ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags5n10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_474856.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 4638 Score = 289 bits (146), Expect = 6e-75 Identities = 329/386 (85%), Gaps = 3/386 (0%) Strand = Plus / Minus Query: 319 aattccttcaccagacctgcgtccagaaccaagactcgatcacagtccatgaccgtcggt 378 ||||| || ||||||||||| ||||| |||| |||| |||||| |||||||| || ||| Sbjct: 4553 aattcttttaccagacctgcatccagcaccagaactctatcacaatccatgactgttggt 4494 Query: 379 atcctgtgcgcaatgctgatgattgtacaggatgagaactgctctcgcgtgatcttctga 438 || ||||| |||||||| || |||||||| || || || | | ||| ||||||||||| Sbjct: 4493 attctgtgtgcaatgctaattattgtacatgaagaaaattcttgtcgtgtgatcttctgt 4434 Query: 439 atcgtcgcgtcagtttgagaatcaactgaagcagttgcctcgtccataaataagatttgg 498 ||||| || |||||||||||||||||||||||||||||||| ||||||||||| ||| | Sbjct: 4433 atcgtggcatcagtttgagaatcaactgaagcagttgcctcatccataaataatattcga 4374 Query: 499 ttctgcttcaggatcacccggccaaggcacagaagctgtctttggcctacgcttccagtt 558 || |||||| || || |||||||| || |||||||| ||||||||||| | ||||||| Sbjct: 4373 gtccgcttcaatatgacgcggccaagacaaagaagctgcctttggcctacac-tccagtt 4315 Query: 559 ctccccgctatcagccactagagcatcgagcttttcagcttttgaagccactacatcttt 618 |||||| |||||||||||||||||||| || |||| || ||||||||| |||||||| || Sbjct: 4314 ctccccactatcagccactagagcatcaagtttttgaggttttgaagcaactacatc-tt 4256 Query: 619 tcagttggcaacgctccagagcctgccatatttgagcatctgaatactgcccaactggat 678 |||||||||| | |||||||||| ||||||| | |||||||||||||||||||| |||| Sbjct: 4255 tcagttggcagccctccagagcccgccatatctcagcatctgaatactgcccaattgga- 4197 Query: 679 tcaatgttacttcgaatcgtcccttc 704 |||||||| |||||||| || ||||| Sbjct: 4196 tcaatgttgcttcgaattgttccttc 4171
>dbj|AK100406.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023087C13, full insert sequence Length = 4081 Score = 289 bits (146), Expect = 6e-75 Identities = 329/386 (85%), Gaps = 3/386 (0%) Strand = Plus / Minus Query: 319 aattccttcaccagacctgcgtccagaaccaagactcgatcacagtccatgaccgtcggt 378 ||||| || ||||||||||| ||||| |||| |||| |||||| |||||||| || ||| Sbjct: 3753 aattcttttaccagacctgcatccagcaccagaactctatcacaatccatgactgttggt 3694 Query: 379 atcctgtgcgcaatgctgatgattgtacaggatgagaactgctctcgcgtgatcttctga 438 || ||||| |||||||| || |||||||| || || || | | ||| ||||||||||| Sbjct: 3693 attctgtgtgcaatgctaattattgtacatgaagaaaattcttgtcgtgtgatcttctgt 3634 Query: 439 atcgtcgcgtcagtttgagaatcaactgaagcagttgcctcgtccataaataagatttgg 498 ||||| || |||||||||||||||||||||||||||||||| ||||||||||| ||| | Sbjct: 3633 atcgtggcatcagtttgagaatcaactgaagcagttgcctcatccataaataatattcga 3574 Query: 499 ttctgcttcaggatcacccggccaaggcacagaagctgtctttggcctacgcttccagtt 558 || |||||| || || |||||||| || |||||||| ||||||||||| | ||||||| Sbjct: 3573 gtccgcttcaatatgacgcggccaagacaaagaagctgcctttggcctacac-tccagtt 3515 Query: 559 ctccccgctatcagccactagagcatcgagcttttcagcttttgaagccactacatcttt 618 |||||| |||||||||||||||||||| || |||| || ||||||||| |||||||| || Sbjct: 3514 ctccccactatcagccactagagcatcaagtttttgaggttttgaagcaactacatc-tt 3456 Query: 619 tcagttggcaacgctccagagcctgccatatttgagcatctgaatactgcccaactggat 678 |||||||||| | |||||||||| ||||||| | |||||||||||||||||||| |||| Sbjct: 3455 tcagttggcagccctccagagcccgccatatctcagcatctgaatactgcccaattgga- 3397 Query: 679 tcaatgttacttcgaatcgtcccttc 704 |||||||| |||||||| || ||||| Sbjct: 3396 tcaatgttgcttcgaattgttccttc 3371
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 168 bits (85), Expect = 2e-38 Identities = 206/245 (84%), Gaps = 1/245 (0%) Strand = Plus / Plus Query: 333 acctgcgtccagaaccaagactcgatcacagtccatgaccgtcggtatcctgtgcgcaat 392 |||||| ||||| |||| |||| |||||| |||||||| || ||||| ||||| ||||| Sbjct: 7264018 acctgcatccagcaccagaactctatcacaatccatgactgttggtattctgtgtgcaat 7264077 Query: 393 gctgatgattgtacaggatgagaactgctctcgcgtgatcttctgaatcgtcgcgtcagt 452 ||| || |||||||| || || || | | ||| ||||||||||| ||||| || ||||| Sbjct: 7264078 gctaattattgtacatgaagaaaattcttgtcgtgtgatcttctgtatcgtggcatcagt 7264137 Query: 453 ttgagaatcaactgaagcagttgcctcgtccataaataagatttggttctgcttcaggat 512 ||||||||||||||||||||||||||| ||||||||||| ||| | || |||||| || Sbjct: 7264138 ttgagaatcaactgaagcagttgcctcatccataaataatattcgagtccgcttcaatat 7264197 Query: 513 cacccggccaaggcacagaagctgtctttggcctacgcttccagttctccccgctatcag 572 || |||||||| || |||||||| ||||||||||| | ||||||||||||| ||||||| Sbjct: 7264198 gacgcggccaagacaaagaagctgcctttggcctacac-tccagttctccccactatcag 7264256 Query: 573 ccact 577 ||||| Sbjct: 7264257 ccact 7264261 Score = 69.9 bits (35), Expect = 1e-08 Identities = 110/135 (81%) Strand = Plus / Plus Query: 351 gactcgatcacagtccatgaccgtcggtatcctgtgcgcaatgctgatgattgtacagga 410 ||||| ||||| ||||||||| |||||||| | |||||||||||||||||| || || Sbjct: 7279765 gactctatcactgtccatgacagtcggtatgcggtgcgcaatgctgatgatagtgcaatc 7279824 Query: 411 tgagaactgctctcgcgtgatcttctgaatcgtcgcgtcagtttgagaatcaactgaagc 470 | ||||| ||||| ||||| |||| || ||||| || || ||||||||||| ||||| Sbjct: 7279825 agtgaactcttctcggatgatcctctggatagtcgcatctgtctgagaatcaacggaagc 7279884 Query: 471 agttgcctcgtccat 485 |||||||| ||||| Sbjct: 7279885 tgttgcctcatccat 7279899 Score = 65.9 bits (33), Expect = 2e-07 Identities = 61/69 (88%), Gaps = 1/69 (1%) Strand = Plus / Plus Query: 576 ctagagcatcgagcttttcagcttttgaagccactacatcttttcagttggcaacgctcc 635 |||||||||| || |||| || ||||||||| |||||||| |||||||||||| | |||| Sbjct: 7264919 ctagagcatcaagtttttgaggttttgaagcaactacatc-tttcagttggcagccctcc 7264977 Query: 636 agagcctgc 644 ||||||||| Sbjct: 7264978 agagcctgc 7264986 Score = 60.0 bits (30), Expect = 1e-05 Identities = 55/62 (88%), Gaps = 1/62 (1%) Strand = Plus / Plus Query: 643 gccatatttgagcatctgaatactgcccaactggattcaatgttacttcgaatcgtccct 702 ||||||| | |||||||||||||||||||| |||| |||||||| |||||||| || ||| Sbjct: 7265090 gccatatctcagcatctgaatactgcccaattgga-tcaatgttgcttcgaattgttcct 7265148 Query: 703 tc 704 || Sbjct: 7265149 tc 7265150 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 460 tcaactgaagcagttgcctc 479 |||||||||||||||||||| Sbjct: 29734772 tcaactgaagcagttgcctc 29734753
>emb|AJ535073.1|OSA535073 Oryza sativa (japonica cultivar-group) mrp9 gene for MRP-like ABC transporter, exons 1-11 Length = 11279 Score = 168 bits (85), Expect = 2e-38 Identities = 206/245 (84%), Gaps = 1/245 (0%) Strand = Plus / Minus Query: 333 acctgcgtccagaaccaagactcgatcacagtccatgaccgtcggtatcctgtgcgcaat 392 |||||| ||||| |||| |||| |||||| |||||||| || ||||| ||||| ||||| Sbjct: 11005 acctgcatccagcaccagaactctatcacaatccatgactgttggtattctgtgtgcaat 10946 Query: 393 gctgatgattgtacaggatgagaactgctctcgcgtgatcttctgaatcgtcgcgtcagt 452 ||| || |||||||| || || || | | ||| ||||||||||| ||||| || ||||| Sbjct: 10945 gctaattattgtacatgaagaaaattcttgtcgtgtgatcttctgtatcgtggcatcagt 10886 Query: 453 ttgagaatcaactgaagcagttgcctcgtccataaataagatttggttctgcttcaggat 512 ||||||||||||||||||||||||||| ||||||||||| ||| | || |||||| || Sbjct: 10885 ttgagaatcaactgaagcagttgcctcatccataaataatattcgagtccgcttcaatat 10826 Query: 513 cacccggccaaggcacagaagctgtctttggcctacgcttccagttctccccgctatcag 572 || |||||||| || |||||||| ||||||||||| | ||||||||||||| ||||||| Sbjct: 10825 gacgcggccaagacaaagaagctgcctttggcctacac-tccagttctccccactatcag 10767 Query: 573 ccact 577 ||||| Sbjct: 10766 ccact 10762 Score = 65.9 bits (33), Expect = 2e-07 Identities = 61/69 (88%), Gaps = 1/69 (1%) Strand = Plus / Minus Query: 576 ctagagcatcgagcttttcagcttttgaagccactacatcttttcagttggcaacgctcc 635 |||||||||| || |||| || ||||||||| |||||||| |||||||||||| | |||| Sbjct: 10104 ctagagcatcaagtttttgaggttttgaagcaactacatc-tttcagttggcagccctcc 10046 Query: 636 agagcctgc 644 ||||||||| Sbjct: 10045 agagcctgc 10037 Score = 60.0 bits (30), Expect = 1e-05 Identities = 55/62 (88%), Gaps = 1/62 (1%) Strand = Plus / Minus Query: 643 gccatatttgagcatctgaatactgcccaactggattcaatgttacttcgaatcgtccct 702 ||||||| | |||||||||||||||||||| |||| |||||||| |||||||| || ||| Sbjct: 9933 gccatatctcagcatctgaatactgcccaattgga-tcaatgttgcttcgaattgttcct 9875 Query: 703 tc 704 || Sbjct: 9874 tc 9873
>emb|AL606994.3|OSJN00114 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0035O13, complete sequence Length = 143298 Score = 168 bits (85), Expect = 2e-38 Identities = 206/245 (84%), Gaps = 1/245 (0%) Strand = Plus / Plus Query: 333 acctgcgtccagaaccaagactcgatcacagtccatgaccgtcggtatcctgtgcgcaat 392 |||||| ||||| |||| |||| |||||| |||||||| || ||||| ||||| ||||| Sbjct: 127755 acctgcatccagcaccagaactctatcacaatccatgactgttggtattctgtgtgcaat 127814 Query: 393 gctgatgattgtacaggatgagaactgctctcgcgtgatcttctgaatcgtcgcgtcagt 452 ||| || |||||||| || || || | | ||| ||||||||||| ||||| || ||||| Sbjct: 127815 gctaattattgtacatgaagaaaattcttgtcgtgtgatcttctgtatcgtggcatcagt 127874 Query: 453 ttgagaatcaactgaagcagttgcctcgtccataaataagatttggttctgcttcaggat 512 ||||||||||||||||||||||||||| ||||||||||| ||| | || |||||| || Sbjct: 127875 ttgagaatcaactgaagcagttgcctcatccataaataatattcgagtccgcttcaatat 127934 Query: 513 cacccggccaaggcacagaagctgtctttggcctacgcttccagttctccccgctatcag 572 || |||||||| || |||||||| ||||||||||| | ||||||||||||| ||||||| Sbjct: 127935 gacgcggccaagacaaagaagctgcctttggcctacac-tccagttctccccactatcag 127993 Query: 573 ccact 577 ||||| Sbjct: 127994 ccact 127998 Score = 65.9 bits (33), Expect = 2e-07 Identities = 61/69 (88%), Gaps = 1/69 (1%) Strand = Plus / Plus Query: 576 ctagagcatcgagcttttcagcttttgaagccactacatcttttcagttggcaacgctcc 635 |||||||||| || |||| || ||||||||| ||||||||| ||||||||||| | |||| Sbjct: 128656 ctagagcatcaagtttttgaggttttgaagcaactacatct-ttcagttggcagccctcc 128714 Query: 636 agagcctgc 644 ||||||||| Sbjct: 128715 agagcctgc 128723 Score = 60.0 bits (30), Expect = 1e-05 Identities = 55/62 (88%), Gaps = 1/62 (1%) Strand = Plus / Plus Query: 643 gccatatttgagcatctgaatactgcccaactggattcaatgttacttcgaatcgtccct 702 ||||||| | |||||||||||||||||||| |||| |||||||| |||||||| || ||| Sbjct: 128827 gccatatctcagcatctgaatactgcccaattgga-tcaatgttgcttcgaattgttcct 128885 Query: 703 tc 704 || Sbjct: 128886 tc 128887
>ref|NM_193977.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 4446 Score = 107 bits (54), Expect = 5e-20 Identities = 141/170 (82%) Strand = Plus / Minus Query: 361 cagtccatgaccgtcggtatcctgtgcgcaatgctgatgattgtacaggatgagaactgc 420 ||||||||||||||||||||||||||||| ||||||||||| || |||| |||||||| Sbjct: 4319 cagtccatgaccgtcggtatcctgtgcgcgatgctgatgatggtgcaggctgagaactct 4260 Query: 421 tctcgcgtgatcttctgaatcgtcgcgtcagtttgagaatcaactgaagcagttgcctcg 480 || || |||||||||||||| || || ||| | ||||| ||||||||||| |||||| Sbjct: 4259 tcccggatgatcttctgaatcacggcatcggttcgggaatccactgaagcagtggcctcg 4200 Query: 481 tccataaataagatttggttctgcttcaggatcacccggccaaggcacag 530 ||||| || | || | | |||||||| ||||| |||||||||||||| Sbjct: 4199 tccatgaacagtatcctgctgtgcttcagcatcactcggccaaggcacag 4150
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 107 bits (54), Expect = 5e-20 Identities = 141/170 (82%) Strand = Plus / Plus Query: 361 cagtccatgaccgtcggtatcctgtgcgcaatgctgatgattgtacaggatgagaactgc 420 ||||||||||||||||||||||||||||| ||||||||||| || |||| |||||||| Sbjct: 14323777 cagtccatgaccgtcggtatcctgtgcgcgatgctgatgatggtgcaggctgagaactct 14323836 Query: 421 tctcgcgtgatcttctgaatcgtcgcgtcagtttgagaatcaactgaagcagttgcctcg 480 || || |||||||||||||| || || ||| | ||||| ||||||||||| |||||| Sbjct: 14323837 tcccggatgatcttctgaatcacggcatcggttcgggaatccactgaagcagtggcctcg 14323896 Query: 481 tccataaataagatttggttctgcttcaggatcacccggccaaggcacag 530 ||||| || | || | | |||||||| ||||| |||||||||||||| Sbjct: 14323897 tccatgaacagtatcctgctgtgcttcagcatcactcggccaaggcacag 14323946
>dbj|AP003207.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1157F09 Length = 148802 Score = 107 bits (54), Expect = 5e-20 Identities = 141/170 (82%) Strand = Plus / Plus Query: 361 cagtccatgaccgtcggtatcctgtgcgcaatgctgatgattgtacaggatgagaactgc 420 ||||||||||||||||||||||||||||| ||||||||||| || |||| |||||||| Sbjct: 75054 cagtccatgaccgtcggtatcctgtgcgcgatgctgatgatggtgcaggctgagaactct 75113 Query: 421 tctcgcgtgatcttctgaatcgtcgcgtcagtttgagaatcaactgaagcagttgcctcg 480 || || |||||||||||||| || || ||| | ||||| ||||||||||| |||||| Sbjct: 75114 tcccggatgatcttctgaatcacggcatcggttcgggaatccactgaagcagtggcctcg 75173 Query: 481 tccataaataagatttggttctgcttcaggatcacccggccaaggcacag 530 ||||| || | || | | |||||||| ||||| |||||||||||||| Sbjct: 75174 tccatgaacagtatcctgctgtgcttcagcatcactcggccaaggcacag 75223
>dbj|AP002870.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0458A05 Length = 120593 Score = 107 bits (54), Expect = 5e-20 Identities = 141/170 (82%) Strand = Plus / Plus Query: 361 cagtccatgaccgtcggtatcctgtgcgcaatgctgatgattgtacaggatgagaactgc 420 ||||||||||||||||||||||||||||| ||||||||||| || |||| |||||||| Sbjct: 119467 cagtccatgaccgtcggtatcctgtgcgcgatgctgatgatggtgcaggctgagaactct 119526 Query: 421 tctcgcgtgatcttctgaatcgtcgcgtcagtttgagaatcaactgaagcagttgcctcg 480 || || |||||||||||||| || || ||| | ||||| ||||||||||| |||||| Sbjct: 119527 tcccggatgatcttctgaatcacggcatcggttcgggaatccactgaagcagtggcctcg 119586 Query: 481 tccataaataagatttggttctgcttcaggatcacccggccaaggcacag 530 ||||| || | || | | |||||||| ||||| |||||||||||||| Sbjct: 119587 tccatgaacagtatcctgctgtgcttcagcatcactcggccaaggcacag 119636
>emb|AJ535074.1|OSA535074 Oryza sativa (japonica cultivar-group) mrp8 gene for MRP-like ABC transporter, exons 1-11 Length = 16621 Score = 107 bits (54), Expect = 5e-20 Identities = 141/170 (82%) Strand = Plus / Minus Query: 361 cagtccatgaccgtcggtatcctgtgcgcaatgctgatgattgtacaggatgagaactgc 420 ||||||||||||||||||||||||||||| ||||||||||| || |||| |||||||| Sbjct: 16347 cagtccatgaccgtcggtatcctgtgcgcgatgctgatgatggtgcaggctgagaactct 16288 Query: 421 tctcgcgtgatcttctgaatcgtcgcgtcagtttgagaatcaactgaagcagttgcctcg 480 || || |||||||||||||| || || ||| | ||||| ||||||||||| |||||| Sbjct: 16287 tcccggatgatcttctgaatcacggcatcggttcgggaatccactgaagcagtggcctcg 16228 Query: 481 tccataaataagatttggttctgcttcaggatcacccggccaaggcacag 530 ||||| || | || | | |||||||| ||||| |||||||||||||| Sbjct: 16227 tccatgaacagtatcctgctgtgcttcagcatcactcggccaaggcacag 16178
>gb|AY064479.1| Triticum aestivum multidrug resistance-associated protein MRP1 mRNA, partial cds Length = 2647 Score = 85.7 bits (43), Expect = 2e-13 Identities = 46/47 (97%) Strand = Plus / Minus Query: 361 cagtccatgaccgtcggtatcctgtgcgcaatgctgatgattgtaca 407 ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 2170 cagtccatgaccgtcggtatcctgtgcgcaatgctgatgatggtaca 2124
>ref|XM_474857.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 4539 Score = 77.8 bits (39), Expect = 4e-11 Identities = 236/299 (78%), Gaps = 2/299 (0%) Strand = Plus / Minus Query: 351 gactcgatcacagtccatgaccgtcggtatcctgtgcgcaatgctgatgattgtacagga 410 ||||| ||||| ||||||||| |||||||| | |||||||||||||||||| || || Sbjct: 4410 gactctatcactgtccatgacagtcggtatgcggtgcgcaatgctgatgatagtgcaatc 4351 Query: 411 tgagaactgctctcgcgtgatcttctgaatcgtcgcgtcagtttgagaatcaactgaagc 470 | ||||| ||||| ||||| |||| || ||||| || || ||||||||||| ||||| Sbjct: 4350 agtgaactcttctcggatgatcctctggatagtcgcatctgtctgagaatcaacggaagc 4291 Query: 471 agttgcctcgtccataaataagatttggttctgcttcaggatcacccggccaaggcacag 530 |||||||| ||||| || | ||| || | ||||||| || || || |||| ||| || Sbjct: 4290 tgttgcctcatccatgaacaggatccggctgcgcttcagaataacacgaccaaagcagag 4231 Query: 531 aagctgtctttggcctacgcttccagttctccccgctatcagccactagagcatcgagct 590 ||||| | || ||||||| ||||||||||||| | || || ||||| ||||| || | Sbjct: 4230 gagctgcttctgtcctacgc-tccagttctcccccatgtcggcaactagtgcatcaagtt 4172 Query: 591 tttcagcttttgaagccactacatcttttcagttggcaacgctccagagcctgccatat 649 | || | ||||| ||| |||| ||||||| ||||| |||||||| || ||||||||||| Sbjct: 4171 tctctggttttgtagctactatatctttt-agttgacaacgctcaagggcctgccatat 4114
>dbj|AK120122.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013026A05, full insert sequence Length = 4968 Score = 77.8 bits (39), Expect = 4e-11 Identities = 236/299 (78%), Gaps = 2/299 (0%) Strand = Plus / Minus Query: 351 gactcgatcacagtccatgaccgtcggtatcctgtgcgcaatgctgatgattgtacagga 410 ||||| ||||| ||||||||| |||||||| | |||||||||||||||||| || || Sbjct: 4527 gactctatcactgtccatgacagtcggtatgcggtgcgcaatgctgatgatagtgcaatc 4468 Query: 411 tgagaactgctctcgcgtgatcttctgaatcgtcgcgtcagtttgagaatcaactgaagc 470 | ||||| ||||| ||||| |||| || ||||| || || ||||||||||| ||||| Sbjct: 4467 agtgaactcttctcggatgatcctctggatagtcgcatctgtctgagaatcaacggaagc 4408 Query: 471 agttgcctcgtccataaataagatttggttctgcttcaggatcacccggccaaggcacag 530 |||||||| ||||| || | ||| || | ||||||| || || || |||| ||| || Sbjct: 4407 tgttgcctcatccatgaacaggatccggctgcgcttcagaataacacgaccaaagcagag 4348 Query: 531 aagctgtctttggcctacgcttccagttctccccgctatcagccactagagcatcgagct 590 ||||| | || ||||||| ||||||||||||| | || || ||||| ||||| || | Sbjct: 4347 gagctgcttctgtcctacgc-tccagttctcccccatgtcggcaactagtgcatcaagtt 4289 Query: 591 tttcagcttttgaagccactacatcttttcagttggcaacgctccagagcctgccatat 649 | || | ||||| ||| |||| ||||||| ||||| |||||||| || ||||||||||| Sbjct: 4288 tctctggttttgtagctactatatctttt-agttgacaacgctcaagggcctgccatat 4231
>emb|AL663001.3|OSJN00197 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0022P19, complete sequence Length = 135836 Score = 69.9 bits (35), Expect = 1e-08 Identities = 110/135 (81%) Strand = Plus / Plus Query: 351 gactcgatcacagtccatgaccgtcggtatcctgtgcgcaatgctgatgattgtacagga 410 ||||| ||||| ||||||||| |||||||| | |||||||||||||||||| || || Sbjct: 7135 gactctatcactgtccatgacagtcggtatgcggtgcgcaatgctgatgatagtgcaatc 7194 Query: 411 tgagaactgctctcgcgtgatcttctgaatcgtcgcgtcagtttgagaatcaactgaagc 470 | ||||| ||||| ||||| |||| || ||||| || || ||||||||||| ||||| Sbjct: 7195 agtgaactcttctcggatgatcctctggatagtcgcatctgtctgagaatcaacggaagc 7254 Query: 471 agttgcctcgtccat 485 |||||||| ||||| Sbjct: 7255 tgttgcctcatccat 7269
>emb|AJ535072.1|OSA535072 Oryza sativa (japonica cultivar-group) mrp10 gene for MRP-like ABC transporter, exons 1-11 Length = 8122 Score = 69.9 bits (35), Expect = 1e-08 Identities = 110/135 (81%) Strand = Plus / Minus Query: 351 gactcgatcacagtccatgaccgtcggtatcctgtgcgcaatgctgatgattgtacagga 410 ||||| ||||| ||||||||| |||||||| | |||||||||||||||||| || || Sbjct: 7835 gactctatcactgtccatgacagtcggtatgcggtgcgcaatgctgatgatagtgcaatc 7776 Query: 411 tgagaactgctctcgcgtgatcttctgaatcgtcgcgtcagtttgagaatcaactgaagc 470 | ||||| ||||| ||||| |||| || ||||| || || ||||||||||| ||||| Sbjct: 7775 agtgaactcttctcggatgatcctctggatagtcgcatctgtctgagaatcaacggaagc 7716 Query: 471 agttgcctcgtccat 485 |||||||| ||||| Sbjct: 7715 tgttgcctcatccat 7701
>gb|AC161032.19| Medicago truncatula clone mth2-21b7, complete sequence Length = 130355 Score = 67.9 bits (34), Expect = 4e-08 Identities = 55/62 (88%) Strand = Plus / Minus Query: 345 aaccaagactcgatcacagtccatgaccgtcggtatcctgtgcgcaatgctgatgattgt 404 |||||| |||||||| |||||||||||||| |||||||| || ||||| |||||||| || Sbjct: 74423 aaccaacactcgatcgcagtccatgaccgttggtatcctatgagcaatactgatgatggt 74364 Query: 405 ac 406 || Sbjct: 74363 ac 74362 Score = 56.0 bits (28), Expect = 2e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 451 gtttgagaatcaactgaagcagttgcctcgtccataaata 490 |||||||||||||| ||||| || |||||||||||||||| Sbjct: 74317 gtttgagaatcaacagaagctgtagcctcgtccataaata 74278
>gb|AC155335.1| Brassica rapa subsp. pekinensis chromosome Cytogenetic chromosome 1 clone KBrH001H24, complete sequence Length = 118144 Score = 60.0 bits (30), Expect = 1e-05 Identities = 54/62 (87%) Strand = Plus / Plus Query: 355 cgatcacagtccatgaccgtcggtatcctgtgcgcaatgctgatgattgtacaggatgag 414 |||||||||||||| ||||| || ||||| || |||||||||||||| ||||| || ||| Sbjct: 53684 cgatcacagtccataaccgttggaatcctatgagcaatgctgatgatggtacaagacgag 53743 Query: 415 aa 416 || Sbjct: 53744 aa 53745
>gb|AY107851.1| Zea mays PCO143234 mRNA sequence Length = 1449 Score = 58.0 bits (29), Expect = 4e-05 Identities = 101/125 (80%) Strand = Plus / Minus Query: 361 cagtccatgaccgtcggtatcctgtgcgcaatgctgatgattgtacaggatgagaactgc 420 |||||||| ||||| ||||| ||||||||||||||||| || ||||| | || || | Sbjct: 948 cagtccatcaccgtaggtattctgtgcgcaatgctgataatggtacaagctgcaaagtct 889 Query: 421 tctcgcgtgatcttctgaatcgtcgcgtcagtttgagaatcaactgaagcagttgcctcg 480 || || |||||||||||||| || || || || |||||||| |||||||| |||||| Sbjct: 888 tcccggatgatcttctgaatcacagcatcggtctgggaatcaacggaagcagtggcctcg 829 Query: 481 tccat 485 ||||| Sbjct: 828 tccat 824
>gb|AY818154.1| Phormium cookianum clone PhN4R3 putative protein mRNA, partial cds Length = 591 Score = 54.0 bits (27), Expect = 6e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 346 accaagactcgatcacagtccatgaccgtcggtatcctgtgcgcaatgctgatgattgt 404 ||||| |||| |||||||||||| || || ||||| || || ||||||||||||||||| Sbjct: 173 accaaaactctatcacagtccatcactgttggtattctatgagcaatgctgatgattgt 115
>ref|NM_130347.2| Arabidopsis thaliana ATMRP4 AT2G47800 (ATMRP4) mRNA, complete cds Length = 4745 Score = 46.1 bits (23), Expect = 0.16 Identities = 47/55 (85%) Strand = Plus / Minus Query: 428 tgatcttctgaatcgtcgcgtcagtttgagaatcaactgaagcagttgcctcgtc 482 |||||||||||||| ||||| ||||| |||||||| || |||||||| ||||| Sbjct: 4357 tgatcttctgaatcacggcgtcggtttgggaatcaacggatgcagttgcttcgtc 4303 Score = 40.1 bits (20), Expect = 9.6 Identities = 57/68 (83%), Gaps = 1/68 (1%) Strand = Plus / Minus Query: 529 agaagctgtctttggcctacgcttccagttctccccgctatcagccactagagcatcgag 588 |||||||| || || |||||||| |||||||||||| ||||| |||| | || |||||| Sbjct: 4256 agaagctgcctctgccctacgct-ccagttctccccattatcaaccaccaaagaatcgag 4198 Query: 589 cttttcag 596 ||| |||| Sbjct: 4197 cttctcag 4190
>emb|AJ002584.1|ATDNAMRP4 Arabidopsis thaliana DNA for the glutathione-conjugate transporter AtMRP4 Length = 6923 Score = 46.1 bits (23), Expect = 0.16 Identities = 47/55 (85%) Strand = Plus / Minus Query: 428 tgatcttctgaatcgtcgcgtcagtttgagaatcaactgaagcagttgcctcgtc 482 |||||||||||||| ||||| ||||| |||||||| || |||||||| ||||| Sbjct: 6262 tgatcttctgaatcacggcgtcggtttgggaatcaacggatgcagttgcttcgtc 6208
>gb|AC005309.3| Arabidopsis thaliana chromosome 2 clone F17A22 map CIC06C03, complete sequence Length = 106355 Score = 46.1 bits (23), Expect = 0.16 Identities = 47/55 (85%) Strand = Plus / Minus Query: 428 tgatcttctgaatcgtcgcgtcagtttgagaatcaactgaagcagttgcctcgtc 482 |||||||||||||| ||||| ||||| |||||||| || |||||||| ||||| Sbjct: 47542 tgatcttctgaatcacggcgtcggtttgggaatcaacggatgcagttgcttcgtc 47488
>gb|AF243509.1|AF243509 Arabidopsis thaliana MRP4 mRNA, complete cds Length = 4696 Score = 46.1 bits (23), Expect = 0.16 Identities = 47/55 (85%) Strand = Plus / Minus Query: 428 tgatcttctgaatcgtcgcgtcagtttgagaatcaactgaagcagttgcctcgtc 482 |||||||||||||| ||||| ||||| |||||||| || |||||||| ||||| Sbjct: 4357 tgatcttctgaatcacggcgtcggtttgggaatcaacggatgcagttgcttcgtc 4303 Score = 40.1 bits (20), Expect = 9.6 Identities = 57/68 (83%), Gaps = 1/68 (1%) Strand = Plus / Minus Query: 529 agaagctgtctttggcctacgcttccagttctccccgctatcagccactagagcatcgag 588 |||||||| || || |||||||| |||||||||||| ||||| |||| | || |||||| Sbjct: 4256 agaagctgcctctgccctacgct-ccagttctccccattatcaaccaccaaagaatcgag 4198 Query: 589 cttttcag 596 ||| |||| Sbjct: 4197 cttctcag 4190
>gb|U96399.1|ATU96399 Arabidopsis thaliana MRP-like ABC transporter mRNA, partial cds Length = 736 Score = 46.1 bits (23), Expect = 0.16 Identities = 47/55 (85%) Strand = Plus / Minus Query: 428 tgatcttctgaatcgtcgcgtcagtttgagaatcaactgaagcagttgcctcgtc 482 |||||||||||||| ||||| ||||| |||||||| || |||||||| ||||| Sbjct: 544 tgatcttctgaatcacggcgtcggtttgggaatcaacggatgcagttgcttcgtc 490 Score = 40.1 bits (20), Expect = 9.6 Identities = 57/68 (83%), Gaps = 1/68 (1%) Strand = Plus / Minus Query: 529 agaagctgtctttggcctacgcttccagttctccccgctatcagccactagagcatcgag 588 |||||||| || || |||||||| |||||||||||| ||||| |||| | || |||||| Sbjct: 443 agaagctgcctctgccctacgct-ccagttctccccattatcaaccaccaaagaatcgag 385 Query: 589 cttttcag 596 ||| |||| Sbjct: 384 cttctcag 377
>ref|NM_116135.2| Arabidopsis thaliana ATMRP10 AT3G62700 (ATMRP10) mRNA, complete cds Length = 4816 Score = 44.1 bits (22), Expect = 0.62 Identities = 46/54 (85%) Strand = Plus / Minus Query: 355 cgatcacagtccatgaccgtcggtatcctgtgcgcaatgctgatgattgtacag 408 |||||||||||||| || || || ||||| || ||||||||||| || |||||| Sbjct: 4534 cgatcacagtccataactgttggaatcctatgagcaatgctgataatggtacag 4481
>emb|AL162651.1|ATF26K9 Arabidopsis thaliana DNA chromosome 3, BAC clone F26K9 Length = 110257 Score = 44.1 bits (22), Expect = 0.62 Identities = 46/54 (85%) Strand = Plus / Plus Query: 355 cgatcacagtccatgaccgtcggtatcctgtgcgcaatgctgatgattgtacag 408 |||||||||||||| || || || ||||| || ||||||||||| || |||||| Sbjct: 43601 cgatcacagtccataactgttggaatcctatgagcaatgctgataatggtacag 43654
>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome Length = 4607203 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 553 ccagttctccccgctatcagccact 577 |||||||||||||||||| |||||| Sbjct: 4559597 ccagttctccccgctatctgccact 4559573
>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome Length = 4599354 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 553 ccagttctccccgctatcagccact 577 |||||||||||||||||| |||||| Sbjct: 4551750 ccagttctccccgctatctgccact 4551726
>gb|AC112967.14| Mus musculus chromosome 19, clone RP24-151O21, complete sequence Length = 167743 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 43 acttaaatacaacagcctttctaaa 67 ||||||| ||||||||||||||||| Sbjct: 15982 acttaaacacaacagcctttctaaa 15958
>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome Length = 5528445 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 553 ccagttctccccgctatcagccact 577 |||||||||||||||||| |||||| Sbjct: 5481652 ccagttctccccgctatctgccact 5481628
>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome Length = 5498450 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 553 ccagttctccccgctatcagccact 577 |||||||||||||||||| |||||| Sbjct: 5451659 ccagttctccccgctatctgccact 5451635
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 425 gcgtgatcttctgaatcgtc 444 |||||||||||||||||||| Sbjct: 2410769 gcgtgatcttctgaatcgtc 2410750
>ref|XM_473702.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3408 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 460 tcaactgaagcagttgcctc 479 |||||||||||||||||||| Sbjct: 3143 tcaactgaagcagttgcctc 3124
>ref|XM_656206.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN3694.2), mRNA Length = 1059 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 cgtcgaattccttcaccaga 333 |||||||||||||||||||| Sbjct: 568 cgtcgaattccttcaccaga 549
>gb|AC127027.13| Mus musculus chromosome 5, clone RP23-236G19, complete sequence Length = 195654 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 caacttaaatacaacagcct 60 |||||||||||||||||||| Sbjct: 169994 caacttaaatacaacagcct 169975
>gb|AC083884.6| Homo sapiens BAC clone RP11-813J7 from 7, complete sequence Length = 169604 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 470 cagttgcctcgtccataaat 489 |||||||||||||||||||| Sbjct: 6935 cagttgcctcgtccataaat 6916
>gb|AC140298.3| Mus musculus BAC clone RP24-319I6 from chromosome 18, complete sequence Length = 148703 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 gcctttctaaatgacaccac 76 |||||||||||||||||||| Sbjct: 81085 gcctttctaaatgacaccac 81104
>emb|AL592151.13| Human DNA sequence from clone RP11-351N5 on chromosome 1 Contains a novel gene, the 5' end of the AKT3 gene for v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma) and a CpG island, complete sequence Length = 148345 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 tagatggtggaaacaaaatt 36 |||||||||||||||||||| Sbjct: 138002 tagatggtggaaacaaaatt 138021
>emb|AL606658.5|OSJN00098 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0016D16, complete sequence Length = 133113 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 460 tcaactgaagcagttgcctc 479 |||||||||||||||||||| Sbjct: 121992 tcaactgaagcagttgcctc 121973
>gb|AC018781.9| Homo sapiens chromosome 8, clone RP11-302J23, complete sequence Length = 190984 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 agatgctagaggttggagga 245 |||||||||||||||||||| Sbjct: 15329 agatgctagaggttggagga 15348
>gb|AC004883.3| Homo sapiens PAC clone RP4-771P4 from 7q11.2, complete sequence Length = 131359 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 cagttgcctcgtccataaat 489 |||||||||||||||||||| Sbjct: 127554 cagttgcctcgtccataaat 127573
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 gtcggcgtactcctcgacca 268 |||||||||||||||||||| Sbjct: 5217407 gtcggcgtactcctcgacca 5217388
>gb|AF304813.1| Diopsis gnu wingless (wg) gene, partial cds Length = 690 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 aacaacagcactgggggcat 96 |||||||||||||||||||| Sbjct: 183 aacaacagcactgggggcat 164
>dbj|AK099941.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013121A05, full insert sequence Length = 4249 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 460 tcaactgaagcagttgcctc 479 |||||||||||||||||||| Sbjct: 3795 tcaactgaagcagttgcctc 3776
>gb|AC155950.2| Xenopus tropicalis clone CH216-103N11, complete sequence Length = 146670 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 647 tatttgagcatctgaatact 666 |||||||||||||||||||| Sbjct: 5584 tatttgagcatctgaatact 5565
>dbj|AK064493.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-111-C07, full insert sequence Length = 1576 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 591 tttcagcttttgaagccact 610 |||||||||||||||||||| Sbjct: 501 tttcagcttttgaagccact 482
>emb|AJ535075.1|OSA535075 Oryza sativa (japonica cultivar-group) mrp7 gene for MRP-like ABC transporter, exons 1-11 Length = 6142 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 460 tcaactgaagcagttgcctc 479 |||||||||||||||||||| Sbjct: 5790 tcaactgaagcagttgcctc 5771
>dbj|AP003469.3| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1460A1 Length = 138706 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 agatgctagaggttggagga 245 |||||||||||||||||||| Sbjct: 33962 agatgctagaggttggagga 33943
>emb|AL662981.3|OSJN00182 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086O06, complete sequence Length = 178552 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 460 tcaactgaagcagttgcctc 479 |||||||||||||||||||| Sbjct: 15698 tcaactgaagcagttgcctc 15679
>emb|AL731735.14| Mouse DNA sequence from clone RP23-139P21 on chromosome X, complete sequence Length = 201223 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 454 tgagaatcaactgaagcagt 473 |||||||||||||||||||| Sbjct: 31336 tgagaatcaactgaagcagt 31317
>dbj|AP003689.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1139G1 Length = 155359 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 agatgctagaggttggagga 245 |||||||||||||||||||| Sbjct: 145828 agatgctagaggttggagga 145809 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,785,272 Number of Sequences: 3902068 Number of extensions: 5785272 Number of successful extensions: 99418 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 99137 Number of HSP's gapped (non-prelim): 267 length of query: 704 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 681 effective length of database: 17,143,297,704 effective search space: 11674585736424 effective search space used: 11674585736424 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
