ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5n11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KCNA2_RAT (P63142) Potassium voltage-gated channel subfamily A m... 29 2.8
2KCNA2_MOUSE (P63141) Potassium voltage-gated channel subfamily A... 29 2.8
3KCNA2_HUMAN (P16389) Potassium voltage-gated channel subfamily A... 29 2.8
4KCNA2_CANFA (Q28293) Potassium voltage-gated channel subfamily A... 29 2.8

>KCNA2_RAT (P63142) Potassium voltage-gated channel subfamily A member 2|
           (Voltage-gated potassium channel subunit Kv1.2) (RBK2)
           (RCK5) (RAK)
          Length = 499

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 6/33 (18%)
 Frame = -2

Query: 164 SSIGYLXNTSFCX------CLCVLHFSFHFIVR 84
           S+IGY  +TSF         LC++ FSF F+VR
Sbjct: 208 STIGYQQSTSFTDPFFIVETLCIIWFSFEFLVR 240



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>KCNA2_MOUSE (P63141) Potassium voltage-gated channel subfamily A member 2|
           (Voltage-gated potassium channel subunit Kv1.2) (MK2)
          Length = 499

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 6/33 (18%)
 Frame = -2

Query: 164 SSIGYLXNTSFCX------CLCVLHFSFHFIVR 84
           S+IGY  +TSF         LC++ FSF F+VR
Sbjct: 208 STIGYQQSTSFTDPFFIVETLCIIWFSFEFLVR 240



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>KCNA2_HUMAN (P16389) Potassium voltage-gated channel subfamily A member 2|
           (Voltage-gated potassium channel subunit Kv1.2) (HBK5)
           (NGK1) (HUKIV)
          Length = 499

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 6/33 (18%)
 Frame = -2

Query: 164 SSIGYLXNTSFCX------CLCVLHFSFHFIVR 84
           S+IGY  +TSF         LC++ FSF F+VR
Sbjct: 208 STIGYQQSTSFTDPFFIVETLCIIWFSFEFLVR 240



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>KCNA2_CANFA (Q28293) Potassium voltage-gated channel subfamily A member 2|
           (Voltage-gated potassium channel subunit Kv1.2) (CSMK1)
          Length = 499

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 6/33 (18%)
 Frame = -2

Query: 164 SSIGYLXNTSFCX------CLCVLHFSFHFIVR 84
           S+IGY  +TSF         LC++ FSF F+VR
Sbjct: 208 STIGYQQSTSFTDPFFIVETLCIIWFSFEFLVR 240


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,196,734
Number of Sequences: 219361
Number of extensions: 379587
Number of successful extensions: 473
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 80,573,946
effective HSP length: 57
effective length of database: 68,070,369
effective search space used: 1633688856
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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