| Clone Name | rbags5n09 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL391423.16| Human DNA sequence from clone RP13-43J18 on chromosome 10 Contains part of the gene for a novel protein (FLJ32798), complete sequence Length = 114294 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 191 acaagtaactgcagtcaggtt 211 ||||||||||||||||||||| Sbjct: 71552 acaagtaactgcagtcaggtt 71532
>gb|AC135419.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0044P19, complete sequence Length = 176917 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 461 atgtcttggggttggggggt 480 |||||||||||||||||||| Sbjct: 53194 atgtcttggggttggggggt 53175
>gb|AC118009.7| Mus musculus chromosome 8, clone RP23-442H2, complete sequence Length = 208458 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 aaacaatcaaatatggcaga 127 |||||||||||||||||||| Sbjct: 35752 aaacaatcaaatatggcaga 35771
>gb|AC116321.4| Mus musculus BAC clone RP23-270L15 from chromosome 2, complete sequence Length = 183636 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 agcttcctttgctgagtatg 106 |||||||||||||||||||| Sbjct: 39186 agcttcctttgctgagtatg 39167
>emb|AL391867.5| Human DNA sequence from clone RP11-402M4 on chromosome 9, complete sequence Length = 164444 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 116 aaatatggcagagaaacaat 135 |||||||||||||||||||| Sbjct: 123160 aaatatggcagagaaacaat 123141
>emb|AL138776.10| Human DNA sequence from clone RP11-20H6 on chromosome 1q25.1-31.1 Contains the 3' end of the RGSL1 gene for regulator of G-protein signalling like 1, the RNASEL gene for ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent) and a CpG island, complete sequence Length = 100549 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 ttcacctacccacagagtgg 238 |||||||||||||||||||| Sbjct: 55289 ttcacctacccacagagtgg 55270
>emb|AL022097.1|HS256G22 Human DNA sequence from clone RP1-256G22 on chromosome 6p24.1-25.3 Contains a heterogeneous nuclear ribonucleoprotein A0 (HNRPA0) pseudogene and part of the gene for phenylalanine-tRNA synthetase (FARS1), complete sequence Length = 149140 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 207 aggttttcaactttcacctaccca 230 ||||||||||||||||| |||||| Sbjct: 17828 aggttttcaactttcacttaccca 17805
>emb|BX322655.10| Zebrafish DNA sequence from clone DKEYP-53E12 in linkage group 8, complete sequence Length = 184723 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 449 gtgctgctccatatgtcttg 468 |||||||||||||||||||| Sbjct: 76747 gtgctgctccatatgtcttg 76766
>dbj|AK054505.1| Mus musculus 2 days pregnant adult female ovary cDNA, RIKEN full-length enriched library, clone:E330033N02 product:unclassifiable, full insert sequence Length = 3452 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 16 gagaaagaaacctatacatatctt 39 |||||||| ||||||||||||||| Sbjct: 2523 gagaaagatacctatacatatctt 2546
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 atcttaattagctaaccaaa 54 |||||||||||||||||||| Sbjct: 6468224 atcttaattagctaaccaaa 6468205
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 461 atgtcttggggttggggggt 480 |||||||||||||||||||| Sbjct: 20739970 atgtcttggggttggggggt 20739951
>dbj|AP003963.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1779_B07 Length = 151427 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 atcttaattagctaaccaaa 54 |||||||||||||||||||| Sbjct: 124791 atcttaattagctaaccaaa 124772
>dbj|AP003805.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1080_F08 Length = 94139 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 atcttaattagctaaccaaa 54 |||||||||||||||||||| Sbjct: 25313 atcttaattagctaaccaaa 25294
>gb|AY108867.1| Zea mays PCO098137 mRNA sequence Length = 719 Score = 40.1 bits (20), Expect = 7.7 Identities = 55/64 (85%), Gaps = 2/64 (3%) Strand = Plus / Minus Query: 372 ggctgtgaccttgtt-agccacggtgggcgtcatcgccaa-ctgcatcggagccgccacg 429 |||| |||||||||| |||||||| || ||||||||||| |||||| ||||||| ||| Sbjct: 645 ggctatgaccttgtttagccacggctggtgtcatcgccaatctgcataggagccgtcact 586 Query: 430 gtcg 433 |||| Sbjct: 585 gtcg 582
>dbj|AP002469.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-266E8, complete sequence Length = 158977 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 237 ggagatcttgacatgtcttgacag 260 |||| ||||||||||||||||||| Sbjct: 113482 ggaggtcttgacatgtcttgacag 113505
>dbj|AP002762.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-811I7, complete sequence Length = 189993 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 237 ggagatcttgacatgtcttgacag 260 |||| ||||||||||||||||||| Sbjct: 10317 ggaggtcttgacatgtcttgacag 10340
>emb|AL928713.16| Mouse DNA sequence from clone RP23-399M5 on chromosome 2, complete sequence Length = 212028 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 agcttcctttgctgagtatg 106 |||||||||||||||||||| Sbjct: 11126 agcttcctttgctgagtatg 11107 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,037,710 Number of Sequences: 3902068 Number of extensions: 4037710 Number of successful extensions: 76772 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 76710 Number of HSP's gapped (non-prelim): 64 length of query: 568 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 545 effective length of database: 17,143,297,704 effective search space: 9343097248680 effective search space used: 9343097248680 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)