbjct: 78585 ataggctttgattgcgtctc 78566
to top
>gb|AC110540.7| Mus musculus chromosome 3, clone RP23-105B8, complete sequence
          Length = 232416

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 321   agaaagtttcttttccttct 340
             ||||||||||||||||||||
Sbjct: 57587 agaaagtttcttttccttct 57606
to top
>gb|AC160063.12| Mus musculus 10 BAC RP24-502H14 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 158603

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 524   tagctttctcaatgagcttg 543
             ||||||||||||||||||||
Sbjct: 80130 tagctttctcaatgagcttg 80149
to top
>gb|AC154993.9| Mus musculus chromosome 3, clone RP23-246L14, complete sequence
          Length = 208416

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 321    agaaagtttcttttccttct 340
              ||||||||||||||||||||
Sbjct: 203871 agaaagtttcttttccttct 203890
to top
>emb|AL607062.10| Human DNA sequence from clone RP11-439F7 on chromosome 10 Contains a
             novel gene (LOC221035), complete sequence
          Length = 88210

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 422   tttttgtcatctcctttctg 441
             ||||||||||||||||||||
Sbjct: 68033 tttttgtcatctcctttctg 68014
to top
>gb|AF306784.1| Cherax quadricarinatus vitellogenin (vg) mRNA, complete cds
          Length = 7944

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 305  ccttcacattatcttcagaa 324
            ||||||||||||||||||||
Sbjct: 3880 ccttcacattatcttcagaa 3861
to top
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 230     gttccttctgcttttggatg 249
               ||||||||||||||||||||
Sbjct: 2037164 gttccttctgcttttggatg 2037145
to top
>gb|AC118290.7| Rattus norvegicus 2 BAC CH230-366D18 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 210896

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 96     agtcttagcaagagtccaac 115
              ||||||||||||||||||||
Sbjct: 193966 agtcttagcaagagtccaac 193985
to top
>emb|BX571658.1| Wolinella succinogenes, complete genome; segment 2/7
          Length = 346792

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 473   gtatcacttctccatcattg 492
             ||||||||||||||||||||
Sbjct: 85185 gtatcacttctccatcattg 85166
to top
>emb|BX323864.8| Zebrafish DNA sequence from clone CH211-218K4 in linkage group 17,
              complete sequence
          Length = 154824

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 426    tgtcatctcctttctgcgat 445
              ||||||||||||||||||||
Sbjct: 148312 tgtcatctcctttctgcgat 148331
to top
>gb|AC122725.30| Medicago truncatula clone mth2-4c11, complete sequence
          Length = 134892

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 643   acctcaatcctgtcaagcatagacgggtttgc 674
             ||||||||  ||||||||||||||||| ||||
Sbjct: 71006 acctcaattttgtcaagcatagacggggttgc 71037
to top
>emb|BX511254.6| Zebrafish DNA sequence from clone DKEYP-90G2 in linkage group 17,
              complete sequence
          Length = 185139

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 426    tgtcatctcctttctgcgat 445
              ||||||||||||||||||||
Sbjct: 138824 tgtcatctcctttctgcgat 138843
to top
>gb|AC010863.10| Homo sapiens chromosome 10 clone RP11-346E7, complete sequence
          Length = 186902

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 422   tttttgtcatctcctttctg 441
             ||||||||||||||||||||
Sbjct: 64839 tttttgtcatctcctttctg 64820
to top
>gb|AC007518.32| Mus musculus chromosome , clone CT7-345D4, complete sequence
          Length = 193714

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 428    tcatctcctttctgcgatca 447
              ||||||||||||||||||||
Sbjct: 175471 tcatctcctttctgcgatca 175452
to top
>gb|AC106799.3| Homo sapiens chromosome 5 clone RP11-445O3, complete sequence
          Length = 176095

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 229    tgttccttctgcttttggat 248
              ||||||||||||||||||||
Sbjct: 145310 tgttccttctgcttttggat 145291
to top
>dbj|AK138983.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length
            enriched library, clone:A530045A01 product:hypothetical
            protein, full insert sequence
          Length = 2593

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 230  gttccttctgcttttggatggctt 253
            ||||| ||||||||||||||||||
Sbjct: 1241 gttccctctgcttttggatggctt 1264
to top
>gb|AC026711.6| Homo sapiens chromosome 5 clone CTD-2093E18, complete sequence
          Length = 191309

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 229   tgttccttctgcttttggat 248
             ||||||||||||||||||||
Sbjct: 14094 tgttccttctgcttttggat 14075
to top
>gb|AC153884.1| Mus musculus  6 BAC RP23-476E22 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 195597

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 366    gtctcgtcttatgtttctga 385
              ||||||||||||||||||||
Sbjct: 133775 gtctcgtcttatgtttctga 133756
to top
>dbj|BS000019.1| Pan troglodytes chromosome 22 clone:PTB-023I17, map 22, complete
             sequences
          Length = 141751

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 322   gaaagtttcttttccttctc 341
             ||||||||||||||||||||
Sbjct: 77045 gaaagtttcttttccttctc 77064
to top
>gb|AY112589.1| Zea mays CL61174_1 mRNA sequence
          Length = 414

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 27/30 (90%)
 Strand = Plus / Plus

                                         
Query: 221 tcagntnctgttccttctgcttttggatgg 250
           |||| | ||||||||||||||| |||||||
Sbjct: 374 tcagttcctgttccttctgcttctggatgg 403
to top
>gb|AC153561.5| Mus musculus 10 BAC RP23-426E11 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 228734

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 629    ttccatagtactcaacctca 648
              ||||||||||||||||||||
Sbjct: 190204 ttccatagtactcaacctca 190185
to top
>gb|AC145738.4| Mus musculus BAC clone RP24-293H7 from 3, complete sequence
          Length = 135567

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 489   attgcttggtgttaccccaa 508
             ||||||||||||||||||||
Sbjct: 22759 attgcttggtgttaccccaa 22740
to top
>gb|AC147968.2| Gallus gallus BAC clone CH261-119F24 from chromosome unknown, complete
              sequence
          Length = 209917

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 391    accttgccttcttcagataa 410
              ||||||||||||||||||||
Sbjct: 165413 accttgccttcttcagataa 165432
to top
>emb|AL928700.7| Mouse DNA sequence from clone RP23-388J20 on chromosome 2, complete
              sequence
          Length = 158364

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 330    cttttccttctctagcttat 349
              ||||||||||||||||||||
Sbjct: 111121 cttttccttctctagcttat 111140
to top
>emb|AL928543.5| Mouse DNA sequence from clone RP23-345P1 on chromosome 2, complete
             sequence
          Length = 90551

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 351   ataggctttgattgcgtctc 370
             ||||||||||||||||||||
Sbjct: 24017 ataggctttgattgcgtctc 23998
to top
>emb|AL845165.4| Mouse DNA sequence from clone RP23-281N9 on chromosome 2, complete
             sequence
          Length = 112789

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 473   gtatcacttctccatcattg 492
             ||||||||||||||||||||
Sbjct: 40066 gtatcacttctccatcattg 40047


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,036,636
Number of Sequences: 3902068
Number of extensions: 6036636
Number of successful extensions: 126492
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 126299
Number of HSP's gapped (non-prelim): 191
length of query: 677
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 654
effective length of database: 17,143,297,704
effective search space: 11211716698416
effective search space used: 11211716698416
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top