>TRIM7_HUMAN (Q9C029) Tripartite motif protein 7 (Glycogenin-interacting|
           protein) (RING finger protein 90)
          Length = 511

 Score = 32.3 bits (72), Expect = 0.67
 Identities = 16/59 (27%), Positives = 32/59 (54%)
 Frame = -2

Query: 389 DQKIQASQDMMA*KQNVCNGGHEHFKIFNQQEKM*LREILSKFHAGHDQIGATVQQLRA 213
           D+ +Q +++++  +  V     E  ++F   EK   +E+L +  A  +++GA  Q LRA
Sbjct: 167 DEAVQEAKELLESRLRVLKKELEDCEVFRSTEKKESKELLKQMAAEQEKVGAEFQALRA 225

>RL103_ORYSA (Q40649) 60S ribosomal protein L10-3 (QM/R22)|
          Length = 219

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
 Frame = -1

Query: 459 MGSRDSTRQYKQ*THREHLQRSY--GSKDTSIARYD-GMKAKCVQRRSRALQNIQPAREN 289
           MG R + R Y+Q  ++ + +  Y  G  D  I  YD GMK K V   S  +  +   +EN
Sbjct: 1   MGRRPA-RCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKEN 59

Query: 288 VTTR--DSKQVSCRTRSNRSYG 229
           VT+   ++ +++C     +S G
Sbjct: 60  VTSEALEAARIACNKYMTKSAG 81

>VE2_HPV49 (P36795) Regulatory protein E2|
          Length = 488

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
 Frame = -1

Query: 393 YGSKDTSIARYDGMKAKCVQRRSRALQNIQPARENVTTRDSKQVSCRTRSNR-------S 235
           YG KD+S       + +  +RRSR+    +  RE  T+R  K    R+RS         S
Sbjct: 261 YGRKDSSPTAASNSRKEVSRRRSRSRTRTR-RREASTSRSQKASRSRSRSRSTSRGSRGS 319

Query: 234 YGSTTTSK 211
            GS TTS+
Sbjct: 320 GGSVTTSR 327

>CREA_GIBFU (O94131) DNA-binding protein creA (Carbon catabolite repressor)|
          Length = 420

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 6/102 (5%)
 Frame = -1

Query: 474 HHGYFMGSRDSTRQYKQ*THREHLQRSYGSKDTSIARYDGMKAKCVQRRSRALQNIQPAR 295
           HH YF     S+R +       H+ RS+ ++D S   Y G      + R  +  +  P+ 
Sbjct: 227 HHPYFGHGMHSSRGHLPTLSSYHMGRSHSNEDPSDDHYSGAMRHAKRSRPNSPNSTAPSS 286

Query: 294 ENVT------TRDSKQVSCRTRSNRSYGSTTTSKTRNLHNLS 187
              +      T D   ++    S R    +T  +  +L NLS
Sbjct: 287 PTFSHDSLSPTPDHTPIATPAHSPRLRPFSTGYELPSLRNLS 328

>RIF1_HUMAN (Q5UIP0) Telomere-associated protein RIF1 (Rap1-interacting factor 1|
            homolog)
          Length = 2472

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 24/98 (24%), Positives = 44/98 (44%)
 Frame = -2

Query: 416  IENISNGATDQKIQASQDMMA*KQNVCNGGHEHFKIFNQQEKM*LREILSKFHAGHDQIG 237
            IEN  + +++ K + S+   + K    N  +E   I +Q+EK+  +E +   +  HD   
Sbjct: 1549 IENSESDSSEAKEEGSRKKRSGKWK--NKSNESVDIQDQEEKVVKQECIKAENQSHDYKA 1606

Query: 236  ATVQQLRAKQEIFTICQKQPHGSLYASQLRLHNSDKLK 123
             + + +  K     IC+KQ   +    Q     SD L+
Sbjct: 1607 TSEEDVSIKS---PICEKQDESNTVICQDSTVTSDLLQ 1641

>VE2_HPV05 (P06921) Regulatory protein E2|
          Length = 514

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 27/83 (32%), Positives = 42/83 (50%)
 Frame = -1

Query: 429 KQ*THREHLQRSYGSKDTSIARYDGMKAKCVQRRSRALQNIQPARENVTTRDSKQVSCRT 250
           KQ    E   R YG + +S +R    +++  QRRSR+      +R    +R SK  +  T
Sbjct: 238 KQPQQTETRGRRYGRRPSSKSR----RSQTQQRRSRSRHR---SRSRSRSR-SKSQTHTT 289

Query: 249 RSNRSYGSTTTSKTRNLHNLSKT 181
           RS     ST+ +KTR L + S++
Sbjct: 290 RSTTRSRSTSLTKTRALTSRSRS 312

>MASTL_HUMAN (Q96GX5) Microtubule-associated serine/threonine-protein|
           kinase-like (EC 2.7.11.1)
          Length = 879

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 321 ALQNIQPARENVTTRDSKQVSCRTRSNRSYGSTTTSKTRN 202
           A  N +P+R N+T+ D+  +SC    +     T T K R+
Sbjct: 664 ASNNSEPSRMNMTSLDAMDISCAYSGSYPMAITPTQKRRS 703

>DDX46_MOUSE (Q569Z5) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)|
           (DEAD box protein 46)
          Length = 1032

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -1

Query: 333 RRSRALQNIQPA-RENVTTRDSKQVSCRTRSNRSYGSTTTSKTRNLHNLSKT 181
           RRSR+ +  +   R    +RD ++   R+R  RS  S+  SKT+   N S++
Sbjct: 69  RRSRSRERDRSRERRRSRSRDRRRSRSRSRGRRSRSSSPGSKTKKTENRSRS 120

>VE2_HPV25 (P36787) Regulatory protein E2|
          Length = 502

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 31/139 (22%), Positives = 55/139 (39%)
 Frame = -1

Query: 450 RDSTRQYKQ*THREHLQRSYGSKDTSIARYDGMKAKCVQRRSRALQNIQPARENVTTRDS 271
           R S+R  +Q    +  QR   SK  S +R         + RSR+    Q ++    +R  
Sbjct: 250 RPSSRTRRQ--QAQARQRRSRSKSRSRSRSQSRSRIRSRSRSRSRSESQSSKRRSRSRSR 307

Query: 270 KQVSCRTRSNRSYGSTTTSKTRNLHNLSKTAPWQFIRLTTSATQLR*AQARHGTEEGKKH 91
           ++ S  TR       TTT+  R   + S T+     R   S ++   ++   G    ++H
Sbjct: 308 RKTSA-TRGRGPGSPTTTTSDRAARSPSTTSSATSQRSQRSRSRAGSSRGGRGRGGRRRH 366

Query: 90  YYEQLTTTSMAARSTRKTR 34
              +  T+  + R +   R
Sbjct: 367 RLSESPTSKRSRRESGSVR 385

>FKBP7_HUMAN (Q9Y680) FK506-binding protein 7 precursor (EC 5.2.1.8)|
           (Peptidyl-prolyl cis-trans isomerase) (PPIase)
           (Rotamase) (FKBP-23)
          Length = 259

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 11/21 (52%), Positives = 17/21 (80%), Gaps = 4/21 (19%)
 Frame = +3

Query: 339 HILLSCH----HILRCLYLLI 389
           +IL+SCH    H+L+C+YLL+
Sbjct: 135 NILVSCHRTTLHVLKCMYLLV 155


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,868,313
Number of Sequences: 219361
Number of extensions: 946932
Number of successful extensions: 2411
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2408
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)