ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5n02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 234 3e-58
2dbj|AP003608.3| Oryza sativa (japonica cultivar-group) genomic D... 234 3e-58
3dbj|AP004810.3| Oryza sativa (japonica cultivar-group) genomic D... 234 3e-58
4dbj|AK065374.1| Oryza sativa (japonica cultivar-group) cDNA clon... 234 3e-58
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 165 2e-37
6emb|AL662994.3|OSJN00192 Oryza sativa genomic DNA, chromosome 4,... 165 2e-37
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 105 2e-19
8dbj|AP002971.2| Oryza sativa (japonica cultivar-group) genomic D... 105 2e-19
9dbj|AP004358.5| Oryza sativa (japonica cultivar-group) genomic D... 105 2e-19
10tpe|BN000542.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 105 2e-19
11dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 100 1e-17
12dbj|AP005383.3| Oryza sativa (japonica cultivar-group) genomic D... 100 1e-17
13dbj|AP004694.3| Oryza sativa (japonica cultivar-group) genomic D... 100 1e-17
14ref|XM_481332.1| Oryza sativa (japonica cultivar-group), mRNA 88 4e-14
15ref|NM_191315.1| Oryza sativa (japonica cultivar-group), predic... 48 0.036
16dbj|AP003409.4| Oryza sativa (japonica cultivar-group) genomic D... 48 0.036
17dbj|AK100202.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.036
18dbj|AK069231.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.036
19dbj|AP003256.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.036
20gb|AC119410.20| Medicago truncatula clone mth2-13n10, complete s... 44 0.56
21ref|XM_550254.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.2
22ref|NM_186856.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.2
23gb|AC104280.2| Oryza sativa (japonica cultivar-group) chromosome... 42 2.2
24gb|AC023105.7| Homo sapiens BAC clone GS1-13M19 from 7, complete... 42 2.2
25dbj|AB097439.1| Oryza sativa (japonica cultivar-group) transposo... 42 2.2
26gb|AC097714.3| Homo sapiens BAC clone RP11-324H7 from 4, complet... 42 2.2
27dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
28dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
29dbj|AP005183.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
30dbj|AP003052.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
31dbj|AP001551.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
32dbj|AP003301.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
33dbj|AP005178.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
34dbj|AK107068.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.2
35gb|AY108681.1| Zea mays PCO122768 mRNA sequence 42 2.2
36dbj|AP002912.2| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
37ref|NM_188346.1| Oryza sativa (japonica cultivar-group), Ozsa809... 40 8.8
38gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence 40 8.8
39ref|XM_478426.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.8
40gb|AC114539.8| Mus musculus chromosome 19, clone RP23-62I23, com... 40 8.8
41gb|AC126276.3| Mus musculus BAC clone RP23-113J19 from 10, compl... 40 8.8
42gb|AF480884.1| Chimpanzee cytomegalovirus, complete genome 40 8.8
43gb|CP000316.1| Polaromonas sp. JS666, complete genome 40 8.8
44emb|AL034485.16|HS839M11 Human DNA sequence from clone RP5-839M1... 40 8.8
45emb|CR848038.1| Chlamydophila abortus strain S26/3, complete genome 40 8.8
46ref|XM_967312.1| PREDICTED: Tribolium castaneum similar to GRIP ... 40 8.8
47ref|XM_966724.1| PREDICTED: Tribolium castaneum similar to CG109... 40 8.8
48gb|AC151845.7| Mus musculus BAC clone RP23-48N11 from chromosome... 40 8.8
49gb|AC026439.4| Homo sapiens chromosome 5 clone CTD-2267H19, comp... 40 8.8
50gb|AC008807.10| Homo sapiens chromosome 5 clone CTD-2087C24, com... 40 8.8
51dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.8
52gb|AC079794.6| Homo sapiens BAC clone RP11-588F18 from 4, comple... 40 8.8
53dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 8.8
54dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.8
55dbj|AP005931.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.8
56dbj|AP005103.5| Oryza sativa (japonica cultivar-group) genomic D... 40 8.8
57gb|AC101911.9| Mus musculus chromosome 19, clone RP24-374E20, co... 40 8.8
58ref|XM_313685.2| Anopheles gambiae str. PEST ENSANGP00000013169 ... 40 8.8
59dbj|AK110479.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.8
60dbj|AK105659.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.8
61gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequ... 40 8.8
62gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.8
63emb|AL928781.4|CNS08CCB Oryza sativa chromosome 12, . BAC OSJNBa... 40 8.8
64emb|AL837528.5|CNS08CAR Oryza sativa chromosome 12, . BAC OSJNBb... 40 8.8
65emb|AL844189.5| Mouse DNA sequence from clone RP23-167P8 on chro... 40 8.8
66emb|Z74409.1|HSU197H3 Human DNA sequence from clone LL0XNC01-197... 40 8.8 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  234 bits (118), Expect = 3e-58
 Identities = 254/298 (85%), Gaps = 1/298 (0%)
 Strand = Plus / Plus

                                                                            
Query: 333      gtgtctccggctttcttgcatacctggaccatgacgagctccggcgtgagctggaatatc 392
                ||||| ||||| |||||||| ||||||||||||||||||||| ||||||||| ||| | |
Sbjct: 20142960 gtgtcgccggccttcttgcacacctggaccatgacgagctcccgcgtgagctcgaacacc 20143019

                                                                            
Query: 393      ttggtggatatggccagcgctcccttgtgcccatttcttgtcgcctcgaagctcacttgg 452
                |||| ||| ||||| ||||| ||||| ||||| || |  |||||||||| |||||| |||
Sbjct: 20143020 ttggcggagatggcgagcgcgcccttctgcccgttccgcgtcgcctcgatgctcacctgg 20143079

                                                                            
Query: 453      caatccttggtgcgcgccgtgaagctaacctgccccgcgatctcctccagcttggagatg 512
                || |||||||| |||||||||||||| |||  ||| |||||||||| |||||||| ||| 
Sbjct: 20143080 cagtccttggtccgcgccgtgaagctcaccatcccggcgatctcctgcagcttggcgata 20143139

                                                                            
Query: 513      atgggtgttcaccggcgcgctggacacgaaacgcaactgctcgccgcgctcctcaaacag 572
                || |  |  ||||||||||| ||||||||| |||| |  ||||||||||||||| |||||
Sbjct: 20143140 at-gtcggccaccggcgcgccggacacgaagcgcatcctctcgccgcgctcctcgaacag 20143198

                                                                          
Query: 573      cccggacagatcgaagcttggcgaggaggcgatgatgtcgaacgcgttcatgctcttg 630
                ||| ||||| |||||||| ||||| || |||||||||||||||||||||| |||||||
Sbjct: 20143199 ccccgacaggtcgaagctcggcgacgacgcgatgatgtcgaacgcgttcaggctcttg 20143256



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 209      aataaattctctaaaatttc 228
                ||||||||||||||||||||
Sbjct: 28829815 aataaattctctaaaatttc 28829834
to top
>dbj|AP003608.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0007G12
          Length = 111819

 Score =  234 bits (118), Expect = 3e-58
 Identities = 254/298 (85%), Gaps = 1/298 (0%)
 Strand = Plus / Plus

                                                                        
Query: 333  gtgtctccggctttcttgcatacctggaccatgacgagctccggcgtgagctggaatatc 392
            ||||| ||||| |||||||| ||||||||||||||||||||| ||||||||| ||| | |
Sbjct: 8960 gtgtcgccggccttcttgcacacctggaccatgacgagctcccgcgtgagctcgaacacc 9019

                                                                        
Query: 393  ttggtggatatggccagcgctcccttgtgcccatttcttgtcgcctcgaagctcacttgg 452
            |||| ||| ||||| ||||| ||||| ||||| || |  |||||||||| |||||| |||
Sbjct: 9020 ttggcggagatggcgagcgcgcccttctgcccgttccgcgtcgcctcgatgctcacctgg 9079

                                                                        
Query: 453  caatccttggtgcgcgccgtgaagctaacctgccccgcgatctcctccagcttggagatg 512
            || |||||||| |||||||||||||| |||  ||| |||||||||| |||||||| ||| 
Sbjct: 9080 cagtccttggtccgcgccgtgaagctcaccatcccggcgatctcctgcagcttggcgata 9139

                                                                        
Query: 513  atgggtgttcaccggcgcgctggacacgaaacgcaactgctcgccgcgctcctcaaacag 572
            || |  |  ||||||||||| ||||||||| |||| |  ||||||||||||||| |||||
Sbjct: 9140 at-gtcggccaccggcgcgccggacacgaagcgcatcctctcgccgcgctcctcgaacag 9198

                                                                      
Query: 573  cccggacagatcgaagcttggcgaggaggcgatgatgtcgaacgcgttcatgctcttg 630
            ||| ||||| |||||||| ||||| || |||||||||||||||||||||| |||||||
Sbjct: 9199 ccccgacaggtcgaagctcggcgacgacgcgatgatgtcgaacgcgttcaggctcttg 9256
to top
>dbj|AP004810.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:B1068H08
          Length = 152794

 Score =  234 bits (118), Expect = 3e-58
 Identities = 254/298 (85%), Gaps = 1/298 (0%)
 Strand = Plus / Plus

                                                                          
Query: 333    gtgtctccggctttcttgcatacctggaccatgacgagctccggcgtgagctggaatatc 392
              ||||| ||||| |||||||| ||||||||||||||||||||| ||||||||| ||| | |
Sbjct: 131234 gtgtcgccggccttcttgcacacctggaccatgacgagctcccgcgtgagctcgaacacc 131293

                                                                          
Query: 393    ttggtggatatggccagcgctcccttgtgcccatttcttgtcgcctcgaagctcacttgg 452
              |||| ||| ||||| ||||| ||||| ||||| || |  |||||||||| |||||| |||
Sbjct: 131294 ttggcggagatggcgagcgcgcccttctgcccgttccgcgtcgcctcgatgctcacctgg 131353

                                                                          
Query: 453    caatccttggtgcgcgccgtgaagctaacctgccccgcgatctcctccagcttggagatg 512
              || |||||||| |||||||||||||| |||  ||| |||||||||| |||||||| ||| 
Sbjct: 131354 cagtccttggtccgcgccgtgaagctcaccatcccggcgatctcctgcagcttggcgata 131413

                                                                          
Query: 513    atgggtgttcaccggcgcgctggacacgaaacgcaactgctcgccgcgctcctcaaacag 572
              || |  |  ||||||||||| ||||||||| |||| |  ||||||||||||||| |||||
Sbjct: 131414 at-gtcggccaccggcgcgccggacacgaagcgcatcctctcgccgcgctcctcgaacag 131472

                                                                        
Query: 573    cccggacagatcgaagcttggcgaggaggcgatgatgtcgaacgcgttcatgctcttg 630
              ||| ||||| |||||||| ||||| || |||||||||||||||||||||| |||||||
Sbjct: 131473 ccccgacaggtcgaagctcggcgacgacgcgatgatgtcgaacgcgttcaggctcttg 131530
to top
>dbj|AK065374.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013003B24, full
            insert sequence
          Length = 1884

 Score =  234 bits (118), Expect = 3e-58
 Identities = 254/298 (85%), Gaps = 1/298 (0%)
 Strand = Plus / Minus

                                                                        
Query: 333  gtgtctccggctttcttgcatacctggaccatgacgagctccggcgtgagctggaatatc 392
            ||||| ||||| |||||||| ||||||||||||||||||||| ||||||||| ||| | |
Sbjct: 1492 gtgtcgccggccttcttgcacacctggaccatgacgagctcccgcgtgagctcgaacacc 1433

                                                                        
Query: 393  ttggtggatatggccagcgctcccttgtgcccatttcttgtcgcctcgaagctcacttgg 452
            |||| ||| ||||| ||||| ||||| ||||| || |  |||||||||| |||||| |||
Sbjct: 1432 ttggcggagatggcgagcgcgcccttctgcccgttccgcgtcgcctcgatgctcacctgg 1373

                                                                        
Query: 453  caatccttggtgcgcgccgtgaagctaacctgccccgcgatctcctccagcttggagatg 512
            || |||||||| |||||||||||||| |||  ||| |||||||||| |||||||| ||| 
Sbjct: 1372 cagtccttggtccgcgccgtgaagctcaccatcccggcgatctcctgcagcttggcgata 1313

                                                                        
Query: 513  atgggtgttcaccggcgcgctggacacgaaacgcaactgctcgccgcgctcctcaaacag 572
            || |  |  ||||||||||| ||||||||| |||| |  ||||||||||||||| |||||
Sbjct: 1312 at-gtcggccaccggcgcgccggacacgaagcgcatcctctcgccgcgctcctcgaacag 1254

                                                                      
Query: 573  cccggacagatcgaagcttggcgaggaggcgatgatgtcgaacgcgttcatgctcttg 630
            ||| ||||| |||||||| ||||| || |||||||||||||||||||||| |||||||
Sbjct: 1253 ccccgacaggtcgaagctcggcgacgacgcgatgatgtcgaacgcgttcaggctcttg 1196
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score =  165 bits (83), Expect = 2e-37
 Identities = 222/267 (83%), Gaps = 1/267 (0%)
 Strand = Plus / Plus

                                                                           
Query: 354     acctggaccatgacgagctccggcgtgagctggaatatcttggtggatatggccagcgct 413
               |||||||||||||||||||||  |||||||| ||| | ||||| ||| ||||| ||||| 
Sbjct: 5627866 acctggaccatgacgagctcccacgtgagctcgaacaccttggcggagatggcgagcgcg 5627925

                                                                           
Query: 414     cccttgtgcccatttcttgtcgcctcgaagctcacttggcaatccttggtgcgcgccgtg 473
               ||||| ||||| ||    |||||||||| |||||| ||||| |||||||| |||||| ||
Sbjct: 5627926 cccttctgcccgttctgcgtcgcctcgatgctcacctggcagtccttggtccgcgccatg 5627985

                                                                           
Query: 474     aagctaacctgccccgcgatctcctccagcttggagatgatgggtgttcaccggcgcgct 533
               ||||| |||   || ||||||||||| ||||||| |||||| |  |  ||||| ||||| 
Sbjct: 5627986 aagctcaccatgccggcgatctcctctagcttggcgatgat-gtcggccaccgacgcgcc 5628044

                                                                           
Query: 534     ggacacgaaacgcaactgctcgccgcgctcctcaaacagcccggacagatcgaagcttgg 593
               ||||||||| |||| |  ||||||||||||||  |||||||||||||| |||||||| ||
Sbjct: 5628045 ggacacgaagcgcatcctctcgccgcgctcctggaacagcccggacaggtcgaagctcgg 5628104

                                          
Query: 594     cgaggaggcgatgatgtcgaacgcgtt 620
               ||| || || |||||||||||||||||
Sbjct: 5628105 cgacgatgcaatgatgtcgaacgcgtt 5628131
to top
>emb|AL662994.3|OSJN00192 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0006L01,
             complete sequence
          Length = 162227

 Score =  165 bits (83), Expect = 2e-37
 Identities = 222/267 (83%), Gaps = 1/267 (0%)
 Strand = Plus / Plus

                                                                         
Query: 354   acctggaccatgacgagctccggcgtgagctggaatatcttggtggatatggccagcgct 413
             |||||||||||||||||||||  |||||||| ||| | ||||| ||| ||||| ||||| 
Sbjct: 85073 acctggaccatgacgagctcccacgtgagctcgaacaccttggcggagatggcgagcgcg 85132

                                                                         
Query: 414   cccttgtgcccatttcttgtcgcctcgaagctcacttggcaatccttggtgcgcgccgtg 473
             ||||| ||||| ||    |||||||||| |||||| ||||| |||||||| |||||| ||
Sbjct: 85133 cccttctgcccgttctgcgtcgcctcgatgctcacctggcagtccttggtccgcgccatg 85192

                                                                         
Query: 474   aagctaacctgccccgcgatctcctccagcttggagatgatgggtgttcaccggcgcgct 533
             ||||| |||   || ||||||||||| ||||||| |||||| |  |  ||||| ||||| 
Sbjct: 85193 aagctcaccatgccggcgatctcctctagcttggcgatgat-gtcggccaccgacgcgcc 85251

                                                                         
Query: 534   ggacacgaaacgcaactgctcgccgcgctcctcaaacagcccggacagatcgaagcttgg 593
             ||||||||| |||| |  ||||||||||||||  |||||||||||||| |||||||| ||
Sbjct: 85252 ggacacgaagcgcatcctctcgccgcgctcctggaacagcccggacaggtcgaagctcgg 85311

                                        
Query: 594   cgaggaggcgatgatgtcgaacgcgtt 620
             ||| || || |||||||||||||||||
Sbjct: 85312 cgacgatgcaatgatgtcgaacgcgtt 85338
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  105 bits (53), Expect = 2e-19
 Identities = 213/265 (80%), Gaps = 1/265 (0%)
 Strand = Plus / Plus

                                                                            
Query: 356      ctggaccatgacgagctccggcgtgagctggaatatcttggtggatatggccagcgctcc 415
                ||||||||||||||||||    ||||||| ||| | ||||| ||| ||||| ||||| | 
Sbjct: 12496072 ctggaccatgacgagctcacatgtgagctcgaacaccttggcggagatggcgagcgcgct 12496131

                                                                            
Query: 416      cttgtgcccatttcttgtcgcctcgaagctcacttggcaatccttggtgcgcgccgtgaa 475
                ||| || || || |  |||||||||| |||||| ||||| |||||||| | |||| ||||
Sbjct: 12496132 cttctgtccgttccgcgtcgcctcgatgctcacctggcagtccttggtccacgccatgaa 12496191

                                                                            
Query: 476      gctaacctgccccgcgatctcctccagcttggagatgatgggtgttcaccggcgcgctgg 535
                ||| |||   || ||||||||||| ||||||| |||||| |  |  ||||| ||||| ||
Sbjct: 12496192 gctcaccatgccggcgatctcctctagcttggcgatgat-gtcggccaccgacgcgccgg 12496250

                                                                            
Query: 536      acacgaaacgcaactgctcgccgcgctcctcaaacagcccggacagatcgaagcttggcg 595
                ||||||| |||| |  |||||| |||||||  |||||||||||||  |||||||| ||||
Sbjct: 12496251 acacgaagcgcatcctctcgccacgctcctggaacagcccggacatgtcgaagctcggcg 12496310

                                         
Query: 596      aggaggcgatgatgtcgaacgcgtt 620
                | || || |||||||||||| ||||
Sbjct: 12496311 acgatgcaatgatgtcgaacccgtt 12496335



 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                        
Query: 487      ccgcgatctcctccagcttggaga 510
                ||||||||||||||||||||||||
Sbjct: 31932183 ccgcgatctcctccagcttggaga 31932206



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 603      gatgatgtcgaacgcgttcatgctc 627
                |||||||||||| ||||||||||||
Sbjct: 31932304 gatgatgtcgaaggcgttcatgctc 31932328



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 603     gatgatgtcgaacgcgttcatgctc 627
               |||||||||||||||||||| ||||
Sbjct: 5799716 gatgatgtcgaacgcgttcaggctc 5799692



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 603     gatgatgtcgaacgcgttcatgctc 627
               |||||||||||||||||||| ||||
Sbjct: 3429789 gatgatgtcgaacgcgttcaggctc 3429765
to top
>dbj|AP002971.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0537A05
          Length = 152396

 Score =  105 bits (53), Expect = 2e-19
 Identities = 213/265 (80%), Gaps = 1/265 (0%)
 Strand = Plus / Plus

                                                                        
Query: 356  ctggaccatgacgagctccggcgtgagctggaatatcttggtggatatggccagcgctcc 415
            ||||||||||||||||||    ||||||| ||| | ||||| ||| ||||| ||||| | 
Sbjct: 7682 ctggaccatgacgagctcacatgtgagctcgaacaccttggcggagatggcgagcgcgct 7741

                                                                        
Query: 416  cttgtgcccatttcttgtcgcctcgaagctcacttggcaatccttggtgcgcgccgtgaa 475
            ||| || || || |  |||||||||| |||||| ||||| |||||||| | |||| ||||
Sbjct: 7742 cttctgtccgttccgcgtcgcctcgatgctcacctggcagtccttggtccacgccatgaa 7801

                                                                        
Query: 476  gctaacctgccccgcgatctcctccagcttggagatgatgggtgttcaccggcgcgctgg 535
            ||| |||   || ||||||||||| ||||||| |||||| |  |  ||||| ||||| ||
Sbjct: 7802 gctcaccatgccggcgatctcctctagcttggcgatgat-gtcggccaccgacgcgccgg 7860

                                                                        
Query: 536  acacgaaacgcaactgctcgccgcgctcctcaaacagcccggacagatcgaagcttggcg 595
            ||||||| |||| |  |||||| |||||||  |||||||||||||  |||||||| ||||
Sbjct: 7861 acacgaagcgcatcctctcgccacgctcctggaacagcccggacatgtcgaagctcggcg 7920

                                     
Query: 596  aggaggcgatgatgtcgaacgcgtt 620
            | || || |||||||||||| ||||
Sbjct: 7921 acgatgcaatgatgtcgaacccgtt 7945
to top
>dbj|AP004358.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1135C02
          Length = 152306

 Score =  105 bits (53), Expect = 2e-19
 Identities = 213/265 (80%), Gaps = 1/265 (0%)
 Strand = Plus / Plus

                                                                         
Query: 356   ctggaccatgacgagctccggcgtgagctggaatatcttggtggatatggccagcgctcc 415
             ||||||||||||||||||    ||||||| ||| | ||||| ||| ||||| ||||| | 
Sbjct: 81687 ctggaccatgacgagctcacatgtgagctcgaacaccttggcggagatggcgagcgcgct 81746

                                                                         
Query: 416   cttgtgcccatttcttgtcgcctcgaagctcacttggcaatccttggtgcgcgccgtgaa 475
             ||| || || || |  |||||||||| |||||| ||||| |||||||| | |||| ||||
Sbjct: 81747 cttctgtccgttccgcgtcgcctcgatgctcacctggcagtccttggtccacgccatgaa 81806

                                                                         
Query: 476   gctaacctgccccgcgatctcctccagcttggagatgatgggtgttcaccggcgcgctgg 535
             ||| |||   || ||||||||||| ||||||| |||||| |  |  ||||| ||||| ||
Sbjct: 81807 gctcaccatgccggcgatctcctctagcttggcgatgat-gtcggccaccgacgcgccgg 81865

                                                                         
Query: 536   acacgaaacgcaactgctcgccgcgctcctcaaacagcccggacagatcgaagcttggcg 595
             ||||||| |||| |  |||||| |||||||  |||||||||||||  |||||||| ||||
Sbjct: 81866 acacgaagcgcatcctctcgccacgctcctggaacagcccggacatgtcgaagctcggcg 81925

                                      
Query: 596   aggaggcgatgatgtcgaacgcgtt 620
             | || || |||||||||||| ||||
Sbjct: 81926 acgatgcaatgatgtcgaacccgtt 81950
to top
>tpe|BN000542.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx13 gene for
            class III peroxidase 13 precursor, exons 1-3
          Length = 9315

 Score =  105 bits (53), Expect = 2e-19
 Identities = 213/265 (80%), Gaps = 1/265 (0%)
 Strand = Plus / Plus

                                                                        
Query: 356  ctggaccatgacgagctccggcgtgagctggaatatcttggtggatatggccagcgctcc 415
            ||||||||||||||||||    ||||||| ||| | ||||| ||| ||||| ||||| | 
Sbjct: 3571 ctggaccatgacgagctcacatgtgagctcgaacaccttggcggagatggcgagcgcgct 3630

                                                                        
Query: 416  cttgtgcccatttcttgtcgcctcgaagctcacttggcaatccttggtgcgcgccgtgaa 475
            ||| || || || |  |||||||||| |||||| ||||| |||||||| | |||| ||||
Sbjct: 3631 cttctgtccgttccgcgtcgcctcgatgctcacctggcagtccttggtccacgccatgaa 3690

                                                                        
Query: 476  gctaacctgccccgcgatctcctccagcttggagatgatgggtgttcaccggcgcgctgg 535
            ||| |||   || ||||||||||| ||||||| |||||| |  |  ||||| ||||| ||
Sbjct: 3691 gctcaccatgccggcgatctcctctagcttggcgatgat-gtcggccaccgacgcgccgg 3749

                                                                        
Query: 536  acacgaaacgcaactgctcgccgcgctcctcaaacagcccggacagatcgaagcttggcg 595
            ||||||| |||| |  |||||| |||||||  |||||||||||||  |||||||| ||||
Sbjct: 3750 acacgaagcgcatcctctcgccacgctcctggaacagcccggacatgtcgaagctcggcg 3809

                                     
Query: 596  aggaggcgatgatgtcgaacgcgtt 620
            | || || |||||||||||| ||||
Sbjct: 3810 acgatgcaatgatgtcgaacccgtt 3834
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 120/142 (84%), Gaps = 1/142 (0%)
 Strand = Plus / Minus

                                                                            
Query: 489      gcgatctcctccagcttggagatgatgggtgttcaccggcgcgctggacacgaaacgcaa 548
                ||||||||||||||||||| |||||||   |  |||| |||||| ||||| |||  ||| 
Sbjct: 11596142 gcgatctcctccagcttggcgatgatgtcggc-caccagcgcgccggacatgaagtgcat 11596084

                                                                            
Query: 549      ctgctcgccgcgctcctcaaacagcccggacagatcgaagcttggcgaggaggcgatgat 608
                |  |||||||||||||||||||||| | ||||| ||||||||  |||| || ||||||||
Sbjct: 11596083 cctctcgccgcgctcctcaaacagctcagacaggtcgaagctcagcgacgacgcgatgat 11596024

                                      
Query: 609      gtcgaacgcgttcatgctcttg 630
                |||||||||||||| |||||||
Sbjct: 11596023 gtcgaacgcgttcaggctcttg 11596002



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 98/116 (84%)
 Strand = Plus / Minus

                                                                            
Query: 333      gtgtctccggctttcttgcatacctggaccatgacgagctccggcgtgagctggaatatc 392
                ||||| ||||| |||||||| ||||||||||||||||||||| ||||||||| ||| | |
Sbjct: 11596265 gtgtcgccggccttcttgcacacctggaccatgacgagctcccgcgtgagctcgaacacc 11596206

                                                                        
Query: 393      ttggtggatatggccagcgctcccttgtgcccatttcttgtcgcctcgaagctcac 448
                |||| ||| ||||| || || ||||| ||||| || |  |||||||||| ||||||
Sbjct: 11596205 ttggaggagatggcgagtgcgcccttatgcccgttccgcgtcgcctcgatgctcac 11596150
to top
>dbj|AP005383.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1034_C08
          Length = 154441

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 120/142 (84%), Gaps = 1/142 (0%)
 Strand = Plus / Minus

                                                                          
Query: 489    gcgatctcctccagcttggagatgatgggtgttcaccggcgcgctggacacgaaacgcaa 548
              ||||||||||||||||||| |||||||   |  |||| |||||| ||||| |||  ||| 
Sbjct: 150276 gcgatctcctccagcttggcgatgatgtcggc-caccagcgcgccggacatgaagtgcat 150218

                                                                          
Query: 549    ctgctcgccgcgctcctcaaacagcccggacagatcgaagcttggcgaggaggcgatgat 608
              |  |||||||||||||||||||||| | ||||| ||||||||  |||| || ||||||||
Sbjct: 150217 cctctcgccgcgctcctcaaacagctcagacaggtcgaagctcagcgacgacgcgatgat 150158

                                    
Query: 609    gtcgaacgcgttcatgctcttg 630
              |||||||||||||| |||||||
Sbjct: 150157 gtcgaacgcgttcaggctcttg 150136



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 98/116 (84%)
 Strand = Plus / Minus

                                                                          
Query: 333    gtgtctccggctttcttgcatacctggaccatgacgagctccggcgtgagctggaatatc 392
              ||||| ||||| |||||||| ||||||||||||||||||||| ||||||||| ||| | |
Sbjct: 150399 gtgtcgccggccttcttgcacacctggaccatgacgagctcccgcgtgagctcgaacacc 150340

                                                                      
Query: 393    ttggtggatatggccagcgctcccttgtgcccatttcttgtcgcctcgaagctcac 448
              |||| ||| ||||| || || ||||| ||||| || |  |||||||||| ||||||
Sbjct: 150339 ttggaggagatggcgagtgcgcccttatgcccgttccgcgtcgcctcgatgctcac 150284
to top
>dbj|AP004694.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0467G09
          Length = 158204

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 120/142 (84%), Gaps = 1/142 (0%)
 Strand = Plus / Minus

                                                                         
Query: 489   gcgatctcctccagcttggagatgatgggtgttcaccggcgcgctggacacgaaacgcaa 548
             ||||||||||||||||||| |||||||   |  |||| |||||| ||||| |||  ||| 
Sbjct: 56413 gcgatctcctccagcttggcgatgatgtcggc-caccagcgcgccggacatgaagtgcat 56355

                                                                         
Query: 549   ctgctcgccgcgctcctcaaacagcccggacagatcgaagcttggcgaggaggcgatgat 608
             |  |||||||||||||||||||||| | ||||| ||||||||  |||| || ||||||||
Sbjct: 56354 cctctcgccgcgctcctcaaacagctcagacaggtcgaagctcagcgacgacgcgatgat 56295

                                   
Query: 609   gtcgaacgcgttcatgctcttg 630
             |||||||||||||| |||||||
Sbjct: 56294 gtcgaacgcgttcaggctcttg 56273



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 98/116 (84%)
 Strand = Plus / Minus

                                                                         
Query: 333   gtgtctccggctttcttgcatacctggaccatgacgagctccggcgtgagctggaatatc 392
             ||||| ||||| |||||||| ||||||||||||||||||||| ||||||||| ||| | |
Sbjct: 56536 gtgtcgccggccttcttgcacacctggaccatgacgagctcccgcgtgagctcgaacacc 56477

                                                                     
Query: 393   ttggtggatatggccagcgctcccttgtgcccatttcttgtcgcctcgaagctcac 448
             |||| ||| ||||| || || ||||| ||||| || |  |||||||||| ||||||
Sbjct: 56476 ttggaggagatggcgagtgcgcccttatgcccgttccgcgtcgcctcgatgctcac 56421
to top
>ref|XM_481332.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 768

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 98/116 (84%)
 Strand = Plus / Minus

                                                                       
Query: 333 gtgtctccggctttcttgcatacctggaccatgacgagctccggcgtgagctggaatatc 392
           ||||| ||||| |||||||| ||||||||||||||||||||| ||||||||| ||| | |
Sbjct: 629 gtgtcgccggccttcttgcacacctggaccatgacgagctcccgcgtgagctcgaacacc 570

                                                                   
Query: 393 ttggtggatatggccagcgctcccttgtgcccatttcttgtcgcctcgaagctcac 448
           |||| ||| ||||| || || ||||| ||||| || |  |||||||||| ||||||
Sbjct: 569 ttggaggagatggcgagtgcgcccttatgcccgttccgcgtcgcctcgatgctcac 514



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 489 gcgatctcctccagcttggagatgatg 515
           ||||||||||||||||||| |||||||
Sbjct: 506 gcgatctcctccagcttggcgatgatg 480
to top
>ref|NM_191315.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1425

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 487  ccgcgatctcctccagcttggaga 510
            ||||||||||||||||||||||||
Sbjct: 1135 ccgcgatctcctccagcttggaga 1112



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 603  gatgatgtcgaacgcgttcatgctc 627
            |||||||||||| ||||||||||||
Sbjct: 1014 gatgatgtcgaaggcgttcatgctc 990
to top
>dbj|AP003409.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1131G08
          Length = 158241

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 487    ccgcgatctcctccagcttggaga 510
              ||||||||||||||||||||||||
Sbjct: 118261 ccgcgatctcctccagcttggaga 118284



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 603    gatgatgtcgaacgcgttcatgctc 627
              |||||||||||| ||||||||||||
Sbjct: 118382 gatgatgtcgaaggcgttcatgctc 118406
to top
>dbj|AK100202.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023040M01, full
            insert sequence
          Length = 1628

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 487  ccgcgatctcctccagcttggaga 510
            ||||||||||||||||||||||||
Sbjct: 1261 ccgcgatctcctccagcttggaga 1238



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 603  gatgatgtcgaacgcgttcatgctc 627
            |||||||||||| ||||||||||||
Sbjct: 1140 gatgatgtcgaaggcgttcatgctc 1116
to top
>dbj|AK069231.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023013G02, full
            insert sequence
          Length = 1690

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 487  ccgcgatctcctccagcttggaga 510
            ||||||||||||||||||||||||
Sbjct: 1253 ccgcgatctcctccagcttggaga 1230



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 603  gatgatgtcgaacgcgttcatgctc 627
            |||||||||||| ||||||||||||
Sbjct: 1132 gatgatgtcgaaggcgttcatgctc 1108
to top
>dbj|AP003256.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0460E08
          Length = 170021

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 487   ccgcgatctcctccagcttggaga 510
             ||||||||||||||||||||||||
Sbjct: 28910 ccgcgatctcctccagcttggaga 28933



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 603   gatgatgtcgaacgcgttcatgctc 627
             |||||||||||| ||||||||||||
Sbjct: 29031 gatgatgtcgaaggcgttcatgctc 29055
to top
>gb|AC119410.20| Medicago truncatula clone mth2-13n10, complete sequence
          Length = 108232

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 188   ccctgctgcttttcaccccacaataa 213
             |||| |||||||||||||||||||||
Sbjct: 39728 ccctactgcttttcaccccacaataa 39753
to top
>ref|XM_550254.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 597

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 603 gatgatgtcgaacgcgttcatgctc 627
           |||||||||||||||||||| ||||
Sbjct: 183 gatgatgtcgaacgcgttcaggctc 159
to top
>ref|NM_186856.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1194

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 603 gatgatgtcgaacgcgttcatgctc 627
           |||||||||||||||||||| ||||
Sbjct: 180 gatgatgtcgaacgcgttcaggctc 156
to top
>gb|AC104280.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1430_B02,
             complete sequence
          Length = 75456

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 603   gatgatgtcgaacgcgttcatgctc 627
             |||||||||||||||||||| ||||
Sbjct: 54991 gatgatgtcgaacgcgttcaagctc 55015
to top
>gb|AC023105.7| Homo sapiens BAC clone GS1-13M19 from 7, complete sequence
          Length = 70876

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 19    cagtctgtgaaacttaaatta 39
             |||||||||||||||||||||
Sbjct: 35782 cagtctgtgaaacttaaatta 35762
to top
>dbj|AB097439.1| Oryza sativa (japonica cultivar-group) transposon AnacC1 DNA,
           complete sequence
          Length = 1868

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 603 gatgatgtcgaacgcgttcatgctc 627
           |||||||||||||||||||| ||||
Sbjct: 808 gatgatgtcgaacgcgttcaggctc 832
to top
>gb|AC097714.3| Homo sapiens BAC clone RP11-324H7 from 4, complete sequence
          Length = 181756

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 505   tggagatgatgggtgttcacc 525
             |||||||||||||||||||||
Sbjct: 33864 tggagatgatgggtgttcacc 33884
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 603     gatgatgtcgaacgcgttcatgctc 627
               |||||||||||||||||||| ||||
Sbjct: 8393355 gatgatgtcgaacgcgttcaggctc 8393379



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 597      ggaggcgatgatgtcgaacg 616
                ||||||||||||||||||||
Sbjct: 19932780 ggaggcgatgatgtcgaacg 19932761
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 603     gatgatgtcgaacgcgttcatgctc 627
               |||||||||||||||||||| ||||
Sbjct: 6616937 gatgatgtcgaacgcgttcaagctc 6616961
to top
>dbj|AP005183.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0021G06
          Length = 137678

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 603   gatgatgtcgaacgcgttcatgctc 627
             |||||||||||||||||||| ||||
Sbjct: 98453 gatgatgtcgaacgcgttcaggctc 98477
to top
>dbj|AP003052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:OSJNBa0016I09
          Length = 148517

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 603  gatgatgtcgaacgcgttcatgctc 627
            |||||||||||||||||||| ||||
Sbjct: 3457 gatgatgtcgaacgcgttcaggctc 3433
to top
>dbj|AP001551.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0451C06
          Length = 151773

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 603    gatgatgtcgaacgcgttcatgctc 627
              |||||||||||||||||||| ||||
Sbjct: 124418 gatgatgtcgaacgcgttcaggctc 124394
to top
>dbj|AP003301.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0701D05
          Length = 172161

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 603    gatgatgtcgaacgcgttcatgctc 627
              |||||||||||||||||||| ||||
Sbjct: 108159 gatgatgtcgaacgcgttcaggctc 108135
to top
>dbj|AP005178.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0056I06
          Length = 138653

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 603   gatgatgtcgaacgcgttcatgctc 627
             |||||||||||||||||||| ||||
Sbjct: 24948 gatgatgtcgaacgcgttcaggctc 24972
to top
>dbj|AK107068.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-121-E08, full
            insert sequence
          Length = 1881

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 603  gatgatgtcgaacgcgttcatgctc 627
            |||||||||||||||||||| ||||
Sbjct: 1072 gatgatgtcgaacgcgttcaagctc 1048
to top
>gb|AY108681.1| Zea mays PCO122768 mRNA sequence
          Length = 986

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 603 gatgatgtcgaacgcgttcatgctc 627
           |||||||||||||||||||| ||||
Sbjct: 355 gatgatgtcgaacgcgttcaggctc 331
to top
>dbj|AP002912.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0028E10
          Length = 140791

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 603   gatgatgtcgaacgcgttcatgctc 627
             |||||||||||||||||||| ||||
Sbjct: 16549 gatgatgtcgaacgcgttcaggctc 16525
to top
>ref|NM_188346.1| Oryza sativa (japonica cultivar-group), Ozsa8097 predicted mRNA
          Length = 1434

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 603  gatgatgtcgaacgcgttca 622
            ||||||||||||||||||||
Sbjct: 1047 gatgatgtcgaacgcgttca 1028
to top
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence
          Length = 1395069

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 544    cgcaactgctcgccgcgctc 563
              ||||||||||||||||||||
Sbjct: 776887 cgcaactgctcgccgcgctc 776868
to top
>ref|XM_478426.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1822

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 597 ggaggcgatgatgtcgaacg 616
           ||||||||||||||||||||
Sbjct: 597 ggaggcgatgatgtcgaacg 578
to top
>gb|AC114539.8| Mus musculus chromosome 19, clone RP23-62I23, complete sequence
          Length = 249767

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 3     acttaactgcagaaaacagt 22
             ||||||||||||||||||||
Sbjct: 10138 acttaactgcagaaaacagt 10119
to top
>gb|AC126276.3| Mus musculus BAC clone RP23-113J19 from 10, complete sequence
          Length = 195021

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 212   aaattctctaaaatttcaag 231
             ||||||||||||||||||||
Sbjct: 58625 aaattctctaaaatttcaag 58606
to top
>gb|AF480884.1| Chimpanzee cytomegalovirus, complete genome
          Length = 241087

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 434   cgcctcgaagctcacttggc 453
             ||||||||||||||||||||
Sbjct: 53644 cgcctcgaagctcacttggc 53663
to top
>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 261     tcaggcaggccatccacgag 280
               ||||||||||||||||||||
Sbjct: 5067969 tcaggcaggccatccacgag 5067950
to top
>emb|AL034485.16|HS839M11 Human DNA sequence from clone RP5-839M11 on chromosome Xq21.1-23
             Contains two novel histone H2B pseudogenes and a CpG
             island, complete sequence
          Length = 47854

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    gtctgtgaaacttaaattag 40
             ||||||||||||||||||||
Sbjct: 16996 gtctgtgaaacttaaattag 17015
to top
>emb|CR848038.1| Chlamydophila abortus strain S26/3, complete genome
          Length = 1144377

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 208    caataaattctctaaaattt 227
              ||||||||||||||||||||
Sbjct: 722771 caataaattctctaaaattt 722790
to top
>ref|XM_967312.1| PREDICTED: Tribolium castaneum similar to GRIP and coiled-coil
            domain-containing 2 (LOC661131), mRNA
          Length = 3972

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 494  ctcctccagcttggagatga 513
            ||||||||||||||||||||
Sbjct: 1329 ctcctccagcttggagatga 1310
to top
>ref|XM_966724.1| PREDICTED: Tribolium castaneum similar to CG10958-PA (LOC660497),
           mRNA
          Length = 2451

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 365 gacgagctccggcgtgagctggaa 388
           |||||||||| |||||||||||||
Sbjct: 862 gacgagctccagcgtgagctggaa 885
to top
>gb|AC151845.7| Mus musculus BAC clone RP23-48N11 from chromosome 10, complete sequence
          Length = 204309

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 212   aaattctctaaaatttcaag 231
             ||||||||||||||||||||
Sbjct: 21867 aaattctctaaaatttcaag 21886
to top
>gb|AC026439.4| Homo sapiens chromosome 5 clone CTD-2267H19, complete sequence
          Length = 105081

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 211  taaattctctaaaatttcaa 230
            ||||||||||||||||||||
Sbjct: 4884 taaattctctaaaatttcaa 4865
to top
>gb|AC008807.10| Homo sapiens chromosome 5 clone CTD-2087C24, complete sequence
          Length = 126189

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 211   taaattctctaaaatttcaa 230
             ||||||||||||||||||||
Sbjct: 44185 taaattctctaaaatttcaa 44204
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 603      gatgatgtcgaacgcgttca 622
                ||||||||||||||||||||
Sbjct: 25478861 gatgatgtcgaacgcgttca 25478880
to top
>gb|AC079794.6| Homo sapiens BAC clone RP11-588F18 from 4, complete sequence
          Length = 49580

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 252   aggccatcctcaggcaggccatcc 275
             ||||||||||| ||||||||||||
Sbjct: 33759 aggccatcctccggcaggccatcc 33736



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 252   aggccatcctcaggcaggccatcc 275
             ||||||||||| ||||||||||||
Sbjct: 33729 aggccatcctccggcaggccatcc 33706



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 252   aggccatcctcaggcaggccatcc 275
             ||||||||||| ||||||||||||
Sbjct: 33714 aggccatcctccggcaggccatcc 33691
to top
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 366   acgagctccggcgtgagctg 385
             ||||||||||||||||||||
Sbjct: 76693 acgagctccggcgtgagctg 76712
to top
>dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0028E05
          Length = 157631

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 209    aataaattctctaaaatttc 228
              ||||||||||||||||||||
Sbjct: 137590 aataaattctctaaaatttc 137609
to top
>dbj|AP005931.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0545E05
          Length = 163229

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 209  aataaattctctaaaatttc 228
            ||||||||||||||||||||
Sbjct: 4901 aataaattctctaaaatttc 4920
to top
>dbj|AP005103.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0036M16
          Length = 158880

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 597   ggaggcgatgatgtcgaacg 616
             ||||||||||||||||||||
Sbjct: 97430 ggaggcgatgatgtcgaacg 97411
to top
>gb|AC101911.9| Mus musculus chromosome 19, clone RP24-374E20, complete sequence
          Length = 118431

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     acttaactgcagaaaacagt 22
             ||||||||||||||||||||
Sbjct: 16341 acttaactgcagaaaacagt 16360
to top
>ref|XM_313685.2| Anopheles gambiae str. PEST ENSANGP00000013169
           (ENSANGG00000010680), partial mRNA
          Length = 906

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 602 cgatgatgtcgaacgcgttc 621
           ||||||||||||||||||||
Sbjct: 895 cgatgatgtcgaacgcgttc 876
to top
>dbj|AK110479.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-167-A03, full
            insert sequence
          Length = 3296

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 548  actgctcgccgcgctcctca 567
            ||||||||||||||||||||
Sbjct: 1349 actgctcgccgcgctcctca 1330
to top
>dbj|AK105659.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-G10, full
           insert sequence
          Length = 1822

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 597 ggaggcgatgatgtcgaacg 616
           ||||||||||||||||||||
Sbjct: 597 ggaggcgatgatgtcgaacg 578
to top
>gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequence
          Length = 2906179

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 344     tttcttgcatacctggacca 363
               ||||||||||||||||||||
Sbjct: 2890611 tttcttgcatacctggacca 2890592
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 603      gatgatgtcgaacgcgttca 622
                ||||||||||||||||||||
Sbjct: 25407037 gatgatgtcgaacgcgttca 25407056
to top
>emb|AL928781.4|CNS08CCB Oryza sativa chromosome 12, . BAC OSJNBa0070E09 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 144084

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 603   gatgatgtcgaacgcgttca 622
             ||||||||||||||||||||
Sbjct: 48243 gatgatgtcgaacgcgttca 48262
to top
>emb|AL837528.5|CNS08CAR Oryza sativa chromosome 12, . BAC OSJNBb0062H20 of library OSJNBb from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 152914

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 603    gatgatgtcgaacgcgttca 622
              ||||||||||||||||||||
Sbjct: 145669 gatgatgtcgaacgcgttca 145688
to top
>emb|AL844189.5| Mouse DNA sequence from clone RP23-167P8 on chromosome X, complete
             sequence
          Length = 38266

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 411   gctcccttgtgcccatttct 430
             ||||||||||||||||||||
Sbjct: 14048 gctcccttgtgcccatttct 14029
to top
>emb|Z74409.1|HSU197H3 Human DNA sequence from clone LL0XNC01-197H3 on chromosome X, complete
             sequence
          Length = 34182

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    gtctgtgaaacttaaattag 40
             ||||||||||||||||||||
Sbjct: 24975 gtctgtgaaacttaaattag 24994


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,821,794
Number of Sequences: 3902068
Number of extensions: 4821794
Number of successful extensions: 99541
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98871
Number of HSP's gapped (non-prelim): 664
length of query: 646
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 623
effective length of database: 17,143,297,704
effective search space: 10680274469592
effective search space used: 10680274469592
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top