ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5n03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY104540.1| Zea mays PCO106157 mRNA sequence 252 1e-63
2ref|XM_469732.1| Oryza sativa (japonica cultivar-group), mRNA 234 3e-58
3dbj|AK071214.1| Oryza sativa (japonica cultivar-group) cDNA clon... 234 3e-58
4dbj|AK060347.1| Oryza sativa (japonica cultivar-group) cDNA clon... 234 3e-58
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 127 5e-26
6gb|AC087852.11| Oryza sativa chromosome 3 BAC OJ1124_H03 genomic... 127 5e-26
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 127 5e-26
8ref|NM_169228.1| Drosophila melanogaster CG31258-RA (CG31258), mRNA 46 0.15
9gb|AC007571.6| Drosophila melanogaster, chromosome 3R, region 85... 46 0.15
10gb|AC012646.6|AC012646 Drosophila melanogaster, chromosome 3R, r... 46 0.15
11gb|BT003581.1| Drosophila melanogaster LD17329 full insert cDNA 46 0.15
12gb|AE003679.2| Drosophila melanogaster chromosome 3R, section 17... 46 0.15
13gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome 44 0.60
14emb|AL356102.13| Human DNA sequence from clone RP11-490P13 on ch... 44 0.60
15gb|AY310444.1| Raspberry ringspot virus grapevine strain RNA 1 c... 42 2.4
16gb|AC090987.5| Homo sapiens chromosome 8, clone RP11-269I24, com... 42 2.4
17dbj|AP006677.1| Lotus japonicus genomic DNA, chromosome 1, clone... 42 2.4
18gb|AC152353.1| Pan troglodytes chromosome X clone RP43-001P01 ma... 40 9.3
19ref|XM_480849.1| Oryza sativa (japonica cultivar-group), mRNA 40 9.3
20gb|AC004004.1| Homo sapiens DNA from chromosome 19, cosmid R3253... 40 9.3
21ref|XM_707522.1| Candida albicans SC5314 hypothetical protein (C... 40 9.3
22ref|XM_707672.1| Candida albicans SC5314 hypothetical protein (C... 40 9.3
23gb|AC131039.7| Mus musculus chromosome 1, clone RP23-274I23, com... 40 9.3
24gb|AC132221.3| Mus musculus BAC clone RP24-545C12 from chromosom... 40 9.3
25gb|AC115751.6| Mus musculus chromosome 1, clone RP23-16I21, comp... 40 9.3
26gb|AC156645.2| Mus musculus BAC clone RP23-59I22 from chromosome... 40 9.3
27emb|BX942816.7| Zebrafish DNA sequence from clone DKEY-50I15 in ... 40 9.3
28gb|AC154210.2| Mus musculus BAC clone RP24-113C3 from chromosome... 40 9.3
29emb|CR384085.5| Zebrafish DNA sequence from clone CH211-267K7 in... 40 9.3
30emb|BX572632.7| Zebrafish DNA sequence from clone CH211-162I20 i... 40 9.3
31gb|AC157594.4| Mus musculus BAC clone RP23-279A2 from chromosome... 40 9.3
32dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
33dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
34gb|AF532115.1| Mus musculus strain 129/SvJ BAC clone citb553n23 ... 40 9.3
35gb|AF532112.1| Mus musculus strain 129/SvJ BAC clone citb20h22 f... 40 9.3
36gb|AC007395.3|AC007395 Homo sapiens BAC clone RP11-504O1 from 2,... 40 9.3
37dbj|AP005514.2| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
38emb|AL929064.11| Mouse DNA sequence from clone RP23-442A7 on chr... 40 9.3
39gb|CP000029.1| Staphylococcus epidermidis RP62A, complete genome 40 9.3
40dbj|AP005603.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
41dbj|AP004648.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
42emb|CT010428.13| Mouse DNA sequence from clone RP23-304G18 on ch... 40 9.3
43gb|AC005960.1|AC005960 Mus musculus chromosome 17 BAC citb20h22 ... 40 9.3
44gb|AE015929.1| Staphylococcus epidermidis ATCC 12228, complete g... 40 9.3
45emb|AL953859.7| Zebrafish DNA sequence from clone DKEY-53P21, co... 40 9.3
46gb|AC124409.5| Mus musculus BAC clone RP24-262P14 from 8, comple... 40 9.3
47gb|AC151411.2| Mus musculus BAC clone RP24-363M23 from 17, compl... 40 9.3
48emb|CR974570.12| Pig DNA sequence from clone CH242-206F5 on chro... 40 9.3
49gb|AC121770.3| Mus musculus BAC clone RP23-341M16 from 17, compl... 40 9.3
50emb|CR956641.9| Mouse DNA sequence from clone RP23-77N9 on chrom... 40 9.3
51gb|AC153803.1| Mus musculus 6 BAC RP24-276E19 (Roswell Park Canc... 40 9.3
52emb|AL805973.6| Mouse DNA sequence from clone RP23-69G24 on chro... 40 9.3 
>gb|AY104540.1| Zea mays PCO106157 mRNA sequence
          Length = 1359

 Score =  252 bits (127), Expect = 1e-63
 Identities = 386/470 (82%), Gaps = 8/470 (1%)
 Strand = Plus / Minus

                                                                       
Query: 213 cctaaacatccgtcagaattattgacgacacaatcatgacataggccaggaagaagaaca 272
           |||||||||| ||||||||||| || || |||||||| ||||||||||||||||||||||
Sbjct: 981 cctaaacatctgtcagaattatggatgatacaatcataacataggccaggaagaagaaca 922

                                                                       
Query: 273 tgatgatctggatgaagaacctggggttgtctctcaagcttggggccgccactgatctac 332
           |||  ||||||||||||||| | |||||||| |||||||||||| | |||||||||||||
Sbjct: 921 tgacaatctggatgaagaactttgggttgtccctcaagcttgggcctgccactgatctac 862

                                                                       
Query: 333 ttgcgatgcgctgcgagagccgactgaagggtaggctctgaatgaaaacgacgccaggtc 392
           | ||||| | ||| ||||| |||  ||| || || || ||||||||||| || || ||||
Sbjct: 861 tggcgattctctgtgagagtcgatggaatggcagactttgaatgaaaacaacacctggtc 802

                                                                       
Query: 393 ctgtgagagatgcttttagctggttgacacccccgaatacaaggactgctcttctatgtt 452
           | |||||||||||| ||||||||||  ||||||| || ||      |||||||||| | |
Sbjct: 801 ccgtgagagatgctgttagctggttatcacccccaaaaac------tgctcttctaagct 748

                                                                       
Query: 453 gggtagggttctgtaactgaaagctgatggtgcttgtcatagccacaatgcaaccacaat 512
           || ||||| |||  ||||| ||| | ||||||   | |||||||||||| ||| ||  ||
Sbjct: 747 ggttagggctcttcaactggaagttaatggtggccgacatagccacaatacaagcagcat 688

                                                                       
Query: 513 caacagtaatcacctcccggggagcaagaattttctgcattactgacccaccgccgacaa 572
           ||||||| |||||||| |  |||||||| ||||||||||| ||||| ||||| || ||||
Sbjct: 687 caacagttatcacctctctaggagcaaggattttctgcatgactgatccaccaccaacaa 628

                                                                       
Query: 573 ggaaggccatcccttgacccctaagcttctgtttgaggatcattctctgcaccaatttca 632
           | || |||||||| || |||||||| || ||||| |||||||| |||||||||||| |||
Sbjct: 627 gaaaagccatcccctggcccctaagtttttgtttaaggatcat-ctctgcaccaatctca 569

                                                             
Query: 633 atgtttgcgtggccgctgatcaactgtacttgtgactgacacatcattga 682
           || ||  |||||||   | ||||||||||| | ||| || ||||||||||
Sbjct: 568 atattc-cgtggccttggctcaactgtactagagacggagacatcattga 520
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>ref|XM_469732.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1350

 Score =  234 bits (118), Expect = 3e-58
 Identities = 192/214 (89%), Gaps = 2/214 (0%)
 Strand = Plus / Minus

                                                                       
Query: 467 aactgaaagctgatggtgcttgtcatagccacaatgcaaccacaatcaacagtaatcacc 526
           ||||||||| |||||||| |||||||||||||||| ||| ||   ||||| |||||||||
Sbjct: 713 aactgaaagttgatggtggttgtcatagccacaatacaagcagcgtcaactgtaatcacc 654

                                                                       
Query: 527 tcccggggagcaagaattttctgcattactgacccaccgccgacaaggaaggccatccct 586
           || || || ||||||||||||||||| ||||| ||||| || |||||||| |||||||||
Sbjct: 653 tcacgaggggcaagaattttctgcatgactgatccaccaccaacaaggaaagccatccct 594

                                                                       
Query: 587 tgacccctaagcttctgtttgaggatcattctctgcaccaatttcaatgtttgcgtggcc 646
           ||||||||||||||||||||||||||||  |||||||||||||||||||||| || ||||
Sbjct: 593 tgacccctaagcttctgtttgaggatca-cctctgcaccaatttcaatgttt-cgcggcc 536

                                             
Query: 647 gctgatcaactgtacttgtgactgacacatcatt 680
            ||| |||||||||||||||||||||||||||||
Sbjct: 535 tctgctcaactgtacttgtgactgacacatcatt 502



 Score =  190 bits (96), Expect = 4e-45
 Identities = 177/204 (86%)
 Strand = Plus / Minus

                                                                       
Query: 214 ctaaacatccgtcagaattattgacgacacaatcatgacataggccaggaagaagaacat 273
           ||||||||| ||||||||||| || || |||||||||||||| || ||||||||||||||
Sbjct: 960 ctaaacatctgtcagaattatcgatgatacaatcatgacatacgcgaggaagaagaacat 901

                                                                       
Query: 274 gatgatctggatgaagaacctggggttgtctctcaagcttggggccgccactgatctact 333
           ||  ||||||||||||||| |||| ||||| |||||||| || || ||||||||||||||
Sbjct: 900 gacaatctggatgaagaacttgggattgtccctcaagctcggagcggccactgatctact 841

                                                                       
Query: 334 tgcgatgcgctgcgagagccgactgaagggtaggctctgaatgaaaacgacgccaggtcc 393
           ||| ||||| || || ||||||   |||||||||||||| ||||| || ||||| |||||
Sbjct: 840 tgcaatgcgttgtgaaagccgatgaaagggtaggctctgtatgaagaccacgcctggtcc 781

                                   
Query: 394 tgtgagagatgcttttagctggtt 417
           ||||||||||||| | ||||||||
Sbjct: 780 tgtgagagatgctgtaagctggtt 757
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>dbj|AK071214.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023082F22, full
           insert sequence
          Length = 1417

 Score =  234 bits (118), Expect = 3e-58
 Identities = 192/214 (89%), Gaps = 2/214 (0%)
 Strand = Plus / Minus

                                                                       
Query: 467 aactgaaagctgatggtgcttgtcatagccacaatgcaaccacaatcaacagtaatcacc 526
           ||||||||| |||||||| |||||||||||||||| ||| ||   ||||| |||||||||
Sbjct: 721 aactgaaagttgatggtggttgtcatagccacaatacaagcagcgtcaactgtaatcacc 662

                                                                       
Query: 527 tcccggggagcaagaattttctgcattactgacccaccgccgacaaggaaggccatccct 586
           || || || ||||||||||||||||| ||||| ||||| || |||||||| |||||||||
Sbjct: 661 tcacgaggggcaagaattttctgcatgactgatccaccaccaacaaggaaagccatccct 602

                                                                       
Query: 587 tgacccctaagcttctgtttgaggatcattctctgcaccaatttcaatgtttgcgtggcc 646
           ||||||||||||||||||||||||||||  |||||||||||||||||||||| || ||||
Sbjct: 601 tgacccctaagcttctgtttgaggatca-cctctgcaccaatttcaatgttt-cgcggcc 544

                                             
Query: 647 gctgatcaactgtacttgtgactgacacatcatt 680
            ||| |||||||||||||||||||||||||||||
Sbjct: 543 tctgctcaactgtacttgtgactgacacatcatt 510



 Score =  190 bits (96), Expect = 4e-45
 Identities = 177/204 (86%)
 Strand = Plus / Minus

                                                                       
Query: 214 ctaaacatccgtcagaattattgacgacacaatcatgacataggccaggaagaagaacat 273
           ||||||||| ||||||||||| || || |||||||||||||| || ||||||||||||||
Sbjct: 968 ctaaacatctgtcagaattatcgatgatacaatcatgacatacgcgaggaagaagaacat 909

                                                                       
Query: 274 gatgatctggatgaagaacctggggttgtctctcaagcttggggccgccactgatctact 333
           ||  ||||||||||||||| |||| ||||| |||||||| || || ||||||||||||||
Sbjct: 908 gacaatctggatgaagaacttgggattgtccctcaagctcggagcggccactgatctact 849

                                                                       
Query: 334 tgcgatgcgctgcgagagccgactgaagggtaggctctgaatgaaaacgacgccaggtcc 393
           ||| ||||| || || ||||||   |||||||||||||| ||||| || ||||| |||||
Sbjct: 848 tgcaatgcgttgtgaaagccgatgaaagggtaggctctgtatgaagaccacgcctggtcc 789

                                   
Query: 394 tgtgagagatgcttttagctggtt 417
           ||||||||||||| | ||||||||
Sbjct: 788 tgtgagagatgctgtaagctggtt 765
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>dbj|AK060347.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-E10, full
           insert sequence
          Length = 1240

 Score =  234 bits (118), Expect = 3e-58
 Identities = 192/214 (89%), Gaps = 2/214 (0%)
 Strand = Plus / Minus

                                                                       
Query: 467 aactgaaagctgatggtgcttgtcatagccacaatgcaaccacaatcaacagtaatcacc 526
           ||||||||| |||||||| |||||||||||||||| ||| ||   ||||| |||||||||
Sbjct: 721 aactgaaagttgatggtggttgtcatagccacaatacaagcagcgtcaactgtaatcacc 662

                                                                       
Query: 527 tcccggggagcaagaattttctgcattactgacccaccgccgacaaggaaggccatccct 586
           || || || ||||||||||||||||| ||||| ||||| || |||||||| |||||||||
Sbjct: 661 tcacgaggggcaagaattttctgcatgactgatccaccaccaacaaggaaagccatccct 602

                                                                       
Query: 587 tgacccctaagcttctgtttgaggatcattctctgcaccaatttcaatgtttgcgtggcc 646
           ||||||||||||||||||||||||||||  |||||||||||||||||||||| || ||||
Sbjct: 601 tgacccctaagcttctgtttgaggatca-cctctgcaccaatttcaatgttt-cgcggcc 544

                                             
Query: 647 gctgatcaactgtacttgtgactgacacatcatt 680
            ||| |||||||||||||||||||||||||||||
Sbjct: 543 tctgctcaactgtacttgtgactgacacatcatt 510



 Score =  190 bits (96), Expect = 4e-45
 Identities = 177/204 (86%)
 Strand = Plus / Minus

                                                                       
Query: 214 ctaaacatccgtcagaattattgacgacacaatcatgacataggccaggaagaagaacat 273
           ||||||||| ||||||||||| || || |||||||||||||| || ||||||||||||||
Sbjct: 968 ctaaacatctgtcagaattatcgatgatacaatcatgacatacgcgaggaagaagaacat 909

                                                                       
Query: 274 gatgatctggatgaagaacctggggttgtctctcaagcttggggccgccactgatctact 333
           ||  ||||||||||||||| |||| ||||| |||||||| || || ||||||||||||||
Sbjct: 908 gacaatctggatgaagaacttgggattgtccctcaagctcggagcggccactgatctact 849

                                                                       
Query: 334 tgcgatgcgctgcgagagccgactgaagggtaggctctgaatgaaaacgacgccaggtcc 393
           ||| ||||| || || ||||||   |||||||||||||| ||||| || ||||| |||||
Sbjct: 848 tgcaatgcgttgtgaaagccgatgaaagggtaggctctgtatgaagaccacgcctggtcc 789

                                   
Query: 394 tgtgagagatgcttttagctggtt 417
           ||||||||||||| | ||||||||
Sbjct: 788 tgtgagagatgctgtaagctggtt 765
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  127 bits (64), Expect = 5e-26
 Identities = 106/120 (88%)
 Strand = Plus / Minus

                                                                            
Query: 214      ctaaacatccgtcagaattattgacgacacaatcatgacataggccaggaagaagaacat 273
                ||||||||| ||||||||||| || || |||||||||||||| || ||||||||||||||
Sbjct: 30447347 ctaaacatctgtcagaattatcgatgatacaatcatgacatacgcgaggaagaagaacat 30447288

                                                                            
Query: 274      gatgatctggatgaagaacctggggttgtctctcaagcttggggccgccactgatctact 333
                ||  ||||||||||||||| |||| ||||| |||||||| || || ||||||||||||||
Sbjct: 30447287 gacaatctggatgaagaacttgggattgtccctcaagctcggagcggccactgatctact 30447228



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 56/60 (93%)
 Strand = Plus / Minus

                                                                            
Query: 555      ctgacccaccgccgacaaggaaggccatcccttgacccctaagcttctgtttgaggatca 614
                |||| ||||| || |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 30446370 ctgatccaccaccaacaaggaaagccatcccttgacccctaagcttctgtttgaggatca 30446311



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 60/64 (93%), Gaps = 1/64 (1%)
 Strand = Plus / Minus

                                                                            
Query: 617      ctctgcaccaatttcaatgtttgcgtggccgctgatcaactgtacttgtgactgacacat 676
                |||||||||||||||||||||| || |||| ||| |||||||||||||||||||||||||
Sbjct: 30446189 ctctgcaccaatttcaatgttt-cgcggcctctgctcaactgtacttgtgactgacacat 30446131

                    
Query: 677      catt 680
                ||||
Sbjct: 30446130 catt 30446127



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 75/86 (87%)
 Strand = Plus / Minus

                                                                            
Query: 467      aactgaaagctgatggtgcttgtcatagccacaatgcaaccacaatcaacagtaatcacc 526
                ||||||||| |||||||| |||||||||||||||| ||| ||   ||||| |||||||||
Sbjct: 30446918 aactgaaagttgatggtggttgtcatagccacaatacaagcagcgtcaactgtaatcacc 30446859

                                          
Query: 527      tcccggggagcaagaattttctgcat 552
                || || || |||||||||||||||||
Sbjct: 30446858 tcacgaggggcaagaattttctgcat 30446833



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                           
Query: 359      aagggtaggctctgaatgaaaacgacgccaggtcctgtgagagatgcttttagctggtt 417
                |||||||||||||| ||||| || ||||| |||||||||||||||||| | ||||||||
Sbjct: 30447113 aagggtaggctctgtatgaagaccacgcctggtcctgtgagagatgctgtaagctggtt 30447055
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>gb|AC087852.11| Oryza sativa chromosome 3 BAC OJ1124_H03 genomic sequence, complete
             sequence
          Length = 149380

 Score =  127 bits (64), Expect = 5e-26
 Identities = 106/120 (88%)
 Strand = Plus / Plus

                                                                         
Query: 214   ctaaacatccgtcagaattattgacgacacaatcatgacataggccaggaagaagaacat 273
             ||||||||| ||||||||||| || || |||||||||||||| || ||||||||||||||
Sbjct: 29668 ctaaacatctgtcagaattatcgatgatacaatcatgacatacgcgaggaagaagaacat 29727

                                                                         
Query: 274   gatgatctggatgaagaacctggggttgtctctcaagcttggggccgccactgatctact 333
             ||  ||||||||||||||| |||| ||||| |||||||| || || ||||||||||||||
Sbjct: 29728 gacaatctggatgaagaacttgggattgtccctcaagctcggagcggccactgatctact 29787



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 60/64 (93%), Gaps = 1/64 (1%)
 Strand = Plus / Plus

                                                                         
Query: 617   ctctgcaccaatttcaatgtttgcgtggccgctgatcaactgtacttgtgactgacacat 676
             |||||||||||||||||||||| || |||| ||| |||||||||||||||||||||||||
Sbjct: 30826 ctctgcaccaatttcaatgttt-cgcggcctctgctcaactgtacttgtgactgacacat 30884

                 
Query: 677   catt 680
             ||||
Sbjct: 30885 catt 30888



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 56/60 (93%)
 Strand = Plus / Plus

                                                                         
Query: 555   ctgacccaccgccgacaaggaaggccatcccttgacccctaagcttctgtttgaggatca 614
             |||| ||||| || |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 30645 ctgatccaccaccaacaaggaaagccatcccttgacccctaagcttctgtttgaggatca 30704



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 75/86 (87%)
 Strand = Plus / Plus

                                                                         
Query: 467   aactgaaagctgatggtgcttgtcatagccacaatgcaaccacaatcaacagtaatcacc 526
             ||||||||| |||||||| |||||||||||||||| ||| ||   ||||| |||||||||
Sbjct: 30097 aactgaaagttgatggtggttgtcatagccacaatacaagcagcgtcaactgtaatcacc 30156

                                       
Query: 527   tcccggggagcaagaattttctgcat 552
             || || || |||||||||||||||||
Sbjct: 30157 tcacgaggggcaagaattttctgcat 30182



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 53/59 (89%)
 Strand = Plus / Plus

                                                                        
Query: 359   aagggtaggctctgaatgaaaacgacgccaggtcctgtgagagatgcttttagctggtt 417
             |||||||||||||| ||||| || ||||| |||||||||||||||||| | ||||||||
Sbjct: 29902 aagggtaggctctgtatgaagaccacgcctggtcctgtgagagatgctgtaagctggtt 29960
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  127 bits (64), Expect = 5e-26
 Identities = 106/120 (88%)
 Strand = Plus / Minus

                                                                            
Query: 214      ctaaacatccgtcagaattattgacgacacaatcatgacataggccaggaagaagaacat 273
                ||||||||| ||||||||||| || || |||||||||||||| || ||||||||||||||
Sbjct: 30538769 ctaaacatctgtcagaattatcgatgatacaatcatgacatacgcgaggaagaagaacat 30538710

                                                                            
Query: 274      gatgatctggatgaagaacctggggttgtctctcaagcttggggccgccactgatctact 333
                ||  ||||||||||||||| |||| ||||| |||||||| || || ||||||||||||||
Sbjct: 30538709 gacaatctggatgaagaacttgggattgtccctcaagctcggagcggccactgatctact 30538650



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 56/60 (93%)
 Strand = Plus / Minus

                                                                            
Query: 555      ctgacccaccgccgacaaggaaggccatcccttgacccctaagcttctgtttgaggatca 614
                |||| ||||| || |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 30537792 ctgatccaccaccaacaaggaaagccatcccttgacccctaagcttctgtttgaggatca 30537733



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 60/64 (93%), Gaps = 1/64 (1%)
 Strand = Plus / Minus

                                                                            
Query: 617      ctctgcaccaatttcaatgtttgcgtggccgctgatcaactgtacttgtgactgacacat 676
                |||||||||||||||||||||| || |||| ||| |||||||||||||||||||||||||
Sbjct: 30537611 ctctgcaccaatttcaatgttt-cgcggcctctgctcaactgtacttgtgactgacacat 30537553

                    
Query: 677      catt 680
                ||||
Sbjct: 30537552 catt 30537549



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 75/86 (87%)
 Strand = Plus / Minus

                                                                            
Query: 467      aactgaaagctgatggtgcttgtcatagccacaatgcaaccacaatcaacagtaatcacc 526
                ||||||||| |||||||| |||||||||||||||| ||| ||   ||||| |||||||||
Sbjct: 30538340 aactgaaagttgatggtggttgtcatagccacaatacaagcagcgtcaactgtaatcacc 30538281

                                          
Query: 527      tcccggggagcaagaattttctgcat 552
                || || || |||||||||||||||||
Sbjct: 30538280 tcacgaggggcaagaattttctgcat 30538255



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                           
Query: 359      aagggtaggctctgaatgaaaacgacgccaggtcctgtgagagatgcttttagctggtt 417
                |||||||||||||| ||||| || ||||| |||||||||||||||||| | ||||||||
Sbjct: 30538535 aagggtaggctctgtatgaagaccacgcctggtcctgtgagagatgctgtaagctggtt 30538477
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>ref|NM_169228.1| Drosophila melanogaster CG31258-RA (CG31258), mRNA
          Length = 4329

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 256  ggccaggaagaagaacatgatga 278
            |||||||||||||||||||||||
Sbjct: 2353 ggccaggaagaagaacatgatga 2375
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>gb|AC007571.6| Drosophila melanogaster, chromosome 3R, region 85A1-85A10, BAC clone
              BACR48A14, complete sequence
          Length = 188337

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 256    ggccaggaagaagaacatgatga 278
              |||||||||||||||||||||||
Sbjct: 104685 ggccaggaagaagaacatgatga 104663
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>gb|AC012646.6|AC012646 Drosophila melanogaster, chromosome 3R, region 85A-85B, BAC clone
             BACR03F16, complete sequence
          Length = 204681

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 256   ggccaggaagaagaacatgatga 278
             |||||||||||||||||||||||
Sbjct: 20902 ggccaggaagaagaacatgatga 20880
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>gb|BT003581.1| Drosophila melanogaster LD17329 full insert cDNA
          Length = 2968

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 256  ggccaggaagaagaacatgatga 278
            |||||||||||||||||||||||
Sbjct: 2389 ggccaggaagaagaacatgatga 2411
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>gb|AE003679.2| Drosophila melanogaster chromosome 3R, section 17 of 118 of the complete
              sequence
          Length = 216994

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 256    ggccaggaagaagaacatgatga 278
              |||||||||||||||||||||||
Sbjct: 122845 ggccaggaagaagaacatgatga 122867
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>gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome
          Length = 2572079

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 414    ggttgacacccccgaatacaag 435
              ||||||||||||||||||||||
Sbjct: 449046 ggttgacacccccgaatacaag 449025
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>emb|AL356102.13| Human DNA sequence from clone RP11-490P13 on chromosome 13, complete
              sequence
          Length = 139035

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 16     ccttacaaaagaaaactgacaa 37
              ||||||||||||||||||||||
Sbjct: 130702 ccttacaaaagaaaactgacaa 130681
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>gb|AY310444.1| Raspberry ringspot virus grapevine strain RNA 1 complete sequence
          Length = 7935

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 22  aaaagaaaactgacaaacttt 42
           |||||||||||||||||||||
Sbjct: 123 aaaagaaaactgacaaacttt 103
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>gb|AC090987.5| Homo sapiens chromosome 8, clone RP11-269I24, complete sequence
          Length = 153805

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 403   tgcttttagctggttgacacc 423
             |||||||||||||||||||||
Sbjct: 69404 tgcttttagctggttgacacc 69424
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>dbj|AP006677.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT46E19, TM0371b,
             complete sequence
          Length = 67552

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 600   tctgtttgaggatcattctct 620
             |||||||||||||||||||||
Sbjct: 40025 tctgtttgaggatcattctct 40045
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>gb|AC152353.1| Pan troglodytes chromosome X clone RP43-001P01 map human ortholog
            p22.31, complete sequence
          Length = 218326

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 139  tgtaacaactttgactcttc 158
            ||||||||||||||||||||
Sbjct: 6944 tgtaacaactttgactcttc 6925
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>ref|XM_480849.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 828

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 260 aggaagaagaacatgatgatctggatgaagaa 291
           ||||||||||| ||||||||  ||||||||||
Sbjct: 326 aggaagaagaagatgatgatgaggatgaagaa 357
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>gb|AC004004.1| Homo sapiens DNA from chromosome 19, cosmid R32532, complete sequence
          Length = 43768

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 490   catagccacaatgcaaccac 509
             ||||||||||||||||||||
Sbjct: 34225 catagccacaatgcaaccac 34206
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>ref|XM_707522.1| Candida albicans SC5314 hypothetical protein (CaO19.4161), mRNA
          Length = 1116

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 272 atgatgatctggatgaagaa 291
           ||||||||||||||||||||
Sbjct: 419 atgatgatctggatgaagaa 438
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>ref|XM_707672.1| Candida albicans SC5314 hypothetical protein (CaO19.11637), mRNA
          Length = 1116

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 272 atgatgatctggatgaagaa 291
           ||||||||||||||||||||
Sbjct: 419 atgatgatctggatgaagaa 438
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>gb|AC131039.7| Mus musculus chromosome 1, clone RP23-274I23, complete sequence
          Length = 187304

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 265  gaagaacatgatgatctggatgaagaac 292
            |||||| ||| |||||||||||||||||
Sbjct: 6502 gaagaagatgctgatctggatgaagaac 6475
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>gb|AC132221.3| Mus musculus BAC clone RP24-545C12 from chromosome 12, complete sequence
          Length = 198084

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 393    ctgtgagagatgcttttagc 412
              ||||||||||||||||||||
Sbjct: 194024 ctgtgagagatgcttttagc 194043
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>gb|AC115751.6| Mus musculus chromosome 1, clone RP23-16I21, complete sequence
          Length = 256998

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 265   gaagaacatgatgatctggatgaagaac 292
             |||||| ||| |||||||||||||||||
Sbjct: 81750 gaagaagatgctgatctggatgaagaac 81777
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>gb|AC156645.2| Mus musculus BAC clone RP23-59I22 from chromosome 12, complete sequence
          Length = 247201

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 393   ctgtgagagatgcttttagc 412
             ||||||||||||||||||||
Sbjct: 73869 ctgtgagagatgcttttagc 73888
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>emb|BX942816.7| Zebrafish DNA sequence from clone DKEY-50I15 in linkage group 5,
            complete sequence
          Length = 82471

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 611  atcattctctgcaccaattt 630
            ||||||||||||||||||||
Sbjct: 2407 atcattctctgcaccaattt 2388
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>gb|AC154210.2| Mus musculus BAC clone RP24-113C3 from chromosome 13, complete sequence
          Length = 193176

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 17    cttacaaaagaaaactgacaaact 40
             |||||||||||||||||| |||||
Sbjct: 21741 cttacaaaagaaaactgagaaact 21718
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>emb|CR384085.5| Zebrafish DNA sequence from clone CH211-267K7 in linkage group 5,
              complete sequence
          Length = 140947

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 466    taactgaaagctgatggtgcttgt 489
              ||||||||||||| ||||||||||
Sbjct: 128263 taactgaaagctgttggtgcttgt 128240
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>emb|BX572632.7| Zebrafish DNA sequence from clone CH211-162I20 in linkage group 5,
             complete sequence
          Length = 162716

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 466   taactgaaagctgatggtgcttgt 489
             ||||||||||||| ||||||||||
Sbjct: 40861 taactgaaagctgttggtgcttgt 40884
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>gb|AC157594.4| Mus musculus BAC clone RP23-279A2 from chromosome 17, complete sequence
          Length = 220526

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 476    ctgatggtgcttgtcatagc 495
              ||||||||||||||||||||
Sbjct: 153767 ctgatggtgcttgtcatagc 153786
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 260     aggaagaagaacatgatgatctggatgaagaa 291
               ||||||||||| ||||||||  ||||||||||
Sbjct: 8185585 aggaagaagaagatgatgatgaggatgaagaa 8185554
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 46       tatgttttctaacaacagct 65
                ||||||||||||||||||||
Sbjct: 15633336 tatgttttctaacaacagct 15633355
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>gb|AF532115.1| Mus musculus strain 129/SvJ BAC clone citb553n23 from the MHC region,
             complete sequence
          Length = 161729

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 111   acagaggagggatggggggt 130
             ||||||||||||||||||||
Sbjct: 72887 acagaggagggatggggggt 72868
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>gb|AF532112.1| Mus musculus strain 129/SvJ BAC clone citb20h22 from the MHC
           region, complete sequence
          Length = 172199

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 111 acagaggagggatggggggt 130
           ||||||||||||||||||||
Sbjct: 195 acagaggagggatggggggt 176
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>gb|AC007395.3|AC007395 Homo sapiens BAC clone RP11-504O1 from 2, complete sequence
          Length = 158458

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 490   catagccacaatgcaaccac 509
             ||||||||||||||||||||
Sbjct: 89051 catagccacaatgcaaccac 89032
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>dbj|AP005514.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0035A24
          Length = 176446

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 46    tatgttttctaacaacagct 65
             ||||||||||||||||||||
Sbjct: 42023 tatgttttctaacaacagct 42042
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>emb|AL929064.11| Mouse DNA sequence from clone RP23-442A7 on chromosome 2, complete
             sequence
          Length = 121402

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 259   caggaagaagaacatgatga 278
             ||||||||||||||||||||
Sbjct: 61461 caggaagaagaacatgatga 61442
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>gb|CP000029.1| Staphylococcus epidermidis RP62A, complete genome
          Length = 2616530

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 602     tgtttgaggatcattctctgcacc 625
               ||||| ||||||||||||||||||
Sbjct: 2406558 tgtttcaggatcattctctgcacc 2406581
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>dbj|AP005603.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:B1047A05
          Length = 157517

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 260    aggaagaagaacatgatgatctggatgaagaa 291
              ||||||||||| ||||||||  ||||||||||
Sbjct: 153896 aggaagaagaagatgatgatgaggatgaagaa 153865
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>dbj|AP004648.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1449_H02
          Length = 117860

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 260   aggaagaagaacatgatgatctggatgaagaa 291
             ||||||||||| ||||||||  ||||||||||
Sbjct: 18267 aggaagaagaagatgatgatgaggatgaagaa 18236
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>emb|CT010428.13| Mouse DNA sequence from clone RP23-304G18 on chromosome 13, complete
             sequence
          Length = 226457

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 17    cttacaaaagaaaactgacaaact 40
             |||||||||||||||||| |||||
Sbjct: 33326 cttacaaaagaaaactgagaaact 33349
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>gb|AC005960.1|AC005960 Mus musculus chromosome 17 BAC citb20h22 from the MHC region,
           complete sequence
          Length = 158414

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 111 acagaggagggatggggggt 130
           ||||||||||||||||||||
Sbjct: 178 acagaggagggatggggggt 159
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>gb|AE015929.1| Staphylococcus epidermidis ATCC 12228, complete genome
          Length = 2499279

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 602    tgtttgaggatcattctctgcacc 625
              ||||| ||||||||||||||||||
Sbjct: 210643 tgtttcaggatcattctctgcacc 210620
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>emb|AL953859.7| Zebrafish DNA sequence from clone DKEY-53P21, complete sequence
          Length = 203360

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 281   tggatgaagaacctggggttgtctctca 308
             |||||| | |||||||||||||||||||
Sbjct: 92463 tggatgtataacctggggttgtctctca 92436
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>gb|AC124409.5| Mus musculus BAC clone RP24-262P14 from 8, complete sequence
          Length = 178779

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    aaacccttacaaaagaaaac 31
             ||||||||||||||||||||
Sbjct: 72022 aaacccttacaaaagaaaac 72041
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>gb|AC151411.2| Mus musculus BAC clone RP24-363M23 from 17, complete sequence
          Length = 173264

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 476   ctgatggtgcttgtcatagc 495
             ||||||||||||||||||||
Sbjct: 80993 ctgatggtgcttgtcatagc 81012
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>emb|CR974570.12| Pig DNA sequence from clone CH242-206F5 on chromosome 17, complete
             sequence
          Length = 94424

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    ttctaacaacagctgtgcga 71
             ||||||||||||||||||||
Sbjct: 39214 ttctaacaacagctgtgcga 39233
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>gb|AC121770.3| Mus musculus BAC clone RP23-341M16 from 17, complete sequence
          Length = 186190

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 476   ctgatggtgcttgtcatagc 495
             ||||||||||||||||||||
Sbjct: 76507 ctgatggtgcttgtcatagc 76488
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>emb|CR956641.9| Mouse DNA sequence from clone RP23-77N9 on chromosome 17, complete
              sequence
          Length = 202624

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 111    acagaggagggatggggggt 130
              ||||||||||||||||||||
Sbjct: 185434 acagaggagggatggggggt 185453
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>gb|AC153803.1| Mus musculus 6 BAC RP24-276E19 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 155295

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 10     gcaaacccttacaaaagaaa 29
              ||||||||||||||||||||
Sbjct: 126941 gcaaacccttacaaaagaaa 126960
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>emb|AL805973.6| Mouse DNA sequence from clone RP23-69G24 on chromosome 4, complete
             sequence
          Length = 138031

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 20    acaaaagaaaactgacaaactttc 43
             ||||||||||||||| ||||||||
Sbjct: 76574 acaaaagaaaactgagaaactttc 76597


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,827,384
Number of Sequences: 3902068
Number of extensions: 5827384
Number of successful extensions: 101202
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100924
Number of HSP's gapped (non-prelim): 268
length of query: 682
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 659
effective length of database: 17,143,297,704
effective search space: 11297433186936
effective search space used: 11297433186936
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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