ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags6c18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL450321.15| Mouse DNA sequence from clone RP23-232M10 on ch... 40 1.1
2emb|BX649527.10| Zebrafish DNA sequence from clone CH211-243J15 ... 40 1.1
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.1
4dbj|AP005168.3| Oryza sativa (japonica cultivar-group) genomic D... 40 1.1
5emb|AL928812.11| Mouse DNA sequence from clone RP23-321B23 on ch... 40 1.1
6dbj|AP004336.2| Oryza sativa (japonica cultivar-group) genomic D... 40 1.1
7gb|AC102342.10| Mus musculus chromosome 18, clone RP23-250K3, co... 38 4.2
8gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 4.2
9gb|AC113433.8| Oryza sativa chromosome 3 BAC OSJNBb0108E08 genom... 38 4.2
10emb|AL391726.8| Human DNA sequence from clone RP11-86O4 on chrom... 38 4.2
11dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.2
12dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.2
13dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.2
14gb|AC137547.2| Oryza sativa (japonica cultivar-group) chromosome... 38 4.2
15dbj|AP006235.3| Oryza sativa (japonica cultivar-group) genomic D... 38 4.2
16dbj|AP005912.3| Oryza sativa (japonica cultivar-group) genomic D... 38 4.2
17dbj|AK109606.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 4.2
18gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 38 4.2
19emb|AL772426.5|CNS08CA4 Oryza sativa chromosome 12, . BAC OJ1310... 38 4.2
20emb|AL772427.4|CNS08CA5 Oryza sativa chromosome 12, . BAC OJ1260... 38 4.2
21gb|AC126222.2| Oryza sativa (japonica cultivar-group) chromosome... 38 4.2

>emb|AL450321.15| Mouse DNA sequence from clone RP23-232M10 on chromosome 13 Contains a
              novel gene, a non-POU domain containing octamer-binding
              protein (Nono) pseudogene, a Sin3-associated polypeptide 18
              (Sap18) pseudogene, the 5' end of a novel gene and a CpG
              island, complete sequence
          Length = 209175

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                          
Query: 21     catgcatgcat-cagccatgcatgcatg 47
              ||||||||||| ||||||||||||||||
Sbjct: 205595 catgcatgcatgcagccatgcatgcatg 205568



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>emb|BX649527.10| Zebrafish DNA sequence from clone CH211-243J15 in linkage group 4,
              complete sequence
          Length = 152164

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 14     gcagccacatgcatgcatca 33
              ||||||||||||||||||||
Sbjct: 137067 gcagccacatgcatgcatca 137048



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 14       gcagccacatgcatgcatca 33
                ||||||||||||||||||||
Sbjct: 13191171 gcagccacatgcatgcatca 13191190



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>dbj|AP005168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBa0066B06
          Length = 154025

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 14     gcagccacatgcatgcatca 33
              ||||||||||||||||||||
Sbjct: 109498 gcagccacatgcatgcatca 109517



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>emb|AL928812.11| Mouse DNA sequence from clone RP23-321B23 on chromosome 2, complete
             sequence
          Length = 199019

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 19    cacatgcatgcatcagccatgcatgcat 46
             |||||||||||||||  |||||||||||
Sbjct: 55493 cacatgcatgcatcacacatgcatgcat 55466



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>dbj|AP004336.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
            clone:P0498D08, complete sequence
          Length = 53801

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 14   gcagccacatgcatgcatca 33
            ||||||||||||||||||||
Sbjct: 7493 gcagccacatgcatgcatca 7512



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>gb|AC102342.10| Mus musculus chromosome 18, clone RP23-250K3, complete sequence
          Length = 168009

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 31    tcagccatgcatgcatggc 49
             |||||||||||||||||||
Sbjct: 84920 tcagccatgcatgcatggc 84902



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 31       tcagccatgcatgcatggc 49
                |||||||||||||||||||
Sbjct: 16689503 tcagccatgcatgcatggc 16689521



 Score = 38.2 bits (19), Expect = 4.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 31       tcagccatgcatgcatggc 49
                |||||||||||||||||||
Sbjct: 11986117 tcagccatgcatgcatggc 11986099



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>gb|AC113433.8| Oryza sativa chromosome 3 BAC OSJNBb0108E08 genomic sequence, complete
             sequence
          Length = 129167

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 31    tcagccatgcatgcatggc 49
             |||||||||||||||||||
Sbjct: 40296 tcagccatgcatgcatggc 40314



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>emb|AL391726.8| Human DNA sequence from clone RP11-86O4 on chromosome 6 Contains part
             of the gene for androgen induced protein (AIG-1) (CGI-103)
             (includes FLJ10485), complete sequence
          Length = 121029

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 36    catgcatgcatggctatgtagta 58
             |||||||||| ||||||||||||
Sbjct: 96456 catgcatgcagggctatgtagta 96434



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 29       catcagccatgcatgcatg 47
                |||||||||||||||||||
Sbjct: 24237658 catcagccatgcatgcatg 24237640



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 33      agccatgcatgcatggcta 51
               |||||||||||||||||||
Sbjct: 7907530 agccatgcatgcatggcta 7907548



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 31       tcagccatgcatgcatggc 49
                |||||||||||||||||||
Sbjct: 16683136 tcagccatgcatgcatggc 16683154



 Score = 38.2 bits (19), Expect = 4.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 31       tcagccatgcatgcatggc 49
                |||||||||||||||||||
Sbjct: 11982880 tcagccatgcatgcatggc 11982862



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>gb|AC137547.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
            OSJNBa0052J20, complete sequence
          Length = 144969

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 31   tcagccatgcatgcatggc 49
            |||||||||||||||||||
Sbjct: 6697 tcagccatgcatgcatggc 6679



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>dbj|AP006235.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0017N10
          Length = 168535

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 33    agccatgcatgcatggcta 51
             |||||||||||||||||||
Sbjct: 20173 agccatgcatgcatggcta 20191



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>dbj|AP005912.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0064I23
          Length = 161865

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 33     agccatgcatgcatggcta 51
              |||||||||||||||||||
Sbjct: 154733 agccatgcatgcatggcta 154751



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>dbj|AK109606.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-F03, full
            insert sequence
          Length = 1427

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 29   catcagccatgcatgcatg 47
            |||||||||||||||||||
Sbjct: 1271 catcagccatgcatgcatg 1253



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 29       catcagccatgcatgcatg 47
                |||||||||||||||||||
Sbjct: 24165864 catcagccatgcatgcatg 24165846



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>emb|AL772426.5|CNS08CA4 Oryza sativa chromosome 12, . BAC OJ1310_C03 of library Monsanto from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 132733

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 29     catcagccatgcatgcatg 47
              |||||||||||||||||||
Sbjct: 122349 catcagccatgcatgcatg 122331



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>emb|AL772427.4|CNS08CA5 Oryza sativa chromosome 12, . BAC OJ1260_B01 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 135793

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 29    catcagccatgcatgcatg 47
             |||||||||||||||||||
Sbjct: 14432 catcagccatgcatgcatg 14414



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>gb|AC126222.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0014I10, complete sequence
          Length = 113946

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 31    tcagccatgcatgcatggc 49
             |||||||||||||||||||
Sbjct: 87379 tcagccatgcatgcatggc 87361


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 856,394
Number of Sequences: 3902068
Number of extensions: 856394
Number of successful extensions: 55241
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 54841
Number of HSP's gapped (non-prelim): 401
length of query: 96
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 75
effective length of database: 17,151,101,840
effective search space: 1286332638000
effective search space used: 1286332638000
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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