ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5n09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL391423.16| Human DNA sequence from clone RP13-43J18 on chr... 42 2.0
2gb|AC135419.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.7
3gb|AC118009.7| Mus musculus chromosome 8, clone RP23-442H2, comp... 40 7.7
4gb|AC116321.4| Mus musculus BAC clone RP23-270L15 from chromosom... 40 7.7
5emb|AL391867.5| Human DNA sequence from clone RP11-402M4 on chro... 40 7.7
6emb|AL138776.10| Human DNA sequence from clone RP11-20H6 on chro... 40 7.7
7emb|AL022097.1|HS256G22 Human DNA sequence from clone RP1-256G22... 40 7.7
8emb|BX322655.10| Zebrafish DNA sequence from clone DKEYP-53E12 i... 40 7.7
9dbj|AK054505.1| Mus musculus 2 days pregnant adult female ovary ... 40 7.7
10dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
11dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
12dbj|AP003963.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
13dbj|AP003805.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
14gb|AY108867.1| Zea mays PCO098137 mRNA sequence 40 7.7
15dbj|AP002469.3| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 7.7
16dbj|AP002762.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 7.7
17emb|AL928713.16| Mouse DNA sequence from clone RP23-399M5 on chr... 40 7.7

>emb|AL391423.16| Human DNA sequence from clone RP13-43J18 on chromosome 10 Contains part
             of the gene for a novel protein (FLJ32798), complete
             sequence
          Length = 114294

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 191   acaagtaactgcagtcaggtt 211
             |||||||||||||||||||||
Sbjct: 71552 acaagtaactgcagtcaggtt 71532



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>gb|AC135419.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0044P19, complete sequence
          Length = 176917

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 461   atgtcttggggttggggggt 480
             ||||||||||||||||||||
Sbjct: 53194 atgtcttggggttggggggt 53175



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>gb|AC118009.7| Mus musculus chromosome 8, clone RP23-442H2, complete sequence
          Length = 208458

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 108   aaacaatcaaatatggcaga 127
             ||||||||||||||||||||
Sbjct: 35752 aaacaatcaaatatggcaga 35771



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>gb|AC116321.4| Mus musculus BAC clone RP23-270L15 from chromosome 2, complete sequence
          Length = 183636

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 87    agcttcctttgctgagtatg 106
             ||||||||||||||||||||
Sbjct: 39186 agcttcctttgctgagtatg 39167



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>emb|AL391867.5| Human DNA sequence from clone RP11-402M4 on chromosome 9, complete
              sequence
          Length = 164444

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 116    aaatatggcagagaaacaat 135
              ||||||||||||||||||||
Sbjct: 123160 aaatatggcagagaaacaat 123141



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>emb|AL138776.10| Human DNA sequence from clone RP11-20H6 on chromosome 1q25.1-31.1
             Contains the 3' end of the RGSL1 gene for regulator of
             G-protein signalling like 1, the RNASEL gene for
             ribonuclease L (2',5'-oligoisoadenylate
             synthetase-dependent) and a CpG island, complete sequence
          Length = 100549

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 219   ttcacctacccacagagtgg 238
             ||||||||||||||||||||
Sbjct: 55289 ttcacctacccacagagtgg 55270



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>emb|AL022097.1|HS256G22 Human DNA sequence from clone RP1-256G22 on chromosome 6p24.1-25.3
             Contains a heterogeneous nuclear ribonucleoprotein A0
             (HNRPA0) pseudogene and part of the gene for
             phenylalanine-tRNA synthetase (FARS1), complete sequence
          Length = 149140

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 207   aggttttcaactttcacctaccca 230
             ||||||||||||||||| ||||||
Sbjct: 17828 aggttttcaactttcacttaccca 17805



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>emb|BX322655.10| Zebrafish DNA sequence from clone DKEYP-53E12 in linkage group 8,
             complete sequence
          Length = 184723

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 449   gtgctgctccatatgtcttg 468
             ||||||||||||||||||||
Sbjct: 76747 gtgctgctccatatgtcttg 76766



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>dbj|AK054505.1| Mus musculus 2 days pregnant adult female ovary cDNA, RIKEN
            full-length enriched library, clone:E330033N02
            product:unclassifiable, full insert sequence
          Length = 3452

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 16   gagaaagaaacctatacatatctt 39
            |||||||| |||||||||||||||
Sbjct: 2523 gagaaagatacctatacatatctt 2546



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 35      atcttaattagctaaccaaa 54
               ||||||||||||||||||||
Sbjct: 6468224 atcttaattagctaaccaaa 6468205



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 461      atgtcttggggttggggggt 480
                ||||||||||||||||||||
Sbjct: 20739970 atgtcttggggttggggggt 20739951



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>dbj|AP003963.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1779_B07
          Length = 151427

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     atcttaattagctaaccaaa 54
              ||||||||||||||||||||
Sbjct: 124791 atcttaattagctaaccaaa 124772



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>dbj|AP003805.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1080_F08
          Length = 94139

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    atcttaattagctaaccaaa 54
             ||||||||||||||||||||
Sbjct: 25313 atcttaattagctaaccaaa 25294



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>gb|AY108867.1| Zea mays PCO098137 mRNA sequence
          Length = 719

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 55/64 (85%), Gaps = 2/64 (3%)
 Strand = Plus / Minus

                                                                       
Query: 372 ggctgtgaccttgtt-agccacggtgggcgtcatcgccaa-ctgcatcggagccgccacg 429
           |||| |||||||||| ||||||||  || ||||||||||| |||||| ||||||| ||| 
Sbjct: 645 ggctatgaccttgtttagccacggctggtgtcatcgccaatctgcataggagccgtcact 586

               
Query: 430 gtcg 433
           ||||
Sbjct: 585 gtcg 582



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>dbj|AP002469.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-266E8, complete
              sequence
          Length = 158977

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 237    ggagatcttgacatgtcttgacag 260
              |||| |||||||||||||||||||
Sbjct: 113482 ggaggtcttgacatgtcttgacag 113505



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>dbj|AP002762.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-811I7, complete
             sequence
          Length = 189993

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 237   ggagatcttgacatgtcttgacag 260
             |||| |||||||||||||||||||
Sbjct: 10317 ggaggtcttgacatgtcttgacag 10340



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>emb|AL928713.16| Mouse DNA sequence from clone RP23-399M5 on chromosome 2, complete
             sequence
          Length = 212028

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 87    agcttcctttgctgagtatg 106
             ||||||||||||||||||||
Sbjct: 11126 agcttcctttgctgagtatg 11107


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,037,710
Number of Sequences: 3902068
Number of extensions: 4037710
Number of successful extensions: 76772
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 76710
Number of HSP's gapped (non-prelim): 64
length of query: 568
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 545
effective length of database: 17,143,297,704
effective search space: 9343097248680
effective search space used: 9343097248680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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