ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5n02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CIPK1_ORYSA (Q6X4A2) CIPK-like protein 1 (EC 2.7.11.1) (OsCK1) 55 2e-10
2CPK24_ARATH (Q9LDI3) CBL-interacting serine/threonine-protein ki... 51 6e-09
3CPK15_ARATH (P92937) CBL-interacting serine/threonine-protein ki... 39 2e-08
4CIPK1_ARATH (Q8RWC9) CBL-interacting serine/threonine-protein ki... 39 2e-05
5CPK11_ARATH (O22932) CBL-interacting serine/threonine-protein ki... 37 0.065
6RPOB_DEHSC (Q3ZX01) DNA-directed RNA polymerase beta chain (EC 2... 33 0.72
7RPOB_DEHE1 (Q3Z8V4) DNA-directed RNA polymerase beta chain (EC 2... 33 0.72
8IFRH_SOLTU (P52578) Isoflavone reductase homolog (EC 1.3.1.-) (C... 32 1.2
9GLNA_GIBFU (Q9C2U9) Glutamine synthetase (EC 6.3.1.2) (Glutamate... 31 3.6
10ZN688_HUMAN (Q8WV14) Zinc finger protein 688 30 4.7
11LATA_LATMA (P23631) Alpha-latrotoxin precursor (Alpha-LTX) 30 4.7
12CYSK2_BRAJU (O23735) Cysteine synthase (EC 2.5.1.47) (O-acetylse... 30 8.0
13GLNA_COLGL (Q12613) Glutamine synthetase (EC 6.3.1.2) (Glutamate... 30 8.0
14MYH7_RAT (P02564) Myosin heavy chain, cardiac muscle beta isofor... 30 8.0
15MYH7_PIG (P79293) Myosin heavy chain, cardiac muscle beta isofor... 30 8.0

>CIPK1_ORYSA (Q6X4A2) CIPK-like protein 1 (EC 2.7.11.1) (OsCK1)|
          Length = 449

 Score = 55.1 bits (131), Expect(2) = 2e-10
 Identities = 27/75 (36%), Positives = 47/75 (62%)
 Frame = -1

Query: 538 CPARR*TPIISKLEEIAGQVSFTARTKDCQVSFEATRNGHKGALAISTKIFQLTPELVMV 359
           CP +    II+K+EE A  + F  + K+ ++  E  + G KG L ++T++FQ+ P L +V
Sbjct: 352 CPPKE---IITKIEEAAKPLGFDIQKKNYKMRMENLKAGRKGNLNVATEVFQVAPSLHVV 408

Query: 358 QVCKKAGDTAEYRQF 314
           ++ K  GDT E+++F
Sbjct: 409 ELKKAKGDTLEFQKF 423



 Score = 30.0 bits (66), Expect(2) = 2e-10
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = -3

Query: 626 SMNAFDIIASSPSFDLSGLFEERGE---QLRFVSSAP 525
           SMNAF++I+ + + +L  LFE + E   + RF S  P
Sbjct: 317 SMNAFELISLNQALNLDNLFEAKKEYKRETRFTSQCP 353



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>CPK24_ARATH (Q9LDI3) CBL-interacting serine/threonine-protein kinase 24 (EC|
           2.7.11.1) (SNF1-related kinase 3.11) (SALT OVERLY
           SENSITIVE 2 protein)
          Length = 446

 Score = 50.8 bits (120), Expect(2) = 6e-09
 Identities = 29/100 (29%), Positives = 54/100 (54%), Gaps = 3/100 (3%)
 Frame = -1

Query: 529 RR*TPIISKLEEIAGQVSFTARTKDCQVSFEATRNGHKGALAISTKIFQLTPELVMVQVC 350
           R  + II+ +E +A  + F + T++ +   E   +   G LA+  +I+++ P L MV V 
Sbjct: 345 REPSEIIANIEAVANSMGFKSHTRNFKTRLEGLSSIKAGQLAVVIEIYEVAPSLFMVDVR 404

Query: 349 KKAGDTAEYRQF---CGSELKPGLRGLVDGLPEDGLPPTV 239
           K AG+T EY +F     S+L+  +    +G+P+  +  T+
Sbjct: 405 KAAGETLEYHKFYKKLCSKLENIIWRATEGIPKSEILRTI 444



 Score = 28.9 bits (63), Expect(2) = 6e-09
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
 Frame = -3

Query: 623 MNAFDIIASSPSFDLSGLFEERGE----QLRFVS 534
           MNAF++I  S   +LS LF+ R +    Q RFVS
Sbjct: 310 MNAFEMITLSQGLNLSALFDRRQDFVKRQTRFVS 343



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>CPK15_ARATH (P92937) CBL-interacting serine/threonine-protein kinase 15 (EC|
           2.7.11.1) (Serine/threonine-protein kinase ATPK10)
           (SOS2-like protein kinase PKS3) (SOS-interacting protein
           2) (SNF1-related kinase 3.1)
          Length = 421

 Score = 39.3 bits (90), Expect(2) = 2e-08
 Identities = 20/38 (52%), Positives = 28/38 (73%), Gaps = 2/38 (5%)
 Frame = -3

Query: 638 RRIKSMNAFDIIASSPSFDLSGLFE--ERGEQLRFVSS 531
           +R  ++NAF+II+ S  FDLSGLFE  E  E++RF S+
Sbjct: 299 KRCINLNAFEIISLSTGFDLSGLFEKGEEKEEMRFTSN 336



 Score = 38.9 bits (89), Expect(2) = 2e-08
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
 Frame = -1

Query: 529 RR*TPIISKLEEIAGQVSFTARTKD----CQVSFEATRNGHKGALAISTKIFQLTPELVM 362
           R  + I  KL EI   +    R K+     ++S EAT         +  ++F++ P   M
Sbjct: 337 REASEITEKLVEIGKDLKMKVRKKEHEWRVKMSAEAT--------VVEAEVFEIAPSYHM 388

Query: 361 VQVCKKAGDTAEYRQFCGSELKPGL 287
           V + K  GDTAEY++     ++P L
Sbjct: 389 VVLKKSGGDTAEYKRVMKESIRPAL 413



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>CIPK1_ARATH (Q8RWC9) CBL-interacting serine/threonine-protein kinase 1 (EC|
           2.7.11.1) (SOS2-like protein kinase PKS13) (SNF1-related
           kinase 3.16)
          Length = 444

 Score = 38.9 bits (89), Expect(2) = 2e-05
 Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
 Frame = -1

Query: 514 IISKLEEIAGQVSFTARTKDCQVSFEATRNGHKG--ALAISTKIFQLTPELVMVQVCKKA 341
           ++ K+E    ++ F+ + K  ++  +      KG   L+++ ++F++ P L +V++ K  
Sbjct: 357 LLEKIETAVTEMGFSVQKKHAKLRVKQEERNQKGQVGLSVTAEVFEIKPSLNVVELRKSY 416

Query: 340 GDTAEYRQFCGSELK 296
           GD+  YRQ     LK
Sbjct: 417 GDSCLYRQLYERLLK 431



 Score = 28.5 bits (62), Expect(2) = 2e-05
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = -3

Query: 623 MNAFDIIASSPSFDLSGLFEERG---EQLRFVSSA 528
           +NAF +I  S   DLSG FE+      ++RF S++
Sbjct: 318 INAFQLIGMSSFLDLSGFFEQENVSERRIRFTSNS 352



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>CPK11_ARATH (O22932) CBL-interacting serine/threonine-protein kinase 11 (EC|
           2.7.11.1) (SOS2-like protein kinase PKS5)
           (SOS-interacting protein 4) (SNF1-related kinase 3.22)
          Length = 435

 Score = 36.6 bits (83), Expect = 0.065
 Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
 Frame = -3

Query: 641 IRRIKSMNAFDIIASSPSFDLSGLF----EERGEQLRFVS 534
           +  +KS+NAFD+I+ S   DLSGLF       GE  RF+S
Sbjct: 301 LEAVKSLNAFDLISYSSGLDLSGLFAGCSNSSGESERFLS 340



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>RPOB_DEHSC (Q3ZX01) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1273

 Score = 33.1 bits (74), Expect = 0.72
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = +2

Query: 323 VFSSVSGFLAYLDHDELRRELEYLGGYGQRSLVPISCRLEAHLAILGARREA 478
           +FS  +  + +L+HD+  R L  +G   QR  VP+  R EA +   G  REA
Sbjct: 595 IFSVAASLIPFLEHDDANRAL--MGANMQRQAVPL-LRAEAPMVATGMEREA 643



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>RPOB_DEHE1 (Q3Z8V4) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1272

 Score = 33.1 bits (74), Expect = 0.72
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = +2

Query: 323 VFSSVSGFLAYLDHDELRRELEYLGGYGQRSLVPISCRLEAHLAILGARREA 478
           +FS  +  + +L+HD+  R L  +G   QR  VP+  R EA +   G  REA
Sbjct: 595 IFSVAASLIPFLEHDDANRAL--MGANMQRQAVPL-LRAEAPMVATGMEREA 643



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>IFRH_SOLTU (P52578) Isoflavone reductase homolog (EC 1.3.1.-) (CP100)|
          Length = 308

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
 Frame = +3

Query: 453 QSLVRAVKLTCPAISSSLEMMGVHRRAGHETQLLAALLKQPGQIEAW---RGGDDVERVH 623
           +SLV+A+K     IS+    +G H     + +L+AA+ K+ G ++ +     G+DV+RVH
Sbjct: 68  ESLVKAIKQVDVVIST----VG-HALLADQVKLIAAI-KEAGNVKRFFPSEFGNDVDRVH 121

Query: 624 ALDPSYA 644
           A++P+ A
Sbjct: 122 AVEPAKA 128



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>GLNA_GIBFU (Q9C2U9) Glutamine synthetase (EC 6.3.1.2) (Glutamate--ammonia|
           ligase) (GS)
          Length = 353

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 287 SRSRGWPA*GWPSPDGECCLKF*RIYCGVKSSR 189
           +R  GWPA G+P+P GE        YCGV + +
Sbjct: 141 NRPYGWPAGGFPAPQGE-------YYCGVGTGK 166



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>ZN688_HUMAN (Q8WV14) Zinc finger protein 688|
          Length = 782

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 403 WPALPCAHFLSPRSSLGNPW 462
           WP++ C  F +PR S  NPW
Sbjct: 155 WPSVACPEFCNPRQSPMNPW 174



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>LATA_LATMA (P23631) Alpha-latrotoxin precursor (Alpha-LTX)|
          Length = 1401

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = +2

Query: 251  KAILRQAIHETSKTRLELTAAELPVFSSVSGFLAYLDHDELRRELEYLGGYGQRSLV 421
            K +++  I  T +   + TA ++ + +  S  + YL     +   EY   YG+RSL+
Sbjct: 1155 KLLIKYGIDVTIRNAYDKTALDIAIDAKFSNIVEYLKTKSGKFRREYKSSYGERSLL 1211



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>CYSK2_BRAJU (O23735) Cysteine synthase (EC 2.5.1.47) (O-acetylserine|
           sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase)
           (OAS-TL) (OAS-TL6)
          Length = 324

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -1

Query: 424 GHKGALAISTKIFQLTPELVMVQVCKKAGDTAEYRQFCGSELKPGLRGLVDG 269
           G KGA+A + +I   TP   M+Q  +   +   + +  G E+  G  G +DG
Sbjct: 126 GMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTEGKIDG 177



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>GLNA_COLGL (Q12613) Glutamine synthetase (EC 6.3.1.2) (Glutamate--ammonia|
           ligase) (GS)
          Length = 360

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 290 SSRSRGWPA*GWPSPDGECCLKF*RIYCGVKSSR 189
           S+R  GWPA G+P+P G         YCGV + +
Sbjct: 142 SNRPFGWPANGFPAPQGP-------YYCGVGTGK 168



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>MYH7_RAT (P02564) Myosin heavy chain, cardiac muscle beta isoform (MyHC-beta)|
          Length = 1935

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
 Frame = +2

Query: 266  QAIHETSKTRLELTAAELPVFSSVSGFLAYLDHDE---LRRELEY 391
            ++IHE  K R +L A +L + S++    A L+H+E   LR +LE+
Sbjct: 1521 KSIHELEKIRKQLEAEKLELQSALEEAEASLEHEEGKILRAQLEF 1565



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>MYH7_PIG (P79293) Myosin heavy chain, cardiac muscle beta isoform (MyHC-beta)|
          Length = 1935

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = +2

Query: 266  QAIHETSKTRLELTAAELPVFSSVSGFLAYLDHDE---LRRELEY 391
            + IHE  K R +L A +L + S++    A L+H+E   LR +LE+
Sbjct: 1521 KTIHELEKVRKQLEAEKLELQSALEESEASLEHEEGKILRAQLEF 1565


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,912,285
Number of Sequences: 219361
Number of extensions: 1562414
Number of successful extensions: 4803
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4803
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6029593548
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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