>COT2_BOVIN (Q9TTR7) COUP transcription factor 2 (COUP-TF2) (COUP-TF II)|
          Length = 414

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 23/97 (23%), Positives = 41/97 (42%)
 Frame = -2

Query: 461 RKGRPQKGRLPNSTHPSFRQVVLQDGAMTSCSKGYLNLSRHAVSVQLCGTLEVVIEANSQ 282
           R+   Q+GR+P  T PS  Q  L +G   +C               L G + +++ A   
Sbjct: 145 RREAVQRGRMP-PTQPSHGQFALTNGDPLNCHS------------YLSGYISLLLRAEPY 191

Query: 281 SGTIKGEVSIKAQNCNITQDVCQLGDSVLEITVAWSR 171
             +  G   ++  N    +++C+L   +L   V W+R
Sbjct: 192 PTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWAR 228

>YO43_CAEEL (P34681) Hypothetical protein ZK757.3|
          Length = 1040

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -1

Query: 231 NSGCVSTWRLCAGNHCCLVPSSSGQAVDLDGGK 133
           NS    TW+    + C  +P+++GQA+DL+GGK
Sbjct: 247 NSANFYTWK----SSCYRIPTAAGQALDLEGGK 275

>COT2_RAT (O09018) COUP transcription factor 2 (COUP-TF2) (COUP-TF II)|
           (Apolipoprotein AI regulatory protein 1) (ARP-1)
           (Ovalbumin upstream promoter beta nuclear receptor)
           (COUPb)
          Length = 414

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 22/97 (22%), Positives = 41/97 (42%)
 Frame = -2

Query: 461 RKGRPQKGRLPNSTHPSFRQVVLQDGAMTSCSKGYLNLSRHAVSVQLCGTLEVVIEANSQ 282
           R+   Q+GR+P  T P+  Q  L +G   +C               L G + +++ A   
Sbjct: 145 RREAVQRGRMP-PTQPTHGQFALTNGDPLNCHS------------YLSGYISLLLRAEPY 191

Query: 281 SGTIKGEVSIKAQNCNITQDVCQLGDSVLEITVAWSR 171
             +  G   ++  N    +++C+L   +L   V W+R
Sbjct: 192 PTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWAR 228

>COT2_MOUSE (P43135) COUP transcription factor 2 (COUP-TF2) (COUP-TF II)|
           (Apolipoprotein AI regulatory protein 1) (ARP-1)
          Length = 414

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 22/97 (22%), Positives = 41/97 (42%)
 Frame = -2

Query: 461 RKGRPQKGRLPNSTHPSFRQVVLQDGAMTSCSKGYLNLSRHAVSVQLCGTLEVVIEANSQ 282
           R+   Q+GR+P  T P+  Q  L +G   +C               L G + +++ A   
Sbjct: 145 RREAVQRGRMP-PTQPTHGQFALTNGDPLNCHS------------YLSGYISLLLRAEPY 191

Query: 281 SGTIKGEVSIKAQNCNITQDVCQLGDSVLEITVAWSR 171
             +  G   ++  N    +++C+L   +L   V W+R
Sbjct: 192 PTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWAR 228

>COT2_HUMAN (P24468) COUP transcription factor 2 (COUP-TF2) (COUP-TF II)|
           (Apolipoprotein AI regulatory protein 1) (ARP-1)
          Length = 414

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 22/97 (22%), Positives = 41/97 (42%)
 Frame = -2

Query: 461 RKGRPQKGRLPNSTHPSFRQVVLQDGAMTSCSKGYLNLSRHAVSVQLCGTLEVVIEANSQ 282
           R+   Q+GR+P  T P+  Q  L +G   +C               L G + +++ A   
Sbjct: 145 RREAVQRGRMP-PTQPTHGQFALTNGDPLNCHS------------YLSGYISLLLRAEPY 191

Query: 281 SGTIKGEVSIKAQNCNITQDVCQLGDSVLEITVAWSR 171
             +  G   ++  N    +++C+L   +L   V W+R
Sbjct: 192 PTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWAR 228

>COT2_CHICK (Q90733) COUP transcription factor 2 (COUP-TF2) (COUP-TF II)|
          Length = 410

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 22/97 (22%), Positives = 41/97 (42%)
 Frame = -2

Query: 461 RKGRPQKGRLPNSTHPSFRQVVLQDGAMTSCSKGYLNLSRHAVSVQLCGTLEVVIEANSQ 282
           R+   Q+GR+P  T P+  Q  L +G   +C               L G + +++ A   
Sbjct: 141 RREAVQRGRMP-PTQPTHGQFALTNGDPLNCHS------------YLSGYISLLLRAEPY 187

Query: 281 SGTIKGEVSIKAQNCNITQDVCQLGDSVLEITVAWSR 171
             +  G   ++  N    +++C+L   +L   V W+R
Sbjct: 188 PTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWAR 224

>FTHS_LACLA (Q9CH07) Formate--tetrahydrofolate ligase (EC 6.3.4.3)|
           (Formyltetrahydrofolate synthetase) (FHS) (FTHFS)
          Length = 555

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
 Frame = -2

Query: 365 KGYLNLSRHAVSVQLCGTLEVVIEANSQSGTIKGEVSIKAQ-------NCNITQDVCQLG 207
           KG+ NL RH  ++Q  G L V++  N  +   K E+S             ++TQ   + G
Sbjct: 355 KGFANLERHIKNMQSYG-LPVIVAINEFASDTKSEISALKDLTEALGVPVSLTQVFAKGG 413

Query: 206 DSVLEITVAWSRLVQDK 156
           +  L++    S ++Q+K
Sbjct: 414 EGGLDLAEKLSGMLQEK 430

>NHAA_RHOER (P13448) Nitrile hydratase subunit alpha (EC 4.2.1.84) (Nitrilase)|
           (NHase)
          Length = 206

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -2

Query: 464 PRKGRPQKGRLPNSTHPSFRQVVLQDGAMTSCSKGYLN-LSRHAVSVQLCGTLEVVI 297
           PR+G     R    T P FRQ++L DG       GYL     + V+V+   TL+ VI
Sbjct: 53  PRRGAELVARA--WTDPEFRQLLLTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVI 107


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,274,142
Number of Sequences: 219361
Number of extensions: 1631544
Number of successful extensions: 3824
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3824
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5310515667
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)