| Clone Name | rbags6c18 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL450321.15| Mouse DNA sequence from clone RP23-232M10 on chromosome 13 Contains a novel gene, a non-POU domain containing octamer-binding protein (Nono) pseudogene, a Sin3-associated polypeptide 18 (Sap18) pseudogene, the 5' end of a novel gene and a CpG island, complete sequence Length = 209175 Score = 40.1 bits (20), Expect = 1.1 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 21 catgcatgcat-cagccatgcatgcatg 47 ||||||||||| |||||||||||||||| Sbjct: 205595 catgcatgcatgcagccatgcatgcatg 205568
>emb|BX649527.10| Zebrafish DNA sequence from clone CH211-243J15 in linkage group 4, complete sequence Length = 152164 Score = 40.1 bits (20), Expect = 1.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 gcagccacatgcatgcatca 33 |||||||||||||||||||| Sbjct: 137067 gcagccacatgcatgcatca 137048
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 1.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 gcagccacatgcatgcatca 33 |||||||||||||||||||| Sbjct: 13191171 gcagccacatgcatgcatca 13191190
>dbj|AP005168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0066B06 Length = 154025 Score = 40.1 bits (20), Expect = 1.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 gcagccacatgcatgcatca 33 |||||||||||||||||||| Sbjct: 109498 gcagccacatgcatgcatca 109517
>emb|AL928812.11| Mouse DNA sequence from clone RP23-321B23 on chromosome 2, complete sequence Length = 199019 Score = 40.1 bits (20), Expect = 1.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 19 cacatgcatgcatcagccatgcatgcat 46 ||||||||||||||| ||||||||||| Sbjct: 55493 cacatgcatgcatcacacatgcatgcat 55466
>dbj|AP004336.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0498D08, complete sequence Length = 53801 Score = 40.1 bits (20), Expect = 1.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 gcagccacatgcatgcatca 33 |||||||||||||||||||| Sbjct: 7493 gcagccacatgcatgcatca 7512
>gb|AC102342.10| Mus musculus chromosome 18, clone RP23-250K3, complete sequence Length = 168009 Score = 38.2 bits (19), Expect = 4.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 tcagccatgcatgcatggc 49 ||||||||||||||||||| Sbjct: 84920 tcagccatgcatgcatggc 84902
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 38.2 bits (19), Expect = 4.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 tcagccatgcatgcatggc 49 ||||||||||||||||||| Sbjct: 16689503 tcagccatgcatgcatggc 16689521 Score = 38.2 bits (19), Expect = 4.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 tcagccatgcatgcatggc 49 ||||||||||||||||||| Sbjct: 11986117 tcagccatgcatgcatggc 11986099
>gb|AC113433.8| Oryza sativa chromosome 3 BAC OSJNBb0108E08 genomic sequence, complete sequence Length = 129167 Score = 38.2 bits (19), Expect = 4.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 tcagccatgcatgcatggc 49 ||||||||||||||||||| Sbjct: 40296 tcagccatgcatgcatggc 40314
>emb|AL391726.8| Human DNA sequence from clone RP11-86O4 on chromosome 6 Contains part of the gene for androgen induced protein (AIG-1) (CGI-103) (includes FLJ10485), complete sequence Length = 121029 Score = 38.2 bits (19), Expect = 4.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 36 catgcatgcatggctatgtagta 58 |||||||||| |||||||||||| Sbjct: 96456 catgcatgcagggctatgtagta 96434
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 38.2 bits (19), Expect = 4.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 29 catcagccatgcatgcatg 47 ||||||||||||||||||| Sbjct: 24237658 catcagccatgcatgcatg 24237640
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 38.2 bits (19), Expect = 4.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 33 agccatgcatgcatggcta 51 ||||||||||||||||||| Sbjct: 7907530 agccatgcatgcatggcta 7907548
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 38.2 bits (19), Expect = 4.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 tcagccatgcatgcatggc 49 ||||||||||||||||||| Sbjct: 16683136 tcagccatgcatgcatggc 16683154 Score = 38.2 bits (19), Expect = 4.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 tcagccatgcatgcatggc 49 ||||||||||||||||||| Sbjct: 11982880 tcagccatgcatgcatggc 11982862
>gb|AC137547.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0052J20, complete sequence Length = 144969 Score = 38.2 bits (19), Expect = 4.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 tcagccatgcatgcatggc 49 ||||||||||||||||||| Sbjct: 6697 tcagccatgcatgcatggc 6679
>dbj|AP006235.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0017N10 Length = 168535 Score = 38.2 bits (19), Expect = 4.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 33 agccatgcatgcatggcta 51 ||||||||||||||||||| Sbjct: 20173 agccatgcatgcatggcta 20191
>dbj|AP005912.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0064I23 Length = 161865 Score = 38.2 bits (19), Expect = 4.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 33 agccatgcatgcatggcta 51 ||||||||||||||||||| Sbjct: 154733 agccatgcatgcatggcta 154751
>dbj|AK109606.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-F03, full insert sequence Length = 1427 Score = 38.2 bits (19), Expect = 4.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 29 catcagccatgcatgcatg 47 ||||||||||||||||||| Sbjct: 1271 catcagccatgcatgcatg 1253
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 38.2 bits (19), Expect = 4.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 29 catcagccatgcatgcatg 47 ||||||||||||||||||| Sbjct: 24165864 catcagccatgcatgcatg 24165846
>emb|AL772426.5|CNS08CA4 Oryza sativa chromosome 12, . BAC OJ1310_C03 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132733 Score = 38.2 bits (19), Expect = 4.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 29 catcagccatgcatgcatg 47 ||||||||||||||||||| Sbjct: 122349 catcagccatgcatgcatg 122331
>emb|AL772427.4|CNS08CA5 Oryza sativa chromosome 12, . BAC OJ1260_B01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 135793 Score = 38.2 bits (19), Expect = 4.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 29 catcagccatgcatgcatg 47 ||||||||||||||||||| Sbjct: 14432 catcagccatgcatgcatg 14414
>gb|AC126222.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0014I10, complete sequence Length = 113946 Score = 38.2 bits (19), Expect = 4.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 tcagccatgcatgcatggc 49 ||||||||||||||||||| Sbjct: 87379 tcagccatgcatgcatggc 87361 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 856,394 Number of Sequences: 3902068 Number of extensions: 856394 Number of successful extensions: 55241 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 54841 Number of HSP's gapped (non-prelim): 401 length of query: 96 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 75 effective length of database: 17,151,101,840 effective search space: 1286332638000 effective search space used: 1286332638000 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)