>UBP47_MOUSE (Q8BY87) Ubiquitin carboxyl-terminal hydrolase 47 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 47)
           (Ubiquitin-specific-processing protease 47)
           (Deubiquitinating enzyme 47)
          Length = 1376

 Score = 35.0 bits (79), Expect = 0.21
 Identities = 17/41 (41%), Positives = 26/41 (63%)
 Frame = +1

Query: 490 HSHNATTINSNHLPGSKNFLHY*PTADKEGHPLTPKLLFED 612
           H+ + + +++N  PG KNFLH     DK+G P  P++L ED
Sbjct: 106 HTSDKSLLDANFEPGKKNFLH---LTDKDGEP--PQMLLED 141

>UBP47_HUMAN (Q96K76) Ubiquitin carboxyl-terminal hydrolase 47 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 47)
           (Ubiquitin-specific-processing protease 47)
           (Deubiquitinating enzyme 47)
          Length = 1375

 Score = 33.1 bits (74), Expect = 0.80
 Identities = 17/43 (39%), Positives = 26/43 (60%)
 Frame = +1

Query: 490 HSHNATTINSNHLPGSKNFLHY*PTADKEGHPLTPKLLFEDHS 618
           H+ + + +++N  PG KNFLH     DK+G    P++L ED S
Sbjct: 106 HTSDKSLLDANFEPGKKNFLH---LTDKDGE--QPQILLEDSS 143

>MIAA_PROMM (Q7TV75) tRNA delta(2)-isopentenylpyrophosphate transferase (EC|
           2.5.1.8) (IPP transferase) (Isopentenyl-diphosphate:tRNA
           isopentenyltransferase) (IPTase) (IPPT)
          Length = 299

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = -2

Query: 639 QTLKLVQRMILKQKLRGQGMAFLVGGGSVMQKIL 538
           Q  +   ++IL QKLR Q M FLVGG  +  K L
Sbjct: 78  QEFQAAAQLILAQKLREQNMPFLVGGSGLYLKAL 111

>ARID2_HUMAN (Q68CP9) AT-rich interactive domain-containing protein 2 (ARID|
            domain-containing protein 2) (BRG1-associated factor 200)
            (BAF200)
          Length = 1835

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 2/114 (1%)
 Frame = -2

Query: 648  AATQTLKLVQRMILKQKLRGQGMAFLVGGGSVMQK--ILAPREVITVDCGCIVAMTSTIS 475
            A T T+   Q++I       Q  +     GS  Q   I+AP + +T     IV+ TS  +
Sbjct: 810  ACTSTVSQGQQLITTSPQPVQTSSQQTSAGSQSQDTVIIAPPQYVTTSASNIVSATSVQN 869

Query: 474  FQLQNPTQHRRAVLVFGGVNQLKASLTGPGVVFIQSLPFSRLSQRIASRSVAAP 313
            FQ+         ++   GV   +AS  G   +  + LP  ++S  +  + +  P
Sbjct: 870  FQVAT-----GQMVTIAGVPSPQASRVGFQNIAPKPLPSQQVSSTVVQQPIQQP 918

>UPAR_MOUSE (P35456) Urokinase plasminogen activator surface receptor,|
           GPI-anchored form precursor (uPAR) (U-PAR) (CD87
           antigen)
          Length = 327

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 32/126 (25%), Positives = 46/126 (36%), Gaps = 3/126 (2%)
 Frame = -1

Query: 556 SNAENSCSPGGDYC*LWLHCGYDKHHQLSVTEPYPT*KS---SPCIRGCQPAKSISHRTW 386
           ++ + SC  G +     L C Y   H + V     T +S       RGC           
Sbjct: 123 TSLDQSCERGREQS---LQCRYPTEHCIEVVTLQSTERSLKDEDYTRGCGSLPGCPGTAG 179

Query: 385 RRFHSEPTLQSALAAHRK*ISGGPKLERQPQVLHPDHHVLLPGLCHDCVVNNSDGCLGDA 206
             FHS  T       +    +GGP L+ Q     P +       C+ C  NN+ GC  + 
Sbjct: 180 --FHSNQTFHFLKCCNYTHCNGGPVLDLQS---FPPNGFQ----CYSCEGNNTLGCSSEE 230

Query: 205 ATSILC 188
           A+ I C
Sbjct: 231 ASLINC 236

>LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor|
          Length = 3695

 Score = 29.6 bits (65), Expect = 8.9
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = -1

Query: 319  GPKLERQPQVLHPDHHVLLPGLCHDCVVNNSDGCLGDAATSILCNPVRMF 170
            GP  E QPQ   P   +LL GL     + N  GC+ +     L  P R+F
Sbjct: 3229 GPPPELQPQPEGPPR-LLLGGLPESGTIYNFSGCISNVFVQRLLGPQRVF 3277


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,565,420
Number of Sequences: 219361
Number of extensions: 2164473
Number of successful extensions: 5158
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5154
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6712189044
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)