Clone Information

BLAST Search Result

Clone Name	rbags5m23
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RL3_ORYSA (P35684) 60S ribosomal protein L3	311	8e-85
2	RL3B_ARATH (P22738) 60S ribosomal protein L3	292	7e-79
3	RL3A_ARATH (P17094) 60S ribosomal protein L3	286	3e-77
4	RL3_DROME (O16797) 60S ribosomal protein L3	231	2e-60
5	RL3_TOXCA (P49149) 60S ribosomal protein L3	224	2e-58
6	RL3_ASHGO (Q759R7) 60S ribosomal protein L3	221	1e-57
7	RL3_MOUSE (P27659) 60S ribosomal protein L3 (J1 protein)	221	1e-57
8	RL3_CAEEL (P50880) 60S ribosomal protein L3	219	4e-57
9	RL3_RAT (P21531) 60S ribosomal protein L3 (L4)	219	4e-57
10	RL3_BOVIN (P39872) 60S ribosomal protein L3	219	4e-57
11	RL3_HUMAN (P39023) 60S ribosomal protein L3 (HIV-1 TAR RNA-bindi...	219	6e-57
12	RL3_CAEBR (Q9NBK4) 60S ribosomal protein L3	216	4e-56
13	RL3_DICDI (P34113) 60S ribosomal protein L3	216	5e-56
14	RL3L_BOVIN (Q3SZ10) 60S ribosomal protein L3-like	215	8e-56
15	RL3_KLULA (Q6CJR7) 60S ribosomal protein L3	214	2e-55
16	RL3_MACFA (Q4R5Q0) 60S ribosomal protein L3	214	2e-55
17	RL3_YEAST (P14126) 60S ribosomal protein L3 (YL1) (RP1) (Mainten...	213	3e-55
18	RL3_CANGA (Q6FTJ2) 60S ribosomal protein L3	212	9e-55
19	RL3L_HUMAN (Q92901) 60S ribosomal protein L3-like	212	9e-55
20	RL3B_SCHPO (P36584) 60S ribosomal protein L3-B	211	1e-54
21	RL3A_SCHPO (P40372) 60S ribosomal protein L3-A	211	1e-54
22	RL3_ASPFU (Q8NKF4) 60S ribosomal protein L3 (Allergen Asp f 23)	211	2e-54
23	RL3_DEBHA (Q6BXM5) 60S ribosomal protein L3	208	1e-53
24	RL3_NEUCR (P59671) 60S ribosomal protein L3	204	2e-52
25	RL3_ENCCU (Q8SQI3) 60S ribosomal protein L3	196	5e-50
26	RL3_PIG (Q29293) 60S ribosomal protein L3 (Fragment)	127	4e-29
27	RL3_PYRFU (Q8TZZ8) 50S ribosomal protein L3P	120	3e-27
28	RL3_PYRAB (Q9V1T5) 50S ribosomal protein L3P	118	2e-26
29	RL3_PYRHO (O59418) 50S ribosomal protein L3P	117	2e-26
30	RL3_PYRKO (Q5JDJ0) 50S ribosomal protein L3P	108	1e-23
31	RL3_METAC (Q8TRU7) 50S ribosomal protein L3P	100	5e-21
32	RL3_ARCFU (O28354) 50S ribosomal protein L3P	98	2e-20
33	RL3_METKA (Q8TY90) 50S ribosomal protein L3P	98	2e-20
34	RL3_METJA (P54014) 50S ribosomal protein L3P	97	4e-20
35	RL3_METMA (Q8PV50) 50S ribosomal protein L3P	97	5e-20
36	RL3_METTH (O26110) 50S ribosomal protein L3P	93	8e-19
37	RL3_METVA (Q9UWG2) 50S ribosomal protein L3P	92	1e-18
38	RL3_PYRAE (Q8ZW52) 50S ribosomal protein L3P	89	1e-17
39	RL3_THEVO (Q97BX7) 50S ribosomal protein L3P	87	6e-17
40	RL3_THEAC (Q9HIQ9) 50S ribosomal protein L3P	84	3e-16
41	RL3_HALSA (Q9HPD4) 50S ribosomal protein L3P	81	2e-15
42	RL3_HALMA (P20279) 50S ribosomal protein L3P (Hmal3) (Hl1)	78	3e-14
43	RL3_NANEQ (P60458) 50S ribosomal protein L3P	72	1e-12
44	RL3_SULTO (Q975I1) 50S ribosomal protein L3P	70	7e-12
45	RL3_AERPE (Q9YFM2) 50S ribosomal protein L3P	69	1e-11
46	RL3_SULSO (Q9UXA8) 50S ribosomal protein L3P	67	5e-11
47	RL3_SULAC (Q4JB40) 50S ribosomal protein L3P	62	1e-09
48	RUVB_LISMO (Q8Y6Z8) Holliday junction ATP-dependent DNA helicase...	39	0.010
49	RUVB_LISMF (Q71ZD8) Holliday junction ATP-dependent DNA helicase...	39	0.010
50	RUVB_LISIN (Q92BI2) Holliday junction ATP-dependent DNA helicase...	39	0.014
51	CY42_TRYBB (Q99396) Receptor-type adenylate cyclase GRESAG 4.2 (...	31	2.8
52	IPAC_SHIFL (P18012) Invasin ipaC (42 kDa antigen)	31	3.7
53	IPAC_SHIDY (Q03946) Invasin ipaC (42 kDa antigen)	31	3.7
54	RL3_MYCPU (Q98PY0) 50S ribosomal protein L3	31	3.7
55	HEM3_DESVH (Q72AV0) Porphobilinogen deaminase (EC 2.5.1.61) (PBG...	30	4.8
56	ICAM5_HUMAN (Q9UMF0) Intercellular adhesion molecule 5 precursor...	30	4.8
57	PHF12_MOUSE (Q5SPL2) PHD finger protein 12 (PHD factor 1) (Pf1)	30	4.8
58	RUVB_RHOBA (Q7UPG4) Holliday junction ATP-dependent DNA helicase...	30	4.8
59	BPA1_MOUSE (Q91ZU6) Bullous pemphigoid antigen 1, isoforms 1/2/3...	30	6.3
60	POLR_OYMV (P20127) RNA replicase polyprotein (EC 2.7.7.48)	30	6.3
61	PHF12_HUMAN (Q96QT6) PHD finger protein 12 (PHD factor 1) (Pf1)	30	8.2
62	RUVB_ENTFA (Q839T5) Holliday junction ATP-dependent DNA helicase...	30	8.2

>RL3_ORYSA (P35684) 60S ribosomal protein L3|
          Length = 388

 Score =  311 bits (798), Expect = 8e-85
 Identities = 148/155 (95%), Positives = 151/155 (97%)
 Frame = -3

Query: 652 TRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQ 473
           TRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGK GQ
Sbjct: 233 TRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKSGQ 292

Query: 472 ETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRL 293
           E+H A TEFDRTEKDITPMGGFPHYGVVK DYLMIKGCCVGPKKRVVTLRQSLLKQTSRL
Sbjct: 293 ESHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRL 352

Query: 292 ALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 188
           ALEEIKLKF+DTSSKFGHGRFQTTDEKQRF+GKLK
Sbjct: 353 ALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 387

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>RL3B_ARATH (P22738) 60S ribosomal protein L3|
          Length = 389

 Score =  292 bits (747), Expect = 7e-79
 Identities = 134/153 (87%), Positives = 145/153 (94%)
 Frame = -3

Query: 652 TRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQ 473
           TRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVY++GKVGQ
Sbjct: 233 TRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYRVGKVGQ 292

Query: 472 ETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRL 293
           ETH A TE+DRTEKDITPMGGFPHYG+VK DYLMIKGCCVGPKKRVVTLRQ+LLKQTSRL
Sbjct: 293 ETHSAMTEYDRTEKDITPMGGFPHYGIVKEDYLMIKGCCVGPKKRVVTLRQTLLKQTSRL 352

Query: 292 ALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGK 194
           A+EEIKLKF+D +S  GHGRFQT+ EK +FYG+
Sbjct: 353 AMEEIKLKFIDAASNGGHGRFQTSQEKAKFYGR 385

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>RL3A_ARATH (P17094) 60S ribosomal protein L3|
          Length = 388

 Score =  286 bits (733), Expect = 3e-77
 Identities = 132/154 (85%), Positives = 144/154 (93%)
 Frame = -3

Query: 652 TRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQ 473
           TRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTE+NKK+Y++GKVG 
Sbjct: 233 TRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRLGKVGT 292

Query: 472 ETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRL 293
           E H A TE+DRTEKD+TPMGGFPHYG+VK DYLMIKGCCVGPKKRVVTLRQSLL QTSRL
Sbjct: 293 EAHTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLTQTSRL 352

Query: 292 ALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKL 191
           ALEEIKLKF+DT+S FGHGRFQT+ EK RFY ++
Sbjct: 353 ALEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRV 386

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>RL3_DROME (O16797) 60S ribosomal protein L3|
          Length = 415

 Score =  231 bits (588), Expect = 2e-60
 Identities = 111/162 (68%), Positives = 129/162 (79%), Gaps = 7/162 (4%)
 Frame = -3

Query: 652 TRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQ 473
           +RW   +LPRKTH+GLRKVACIGAWHP+RVS TVARAGQ GYHHRTE+NKK+Y+IG  G 
Sbjct: 232 SRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIG-AGI 290

Query: 472 ETHD-------ASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSL 314
            T D       ASTE+D T+K ITPMGGFPHYG V  D++MIKGCC+G KKR++TLR+SL
Sbjct: 291 HTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSL 350

Query: 313 LKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 188
           LK T R ALE+IKLKF+DTSSK GHGRFQT  +K  F G LK
Sbjct: 351 LKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLK 392

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>RL3_TOXCA (P49149) 60S ribosomal protein L3|
          Length = 401

 Score =  224 bits (571), Expect = 2e-58
 Identities = 102/158 (64%), Positives = 127/158 (80%), Gaps = 3/158 (1%)
 Frame = -3

Query: 652 TRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGK--- 482
           +RW   +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE+NKK+Y++GK   
Sbjct: 232 SRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEVNKKIYRLGKSCL 291

Query: 481 VGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQT 302
             +   +  T++D TEK + PMGGFPHYG+V  D++MI+GCCVG KKR +TLR+SL+ QT
Sbjct: 292 TEEGKKNGGTDYDITEKSVNPMGGFPHYGLVNQDFVMIRGCCVGSKKRPITLRKSLIVQT 351

Query: 301 SRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 188
            R A E+I LK++DTSSKFGHGRFQT  EK+ F GKLK
Sbjct: 352 KRFAHEKINLKWIDTSSKFGHGRFQTHAEKRAFMGKLK 389

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>RL3_ASHGO (Q759R7) 60S ribosomal protein L3|
          Length = 388

 Score =  221 bits (563), Expect = 1e-57
 Identities = 107/154 (69%), Positives = 123/154 (79%)
 Frame = -3

Query: 649 RWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQE 470
           RWG  +LPRKTHRGLRKVACIGAWHPA V +TVARAGQNGYHHRT +N KVY+IGK G E
Sbjct: 233 RWGTKKLPRKTHRGLRKVACIGAWHPAHVMWTVARAGQNGYHHRTSINHKVYRIGKGGDE 292

Query: 469 THDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLA 290
            + A+TEFDRT+K ITPMGGF HYG V  D++M+KG   G +KRVVTLR+SL   TSR A
Sbjct: 293 GN-AATEFDRTKKTITPMGGFVHYGAVNNDFVMVKGSIPGTRKRVVTLRKSLYTSTSRRA 351

Query: 289 LEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 188
           LEE+ LK++DT+SKFG GRFQT  EK  F G LK
Sbjct: 352 LEEVNLKWIDTASKFGKGRFQTPAEKHAFMGTLK 385

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>RL3_MOUSE (P27659) 60S ribosomal protein L3 (J1 protein)|
          Length = 402

 Score =  221 bits (563), Expect = 1e-57
 Identities = 107/161 (66%), Positives = 131/161 (81%), Gaps = 6/161 (3%)
 Frame = -3

Query: 652 TRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG---- 485
           +RW   +LPRKTHRGLRKVACIGAWHPARV++TVARAGQ GYHHRTE+NKK+YKIG    
Sbjct: 232 SRWHTKKLPRKTHRGLRKVACIGAWHPARVAFTVARAGQKGYHHRTEINKKIYKIGQGYL 291

Query: 484 -KVGQET-HDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLL 311
            K G+   ++AST++D ++K I P+GGF HYG V  D++M+KGC VG KKRV+TLR+SLL
Sbjct: 292 IKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLL 351

Query: 310 KQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 188
            QT R ALE+I LKF+DT+SKFGHGRFQT +EK+ F G LK
Sbjct: 352 VQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 392

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>RL3_CAEEL (P50880) 60S ribosomal protein L3|
          Length = 401

 Score =  219 bits (559), Expect = 4e-57
 Identities = 101/158 (63%), Positives = 129/158 (81%), Gaps = 3/158 (1%)
 Frame = -3

Query: 652 TRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVG- 476
           +RW   +LPRKTH+GLRKVACIGAWHP+RV++TVARAGQ G+HHRT +N K+Y+IGK   
Sbjct: 233 SRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSAL 292

Query: 475 --QETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQT 302
             +  ++ STEFD T+K ITPMGGFP YG+V  DY+M++G  +GPKKR++TLR+SL+ QT
Sbjct: 293 TEEGKNNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQT 352

Query: 301 SRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 188
            R+A E+I LK++DTSSK GHGRFQTT EK+ F GKLK
Sbjct: 353 KRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLK 390

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>RL3_RAT (P21531) 60S ribosomal protein L3 (L4)|
          Length = 402

 Score =  219 bits (559), Expect = 4e-57
 Identities = 106/161 (65%), Positives = 131/161 (81%), Gaps = 6/161 (3%)
 Frame = -3

Query: 652 TRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG---- 485
           +RW   +LPRKTHRGLRKVACIGAWHPARV+++VARAGQ GYHHRTE+NKK+YKIG    
Sbjct: 232 SRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYL 291

Query: 484 -KVGQET-HDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLL 311
            K G+   ++AST++D ++K I P+GGF HYG V  D++M+KGC VG KKRV+TLR+SLL
Sbjct: 292 IKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLL 351

Query: 310 KQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 188
            QT R ALE+I LKF+DT+SKFGHGRFQT +EK+ F G LK
Sbjct: 352 VQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 392

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>RL3_BOVIN (P39872) 60S ribosomal protein L3|
          Length = 402

 Score =  219 bits (559), Expect = 4e-57
 Identities = 106/161 (65%), Positives = 131/161 (81%), Gaps = 6/161 (3%)
 Frame = -3

Query: 652 TRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG---- 485
           +RW   +LPRKTHRGLRKVACIGAWHPARV+++VARAGQ GYHHRTE+NKK+YKIG    
Sbjct: 232 SRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYL 291

Query: 484 -KVGQET-HDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLL 311
            K G+   ++AST++D ++K I P+GGF HYG V  D++M+KGC VG KKRV+TLR+SLL
Sbjct: 292 IKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLL 351

Query: 310 KQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 188
            QT R ALE+I LKF+DT+SKFGHGRFQT +EK+ F G LK
Sbjct: 352 VQTKRRALEKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLK 392

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>RL3_HUMAN (P39023) 60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein B)|
           (TARBP-B)
          Length = 402

 Score =  219 bits (558), Expect = 6e-57
 Identities = 106/161 (65%), Positives = 131/161 (81%), Gaps = 6/161 (3%)
 Frame = -3

Query: 652 TRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG---- 485
           +RW   +LPRKTHRGLRKVACIGAWHPARV+++VARAGQ GYHHRTE+NKK+YKIG    
Sbjct: 232 SRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYL 291

Query: 484 -KVGQET-HDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLL 311
            K G+   ++AST++D ++K I P+GGF HYG V  D++M+KGC VG KKRV+TLR+SLL
Sbjct: 292 IKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLL 351

Query: 310 KQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 188
            QT R ALE+I LKF+DT+SKFGHGRFQT +EK+ F G LK
Sbjct: 352 VQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 392

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>RL3_CAEBR (Q9NBK4) 60S ribosomal protein L3|
          Length = 401

 Score =  216 bits (551), Expect = 4e-56
 Identities = 100/158 (63%), Positives = 128/158 (81%), Gaps = 3/158 (1%)
 Frame = -3

Query: 652 TRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVG- 476
           +RW   +LPRKTH+GLRKVACIGAWHP+RV++TVARAGQ G+HHRT +N K+Y+IGK   
Sbjct: 233 SRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSAL 292

Query: 475 --QETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQT 302
             +  ++ STEFD T+K I PMGGFP YG+V  DY+M++G  +GPKKR++TLR+SL+ QT
Sbjct: 293 TEEGKNNGSTEFDLTQKTINPMGGFPRYGLVNQDYVMLRGAILGPKKRLITLRKSLITQT 352

Query: 301 SRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 188
            R+A E+I LK++DTSSK GHGRFQTT EK+ F GKLK
Sbjct: 353 KRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLK 390

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>RL3_DICDI (P34113) 60S ribosomal protein L3|
          Length = 397

 Score =  216 bits (550), Expect = 5e-56
 Identities = 100/158 (63%), Positives = 123/158 (77%), Gaps = 4/158 (2%)
 Frame = -3

Query: 649 RWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKV--- 479
           RWGV +LPRKTH+GLRKVACIGAWHP+RVS TV RAGQ GYHHR E NKK+Y+IG+    
Sbjct: 234 RWGVRKLPRKTHKGLRKVACIGAWHPSRVSTTVPRAGQLGYHHRVERNKKIYRIGQAQPE 293

Query: 478 -GQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQT 302
            G++     TEFD TEK I PMGGF HYG+VK ++LM+KGC  GP+KR +TLR+S+  QT
Sbjct: 294 DGKQISTGKTEFDLTEKTINPMGGFAHYGMVKHEFLMLKGCVAGPRKRALTLRKSITTQT 353

Query: 301 SRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 188
            R ALE+I LKF+DTSSKFGHG  QT ++K +++G  K
Sbjct: 354 GRAALEKITLKFIDTSSKFGHGLHQTAEDKTKYFGVKK 391

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>RL3L_BOVIN (Q3SZ10) 60S ribosomal protein L3-like|
          Length = 406

 Score =  215 bits (548), Expect = 8e-56
 Identities = 103/162 (63%), Positives = 124/162 (76%), Gaps = 7/162 (4%)
 Frame = -3

Query: 652 TRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQ 473
           +RW   +LPRKTH+GLRKVACIGAWHPARV  ++ARAGQ GYHHRTE+NKK+Y+IG+ G 
Sbjct: 232 SRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRIGR-GL 290

Query: 472 ETHD-------ASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSL 314
              D       AST +D T+K ITP+GGFPHYG V  D++M+KGC  G KKRV+TLR+SL
Sbjct: 291 HMEDGKVVKNNASTSYDVTDKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSL 350

Query: 313 LKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 188
           L   SR ALE I+LKF+DT+SKFGHGRFQT  EK+ F G  K
Sbjct: 351 LVHHSRQALENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQK 392

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>RL3_KLULA (Q6CJR7) 60S ribosomal protein L3|
          Length = 387

 Score =  214 bits (544), Expect = 2e-55
 Identities = 101/154 (65%), Positives = 122/154 (79%)
 Frame = -3

Query: 649 RWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQE 470
           RWG  +LPRKTHRGLRKVACIGAWHPA V ++VARAGQ GYHHRT +N KVY++GK G +
Sbjct: 232 RWGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHHRTSINHKVYRVGK-GDD 290

Query: 469 THDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLA 290
             +A+TEFDRT+K ITPMGGF HYG +  D++++KG   G +KRVVTLR+SL   TSR A
Sbjct: 291 EANAATEFDRTKKTITPMGGFVHYGAINNDFVILKGSIPGTRKRVVTLRKSLYTNTSRKA 350

Query: 289 LEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 188
           LEE+ LK++DT+SKFG GRFQT  EK  F G LK
Sbjct: 351 LEEVTLKWIDTASKFGKGRFQTPAEKHAFLGTLK 384

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>RL3_MACFA (Q4R5Q0) 60S ribosomal protein L3|
          Length = 402

 Score =  214 bits (544), Expect = 2e-55
 Identities = 105/161 (65%), Positives = 130/161 (80%), Gaps = 6/161 (3%)
 Frame = -3

Query: 652 TRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG---- 485
           +RW   +LPRKTHRGLRKVACIGA HPARV+++VARAGQ GYHHRTE+NKK+YKIG    
Sbjct: 232 SRWHTKKLPRKTHRGLRKVACIGARHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYL 291

Query: 484 -KVGQET-HDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLL 311
            K G+   ++AST++D ++K I P+GGF HYG V  D++M+KGC VG KKRV+TLR+SLL
Sbjct: 292 IKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLL 351

Query: 310 KQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 188
            QT R ALE+I LKF+DT+SKFGHGRFQT +EK+ F G LK
Sbjct: 352 VQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 392

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>RL3_YEAST (P14126) 60S ribosomal protein L3 (YL1) (RP1) (Maintenance of|
           killer protein 8) (Trichodermin resistance protein)
          Length = 386

 Score =  213 bits (543), Expect = 3e-55
 Identities = 99/154 (64%), Positives = 121/154 (78%)
 Frame = -3

Query: 649 RWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQE 470
           RWG  +LPRKTHRGLRKVACIGAWHPA V ++VARAGQ GYH RT +N K+Y++GK G +
Sbjct: 231 RWGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHKIYRVGK-GDD 289

Query: 469 THDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLA 290
             + +T FDRT+K ITPMGGF HYG +K D++M+KGC  G +KR+VTLR+SL   TSR A
Sbjct: 290 EANGATSFDRTKKTITPMGGFVHYGEIKNDFIMVKGCIPGNRKRIVTLRKSLYTNTSRKA 349

Query: 289 LEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 188
           LEE+ LK++DT+SKFG GRFQT  EK  F G LK
Sbjct: 350 LEEVSLKWIDTASKFGKGRFQTPAEKHAFMGTLK 383

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>RL3_CANGA (Q6FTJ2) 60S ribosomal protein L3|
          Length = 387

 Score =  212 bits (539), Expect = 9e-55
 Identities = 101/154 (65%), Positives = 121/154 (78%)
 Frame = -3

Query: 649 RWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQE 470
           RWG  +LPRKTHRGLRKVACIGAWHPA V ++VARAGQ GYHHRT +N K+Y+IGK G +
Sbjct: 232 RWGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHHRTSINHKIYRIGK-GDD 290

Query: 469 THDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLA 290
             +A+T FDRT+K I PMGGF HYG+V  D++M+KG   G KKRVVTLR+SL   TSR A
Sbjct: 291 EGNAATNFDRTKKTINPMGGFVHYGMVNNDFVMVKGSIPGCKKRVVTLRKSLYTNTSRKA 350

Query: 289 LEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 188
           +EE+ LK++DT+SKFG GRFQT  EK  F G LK
Sbjct: 351 VEEVTLKWIDTASKFGKGRFQTPAEKHAFMGTLK 384

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>RL3L_HUMAN (Q92901) 60S ribosomal protein L3-like|
          Length = 406

 Score =  212 bits (539), Expect = 9e-55
 Identities = 101/162 (62%), Positives = 123/162 (75%), Gaps = 7/162 (4%)
 Frame = -3

Query: 652 TRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQ 473
           +RW   +LPRKTH+GLRKVACIGAWHPARV  ++ARAGQ GYHHRTE+NKK+++IG+ G 
Sbjct: 232 SRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRIGR-GP 290

Query: 472 ETHD-------ASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSL 314
              D       AST +D T K ITP+GGFPHYG V  D++M+KGC  G KKRV+TLR+SL
Sbjct: 291 HMEDGKLVKNNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSL 350

Query: 313 LKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 188
           L   SR A+E I+LKF+DT+SKFGHGRFQT  EK+ F G  K
Sbjct: 351 LVHHSRQAVENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQK 392

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>RL3B_SCHPO (P36584) 60S ribosomal protein L3-B|
          Length = 387

 Score =  211 bits (538), Expect = 1e-54
 Identities = 101/154 (65%), Positives = 121/154 (78%)
 Frame = -3

Query: 649 RWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQE 470
           RWG  RLPRKTHRGLRKVACIGAWHPA V +TVARAG  GY HRT++N K+Y+IG  G +
Sbjct: 231 RWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIG-AGDD 289

Query: 469 THDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLA 290
             +AST+FD TEK ITPMGGF  YGVV+ D++M+ G   GP KRV+TLR+SLL  TSR A
Sbjct: 290 AKNASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKA 349

Query: 289 LEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 188
           LE + LK++DT+SKFGHGRFQT  E ++F G LK
Sbjct: 350 LEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLK 383

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>RL3A_SCHPO (P40372) 60S ribosomal protein L3-A|
          Length = 387

 Score =  211 bits (538), Expect = 1e-54
 Identities = 101/154 (65%), Positives = 121/154 (78%)
 Frame = -3

Query: 649 RWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQE 470
           RWG  RLPRKTHRGLRKVACIGAWHPA V +TVARAG  GY HRT++N K+Y+IG  G +
Sbjct: 231 RWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIG-AGDD 289

Query: 469 THDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLA 290
             +AST+FD TEK ITPMGGF  YGVV+ D++M+ G   GP KRV+TLR+SLL  TSR A
Sbjct: 290 AKNASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKA 349

Query: 289 LEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 188
           LE + LK++DT+SKFGHGRFQT  E ++F G LK
Sbjct: 350 LEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLK 383

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>RL3_ASPFU (Q8NKF4) 60S ribosomal protein L3 (Allergen Asp f 23)|
          Length = 392

 Score =  211 bits (537), Expect = 2e-54
 Identities = 100/155 (64%), Positives = 124/155 (80%)
 Frame = -3

Query: 652 TRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQ 473
           +RWG  +LPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT  N KV++IGK G 
Sbjct: 232 SRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSCNHKVFRIGK-GS 290

Query: 472 ETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRL 293
           +  +AST+FD ++K ITPMGGF  YG VK DY+M+KG   G KKRV+TLR++L  QTSR 
Sbjct: 291 DEGNASTDFDISKKQITPMGGFVRYGEVKNDYIMVKGSVPGVKKRVMTLRKTLYPQTSRR 350

Query: 292 ALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 188
           A E+++LK++DTSSKFGHG FQT +EK+ F G LK
Sbjct: 351 ATEKVELKWIDTSSKFGHGAFQTPEEKRAFMGTLK 385

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>RL3_DEBHA (Q6BXM5) 60S ribosomal protein L3|
          Length = 389

 Score =  208 bits (530), Expect = 1e-53
 Identities = 99/154 (64%), Positives = 118/154 (76%)
 Frame = -3

Query: 649 RWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQE 470
           RWG  +LPRKTHRGLRKVACIGAWHPA V +TVARAGQNG+HHRT +N KVY++G  G E
Sbjct: 232 RWGTKKLPRKTHRGLRKVACIGAWHPANVQWTVARAGQNGFHHRTSINHKVYRVGSAGDE 291

Query: 469 THDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLA 290
           +  A TEFDRT+K I PMGGF  YG VK D++++KG   G KKR+VT+R+SL   TSR A
Sbjct: 292 SSGA-TEFDRTKKTINPMGGFVRYGNVKNDFMLLKGSIPGVKKRIVTIRKSLYVDTSRRA 350

Query: 289 LEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 188
            E + LK++DT+SKFG GRFQT  EK  F G LK
Sbjct: 351 TENVNLKWIDTASKFGKGRFQTPAEKHAFLGTLK 384

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>RL3_NEUCR (P59671) 60S ribosomal protein L3|
          Length = 392

 Score =  204 bits (518), Expect = 2e-52
 Identities = 96/154 (62%), Positives = 120/154 (77%)
 Frame = -3

Query: 649 RWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQE 470
           RWG  +LPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT +N K+Y+IGK G  
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQAGYHHRTSVNHKIYRIGK-GDA 291

Query: 469 THDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLA 290
              A+TE D T+K ITPMGGF  YG +  D++M+KG   G KKRV+TLR+S+   TSR A
Sbjct: 292 EDSAATEVDVTKKKITPMGGFVRYGEINNDFVMVKGSVPGVKKRVMTLRKSMFVHTSRKA 351

Query: 289 LEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 188
           LE+++LK++DTSS+FGHG FQT  EK++F G LK
Sbjct: 352 LEKVELKWIDTSSEFGHGAFQTPAEKKQFQGTLK 385

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>RL3_ENCCU (Q8SQI3) 60S ribosomal protein L3|
          Length = 383

 Score =  196 bits (498), Expect = 5e-50
 Identities = 96/154 (62%), Positives = 120/154 (77%)
 Frame = -3

Query: 649 RWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQE 470
           R+GV + PRK+ +G+RKVACIGAWHP+RV Y++ARAGQ G+H RTE NK+VY I   G  
Sbjct: 228 RFGVRKQPRKSRKGIRKVACIGAWHPSRVMYSIARAGQMGFHRRTEKNKRVYMI---GNG 284

Query: 469 THDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLA 290
           + +  TEFD TEK I+PMGGFPHYG V+ D++M+KG  VG +KRVVTLR+SLL+Q    A
Sbjct: 285 SSNIKTEFDLTEKPISPMGGFPHYGEVRNDFIMVKGAVVGARKRVVTLRKSLLRQR---A 341

Query: 289 LEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 188
            EE+ +KFVDTSSK GHGRFQT+ EK+ FYG  K
Sbjct: 342 GEELVIKFVDTSSKIGHGRFQTSAEKKAFYGARK 375

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>RL3_PIG (Q29293) 60S ribosomal protein L3 (Fragment)|
          Length = 130

 Score =  127 bits (318), Expect = 4e-29
 Identities = 59/101 (58%), Positives = 77/101 (76%), Gaps = 6/101 (5%)
 Frame = -3

Query: 652 TRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG---- 485
           +RW   +LPRKTHRGLRKVACIGAWHPAR +++VARAGQ GYHHRTE+NKK+YKIG    
Sbjct: 30  SRWHTKKLPRKTHRGLRKVACIGAWHPARXAFSVARAGQKGYHHRTEINKKIYKIGQGYL 89

Query: 484 -KVGQ-ETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMI 368
            K G+   ++  T++D ++K I P+G F HYG V  D++M+
Sbjct: 90  IKDGKLIKNNXXTDYDLSDKSINPLGRFVHYGEVTNDFVML 130

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>RL3_PYRFU (Q8TZZ8) 50S ribosomal protein L3P|
          Length = 365

 Score =  120 bits (302), Expect = 3e-27
 Identities = 57/134 (42%), Positives = 84/134 (62%)
 Frame = -3

Query: 649 RWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQE 470
           RWG+     K  +G RKV  IG WHPARV +TV  AGQ G+HHRTE+NK++  IG+ G+ 
Sbjct: 236 RWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENGKL 295

Query: 469 THDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLA 290
             D +TE      +ITP GGFPHYG+V++D++MI G   G  KR++ +R ++     +  
Sbjct: 296 KLDENTEI-----EITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPP 350

Query: 289 LEEIKLKFVDTSSK 248
           ++  ++ +V   SK
Sbjct: 351 VQRPQITYVSVESK 364

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>RL3_PYRAB (Q9V1T5) 50S ribosomal protein L3P|
          Length = 361

 Score =  118 bits (295), Expect = 2e-26
 Identities = 56/134 (41%), Positives = 82/134 (61%)
 Frame = -3

Query: 649 RWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQE 470
           RWG+     K  +G RKV  IG WHPARV +TV  AGQ G+HHRTE+NK++  IG+ G+ 
Sbjct: 233 RWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENGK- 291

Query: 469 THDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLA 290
                   D  E +ITP GGFPHYG+V++D++MI G   G  KR++ +R ++     +  
Sbjct: 292 -----LVIDGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPP 346

Query: 289 LEEIKLKFVDTSSK 248
           ++  ++ +V   SK
Sbjct: 347 VQRPQITYVSVESK 360

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>RL3_PYRHO (O59418) 50S ribosomal protein L3P|
          Length = 362

 Score =  117 bits (294), Expect = 2e-26
 Identities = 56/134 (41%), Positives = 81/134 (60%)
 Frame = -3

Query: 649 RWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQE 470
           RWG+     K  +G RKV  IG WHPARV +TV  AGQ G+HHRTE+NK++  IG+ G+ 
Sbjct: 234 RWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENGK- 292

Query: 469 THDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLA 290
                   D  E +ITP GGFPHYG+V+ D++MI G   G  KR++ +R ++     +  
Sbjct: 293 -----LVIDGNEIEITPKGGFPHYGIVRGDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPP 347

Query: 289 LEEIKLKFVDTSSK 248
           ++  ++ +V   SK
Sbjct: 348 VQRPQITYVSVESK 361

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>RL3_PYRKO (Q5JDJ0) 50S ribosomal protein L3P|
          Length = 346

 Score =  108 bits (271), Expect = 1e-23
 Identities = 56/136 (41%), Positives = 82/136 (60%), Gaps = 2/136 (1%)
 Frame = -3

Query: 649 RWGVTRLPRKTHRGL--RKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVG 476
           RWGV     K  R    R +  +G WHPARV +TV +AGQ G+HHRTE NK++  IG+ G
Sbjct: 216 RWGVKVQFHKAQRAGKGRHIGNLGPWHPARVMWTVPQAGQMGFHHRTEFNKRLIAIGENG 275

Query: 475 QETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSR 296
           +   D +      E +ITP GGFPHYG+V++D+LMI+G   G  KR++ +R ++     +
Sbjct: 276 KLVLDGN------EIEITPKGGFPHYGIVRSDFLMIEGTIPGSFKRIIRVRPAIRPPKKK 329

Query: 295 LALEEIKLKFVDTSSK 248
             +E  ++ +V   SK
Sbjct: 330 PPVERPQITYVSRESK 345

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>RL3_METAC (Q8TRU7) 50S ribosomal protein L3P|
          Length = 337

 Score =  100 bits (248), Expect = 5e-21
 Identities = 54/138 (39%), Positives = 80/138 (57%), Gaps = 2/138 (1%)
 Frame = -3

Query: 649 RWGVTRLPRKTHR--GLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVG 476
           RWG+  +  K  R   LR+V  +GA++P+RVS+ V + GQ GYH RTE NK++ KIG  G
Sbjct: 216 RWGIQLMKGKHSRQGSLRQVGTLGAFNPSRVSWRVPQMGQMGYHQRTEFNKRILKIGSDG 275

Query: 475 QETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSR 296
           +E              +TP GGF +YG+V+ DY++IKG   GP KR++ LR  +  +  +
Sbjct: 276 EE--------------VTPEGGFINYGLVRGDYILIKGSVPGPSKRLIRLRDPI--RAKK 319

Query: 295 LALEEIKLKFVDTSSKFG 242
             L E  + ++   SK G
Sbjct: 320 ADLGEPNILYISRESKQG 337

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>RL3_ARCFU (O28354) 50S ribosomal protein L3P|
          Length = 331

 Score = 97.8 bits (242), Expect = 2e-20
 Identities = 52/138 (37%), Positives = 79/138 (57%), Gaps = 2/138 (1%)
 Frame = -3

Query: 649 RWGVTRLPRKTHRGL--RKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVG 476
           RWGV  L  K  R    R+V  +G W+P  V +TV +AGQ G+H RTE NK++ KIG+ G
Sbjct: 209 RWGVITLDAKHARSSKHRRVGNLGPWNPHHVRWTVPQAGQMGFHQRTEYNKRLIKIGENG 268

Query: 475 QETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSR 296
           +E              ITP GGF HYGV++  Y+++ G   GP KR++ +R ++  +  +
Sbjct: 269 EE--------------ITPKGGFLHYGVIRTQYVLVTGSVPGPVKRLIRMRDAI--RPPK 312

Query: 295 LALEEIKLKFVDTSSKFG 242
              + + + +V T+SK G
Sbjct: 313 AHFDGVNIVYVSTTSKQG 330

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>RL3_METKA (Q8TY90) 50S ribosomal protein L3P|
          Length = 361

 Score = 97.8 bits (242), Expect = 2e-20
 Identities = 53/114 (46%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
 Frame = -3

Query: 649 RWGVTRLPRKTHRGL--RKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVG 476
           RWGVT   RKT R    R +  IG   P+RV +TV  AGQ GYH RTE NK++ KIG+ G
Sbjct: 219 RWGVTIQDRKTQRKQKGRHIGSIGPITPSRVRWTVPMAGQVGYHQRTEHNKRILKIGEDG 278

Query: 475 QETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSL 314
           +E              +TP GGF +YGVV+ DY+MI G   GPKKR++ +R ++
Sbjct: 279 EE--------------VTPRGGFVNYGVVRGDYIMIHGTVPGPKKRLIRVRPAV 318

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>RL3_METJA (P54014) 50S ribosomal protein L3P|
          Length = 335

 Score = 97.1 bits (240), Expect = 4e-20
 Identities = 54/138 (39%), Positives = 78/138 (56%), Gaps = 2/138 (1%)
 Frame = -3

Query: 649 RWGVT-RLPRKTHRGL-RKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVG 476
           RWGV  +  +   +G+ R V  IG W P  V ++V   GQ GYH RTE NK++ KIG  G
Sbjct: 213 RWGVKIQFGKHARKGVGRHVGSIGPWQPKMVMWSVPMPGQMGYHQRTEYNKRILKIGNNG 272

Query: 475 QETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSR 296
            E              ITP GGF HYGV++ +Y+++KG   GP KR++ LR+++  Q   
Sbjct: 273 DE--------------ITPKGGFLHYGVIRNNYVVLKGSVQGPAKRLIVLRRAIRPQEPL 318

Query: 295 LALEEIKLKFVDTSSKFG 242
           + + EI   ++ T+SK G
Sbjct: 319 IKVPEI--TYISTTSKQG 334

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>RL3_METMA (Q8PV50) 50S ribosomal protein L3P|
          Length = 337

 Score = 96.7 bits (239), Expect = 5e-20
 Identities = 52/138 (37%), Positives = 79/138 (57%), Gaps = 2/138 (1%)
 Frame = -3

Query: 649 RWGVTRLPRKTHR--GLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVG 476
           RWG+     K  R   LR++  +G+++P+RVS+ V + GQ GYH RTE NK++ KIG  G
Sbjct: 216 RWGIQLQKGKHSRQGSLRQIGTLGSFNPSRVSWRVPQMGQMGYHQRTEFNKRILKIGSDG 275

Query: 475 QETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSR 296
           +E              +TP GGF +YG+V+ DY++IKG   GP KR++ LR  +  +  +
Sbjct: 276 EE--------------VTPEGGFINYGLVRGDYVLIKGSVPGPSKRLIRLRDPI--RAKK 319

Query: 295 LALEEIKLKFVDTSSKFG 242
             L E  + ++   SK G
Sbjct: 320 ADLGEPNILYISRESKQG 337

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>RL3_METTH (O26110) 50S ribosomal protein L3P|
          Length = 337

 Score = 92.8 bits (229), Expect = 8e-19
 Identities = 54/139 (38%), Positives = 78/139 (56%), Gaps = 3/139 (2%)
 Frame = -3

Query: 649 RWGVTRLPRKTHRGL--RKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVG 476
           RWG+     K  R    R +  +G W P+R  +TV +AGQ GYH RTE NK++ KIG   
Sbjct: 213 RWGIRIQYGKAARSSKGRHIGSLGPWTPSRTMWTVPQAGQMGYHRRTEYNKQILKIG--- 269

Query: 475 QETHDASTEFDRTEKD-ITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTS 299
                     D +E D + P GGF  YG+V+ DY+MIKG   GP KR+V LR+++  + +
Sbjct: 270 ----------DASEADLVNPDGGFVRYGLVRNDYVMIKGSVPGPTKRLVVLRKAI--RAA 317

Query: 298 RLALEEIKLKFVDTSSKFG 242
               E  ++ ++ T+SK G
Sbjct: 318 GKQEEAPQINYISTASKQG 336

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>RL3_METVA (Q9UWG2) 50S ribosomal protein L3P|
          Length = 334

 Score = 92.4 bits (228), Expect = 1e-18
 Identities = 53/139 (38%), Positives = 75/139 (53%), Gaps = 2/139 (1%)
 Frame = -3

Query: 649 RWGVT-RLPRKTHRGL-RKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVG 476
           RWGV  +  +   +G+ R+   IG W P RV +TV  AGQ G+H RTE NK++ K+G  G
Sbjct: 212 RWGVKIQFGKHQRKGVGRQTGSIGPWRPKRVMWTVPLAGQMGFHQRTEYNKRILKLGSEG 271

Query: 475 QETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSR 296
            E              ITP GGF +YG VK  Y+++KG   GP KR+V LR ++     +
Sbjct: 272 AE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGAVRPAEDK 317

Query: 295 LALEEIKLKFVDTSSKFGH 239
             L E+   ++   SK G+
Sbjct: 318 FGLPEV--TYISKESKQGN 334

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>RL3_PYRAE (Q8ZW52) 50S ribosomal protein L3P|
          Length = 338

 Score = 88.6 bits (218), Expect = 1e-17
 Identities = 52/111 (46%), Positives = 65/111 (58%), Gaps = 2/111 (1%)
 Frame = -3

Query: 649 RWGVTRLPR--KTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVG 476
           R+GVT LPR  K  +G R+   IG   PA V +T  R GQ G+H RTE NK++ KIG+ G
Sbjct: 218 RFGVTILPRWHKHRKGHRRTGTIGPQAPA-VMFTQPRPGQMGFHQRTEYNKRLLKIGENG 276

Query: 475 QETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLR 323
            E              ITP  GFPHYGVVK  Y++I+G   G +KR+V LR
Sbjct: 277 AE--------------ITPKSGFPHYGVVKGPYILIQGSVPGARKRLVVLR 313

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>RL3_THEVO (Q97BX7) 50S ribosomal protein L3P|
          Length = 331

 Score = 86.7 bits (213), Expect = 6e-17
 Identities = 51/136 (37%), Positives = 71/136 (52%)
 Frame = -3

Query: 649 RWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQE 470
           R+GV  LPRK  +  R +  +G WHP  V  TV +AGQ GY  RT  N +V K  K    
Sbjct: 209 RFGVKLLPRKNRKHRRMIGTLGPWHPDWVRNTVPQAGQMGYQQRTISNVRVLKYSK---- 264

Query: 469 THDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLA 290
             DA T        I   GGF HYG+VK DY+++ G   GP KR++ +R    ++     
Sbjct: 265 GEDADT--------INVRGGFLHYGLVKNDYVLLFGSVPGPAKRLIKMRDPARQKVP--D 314

Query: 289 LEEIKLKFVDTSSKFG 242
           ++ +KL ++   SK G
Sbjct: 315 IDNVKLDYISLESKQG 330

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>RL3_THEAC (Q9HIQ9) 50S ribosomal protein L3P|
          Length = 331

 Score = 84.3 bits (207), Expect = 3e-16
 Identities = 50/136 (36%), Positives = 70/136 (51%)
 Frame = -3

Query: 649 RWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQE 470
           R+GV  LPRK  +  R +  +G WHP  V  TV +AGQ G+  RT  N +V K G     
Sbjct: 209 RFGVKLLPRKNRKHRRMIGTLGPWHPDWVRNTVPQAGQMGFQQRTISNVRVIKYGN---- 264

Query: 469 THDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLA 290
                 E D     I   GGF HYG VK DY+++ G   G  KR++ +R    ++     
Sbjct: 265 ----KEEVD----SINVRGGFLHYGFVKNDYVLLFGSIPGASKRLIKMRDPARQKVP--D 314

Query: 289 LEEIKLKFVDTSSKFG 242
           +EE+KL+++   SK G
Sbjct: 315 IEEVKLEYISLESKQG 330

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>RL3_HALSA (Q9HPD4) 50S ribosomal protein L3P|
          Length = 334

 Score = 81.3 bits (199), Expect = 2e-15
 Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 2/138 (1%)
 Frame = -3

Query: 649 RWGVTRLPRKTHRG--LRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVG 476
           RWGV +   K  R    R++  +G W+P+RV  TV + GQ GYH RTE+NK++  I   G
Sbjct: 214 RWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIND-G 272

Query: 475 QETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSR 296
            E               TP GGFP+YG V   Y ++KG   GP++R+V  R ++    S 
Sbjct: 273 DEP--------------TPDGGFPNYGEVDGPYTLVKGSVPGPEQRLVRFRPAVRPNESP 318

Query: 295 LALEEIKLKFVDTSSKFG 242
               E+  ++V T+S  G
Sbjct: 319 RLDPEV--RYVSTASNQG 334

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>RL3_HALMA (P20279) 50S ribosomal protein L3P (Hmal3) (Hl1)|
          Length = 337

 Score = 77.8 bits (190), Expect = 3e-14
 Identities = 43/114 (37%), Positives = 61/114 (53%), Gaps = 2/114 (1%)
 Frame = -3

Query: 649 RWGVTRLPRKTHRG--LRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVG 476
           RWGV +   K  R    R++  +G W+P+RV  TV + GQ GYH RTE+NK++  IG+  
Sbjct: 217 RWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEGD 276

Query: 475 QETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSL 314
           + T D               GGF +YG V   Y ++KG   GP KR+V  R ++
Sbjct: 277 EPTVD---------------GGFVNYGEVDGPYTLVKGSVPGPDKRLVRFRPAV 315

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>RL3_NANEQ (P60458) 50S ribosomal protein L3P|
          Length = 321

 Score = 72.0 bits (175), Expect = 1e-12
 Identities = 42/125 (33%), Positives = 64/125 (51%)
 Frame = -3

Query: 649 RWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQE 470
           R+ V R   K+ +G+RKV  IG+  P R+  TV   GQ GYH RTE NK + KIG     
Sbjct: 206 RFHVHRRQHKSEKGVRKVGAIGSRGPGRIFPTVPMPGQMGYHRRTEYNKLIIKIG----- 260

Query: 469 THDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLA 290
                       + +   GG+  YG V    +++KG   GP+KR++ LR+++     +  
Sbjct: 261 ------------EPLNVEGGWVRYGQVIGPTILLKGSVPGPRKRLIILREAIRPPRKQEK 308

Query: 289 LEEIK 275
           +E I+
Sbjct: 309 VEGIE 313

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>RL3_SULTO (Q975I1) 50S ribosomal protein L3P|
          Length = 343

 Score = 69.7 bits (169), Expect = 7e-12
 Identities = 51/138 (36%), Positives = 71/138 (51%), Gaps = 2/138 (1%)
 Frame = -3

Query: 649 RWGVTRLPR--KTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVG 476
           R+GV  LPR  K  +G RKV   G    +  SY V + GQ GYH RTE NK++ KI    
Sbjct: 224 RYGVVELPRWHKHRKGSRKVGARGPSF-STPSY-VPQPGQMGYHRRTEYNKRILKISDDP 281

Query: 475 QETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSR 296
            E              I P GGF +YG+V+  YL+I+G  +G KKR + LR  +  + S 
Sbjct: 282 NE--------------INPKGGFVNYGIVRNTYLIIEGSIIGAKKRPLFLRYPI--RPSW 325

Query: 295 LALEEIKLKFVDTSSKFG 242
           +     K+ +V+  S+ G
Sbjct: 326 IPQSAPKITYVNLYSQQG 343

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>RL3_AERPE (Q9YFM2) 50S ribosomal protein L3P|
          Length = 344

 Score = 68.9 bits (167), Expect = 1e-11
 Identities = 42/140 (30%), Positives = 70/140 (50%), Gaps = 4/140 (2%)
 Frame = -3

Query: 649 RWGVTRLPR--KTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVG 476
           RWGV  LPR  K  +G R++      H     +   +AGQ G+H RTE NK++  I   G
Sbjct: 220 RWGVKELPRWHKHRKGSRRIGARS--HGRSTFWETPQAGQTGFHRRTEYNKRILMIDDDG 277

Query: 475 QETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLL--KQT 302
            +              +TP GGF  YGVV++ ++M+ G   G  KR + +R ++   +  
Sbjct: 278 YK--------------VTPAGGFLRYGVVRSTFVMLSGSIPGTPKRPIVMRWAIRPPEWY 323

Query: 301 SRLALEEIKLKFVDTSSKFG 242
            +L + + ++ ++  +SK G
Sbjct: 324 LKLGVRKPEITYISLASKQG 343

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>RL3_SULSO (Q9UXA8) 50S ribosomal protein L3P|
          Length = 351

 Score = 67.0 bits (162), Expect = 5e-11
 Identities = 42/112 (37%), Positives = 59/112 (52%), Gaps = 2/112 (1%)
 Frame = -3

Query: 649 RWGVTRLPR--KTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVG 476
           R+ V  LPR  K  +G RK+   G       SYT  + GQ G+H RTE NK++ KIG   
Sbjct: 232 RYSVVELPRWHKHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIGD-- 287

Query: 475 QETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQ 320
                         K+I P GGF  YG+V+  Y++++G  +G KKR + LR+
Sbjct: 288 ------------EPKEINPAGGFVRYGIVRNTYVLLEGSILGSKKRPIFLRE 327

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>RL3_SULAC (Q4JB40) 50S ribosomal protein L3P|
          Length = 342

 Score = 62.0 bits (149), Expect = 1e-09
 Identities = 46/138 (33%), Positives = 69/138 (50%), Gaps = 2/138 (1%)
 Frame = -3

Query: 649 RWGVTRLPR--KTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVG 476
           R+ V   PR  K  +G RK+   G    +  SY V + GQ G+H RTE NK++ KIG   
Sbjct: 223 RYSVVEFPRWHKHRKGSRKIGARGP-SISTPSY-VPQPGQLGFHRRTEYNKRIIKIGD-- 278

Query: 475 QETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSR 296
                          +I P GG  +YG+VK  YL+I+G  +G +KR + LR  +    S 
Sbjct: 279 ------------NVNEINPAGGIVNYGLVKNTYLVIEGSVLGSRKRPLFLRYPIRPSWSP 326

Query: 295 LALEEIKLKFVDTSSKFG 242
            +    K+ +V+ +S+ G
Sbjct: 327 ESAP--KITYVNLASQQG 342

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>RUVB_LISMO (Q8Y6Z8) Holliday junction ATP-dependent DNA helicase ruvB (EC|
           3.6.1.-)
          Length = 335

 Score = 39.3 bits (90), Expect = 0.010
 Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 8/118 (6%)
 Frame = +2

Query: 131 VSHVRF---DKMTQLILRSSSSLELAIEPLLLVGGLETA-----VPKLGRGVDKLELDFL 286
           + H+ F   +++T+++LR+S+ L+  I+ L   G  E A      P++   + K   DF 
Sbjct: 177 IDHLEFYTEEQLTEIVLRTSNILDTKIDDL---GAREIARRSRGTPRIANRLLKRVRDFA 233

Query: 287 QCETRGLLQQGLAEGHHTLLWPDTASLDHQVVGLHHTIVREATHGSDVLLGPVELSRG 460
           Q    G + + LA+   TLL  D   LD     L HTI+ ++  G  V L  +  S G
Sbjct: 234 QVRGNGTVTEKLAKEALTLLQVDPRGLDTIDQKLLHTII-QSFRGGPVGLDTIAASIG 290

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>RUVB_LISMF (Q71ZD8) Holliday junction ATP-dependent DNA helicase ruvB (EC|
           3.6.1.-)
          Length = 335

 Score = 39.3 bits (90), Expect = 0.010
 Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 8/118 (6%)
 Frame = +2

Query: 131 VSHVRF---DKMTQLILRSSSSLELAIEPLLLVGGLETA-----VPKLGRGVDKLELDFL 286
           + H+ F   +++T+++LR+S+ L+  I+ L   G  E A      P++   + K   DF 
Sbjct: 177 IDHLEFYTEEQLTEIVLRTSNILDTKIDDL---GAREIARRSRGTPRIANRLLKRVRDFA 233

Query: 287 QCETRGLLQQGLAEGHHTLLWPDTASLDHQVVGLHHTIVREATHGSDVLLGPVELSRG 460
           Q    G + + LA+   TLL  D   LD     L HTI+ ++  G  V L  +  S G
Sbjct: 234 QVRGNGTVTEKLAKEALTLLQVDPRGLDTIDQKLLHTII-QSFRGGPVGLDTIAASIG 290

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>RUVB_LISIN (Q92BI2) Holliday junction ATP-dependent DNA helicase ruvB (EC|
           3.6.1.-)
          Length = 335

 Score = 38.9 bits (89), Expect = 0.014
 Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 8/118 (6%)
 Frame = +2

Query: 131 VSHVRF---DKMTQLILRSSSSLELAIEPLLLVGGLETA-----VPKLGRGVDKLELDFL 286
           + H+ F   +++T+++LR+S  L+  I+ L   G  E A      P++   + K   DF 
Sbjct: 177 IDHLEFYTEEQLTEIVLRTSGILDTKIDDL---GAREIARRSRGTPRIANRLLKRVRDFA 233

Query: 287 QCETRGLLQQGLAEGHHTLLWPDTASLDHQVVGLHHTIVREATHGSDVLLGPVELSRG 460
           Q    G + + LA+   TLL  D   LD     L HTI+ ++  G  V L  +  S G
Sbjct: 234 QVRGNGTVTEKLAKEALTLLQVDPRGLDTIDQKLLHTII-QSFRGGPVGLDTIAASIG 290

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>CY42_TRYBB (Q99396) Receptor-type adenylate cyclase GRESAG 4.2 (EC 4.6.1.1)|
           (ATP pyrophosphate-lyase) (Adenylyl cyclase) (Fragment)
          Length = 572

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
 Frame = -3

Query: 565 VSYTVARAGQNGYHHRTEMNKKVYKIGKVGQ-----ETHDASTEFDRTEKDITPMGGFPH 401
           + Y     G + Y        +   +G  GQ     ET+ + +  +R++ D+TP+GG P 
Sbjct: 401 IRYDEVTKGYDYYGQTANTAARTESVGNGGQVLMTCETYHSLSTAERSQFDVTPLGGVPL 460

Query: 400 YGV 392
            GV
Sbjct: 461 RGV 463

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>IPAC_SHIFL (P18012) Invasin ipaC (42 kDa antigen)|
          Length = 363

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +2

Query: 176 SSSSLELAIEPLLLVGGLETAVPKLGRGVDKLELDFLQCETRGLLQQGLA 325
           SS+++ L I   +L+  L TA  KLG  +  +  D  +     +++QGLA
Sbjct: 103 SSNAVSLIISVAVLLSALRTAETKLGSQLSLIAFDATKSAAENIVRQGLA 152

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>IPAC_SHIDY (Q03946) Invasin ipaC (42 kDa antigen)|
          Length = 363

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +2

Query: 176 SSSSLELAIEPLLLVGGLETAVPKLGRGVDKLELDFLQCETRGLLQQGLA 325
           SS+++ L I   +L+  L TA  KLG  +  +  D  +     +++QGLA
Sbjct: 103 SSNAVSLIISVAVLLSALRTAETKLGSQLSLIAFDATKSAAENIVRQGLA 152

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>RL3_MYCPU (Q98PY0) 50S ribosomal protein L3|
          Length = 266

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = -3

Query: 391 VKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFV 263
           VK + L++KG   GPKK  V +++   K  S+ A++ + L+ V
Sbjct: 182 VKNNILLVKGAVPGPKKGFVVIKECAKKIPSKEAVKLVDLEIV 224

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>HEM3_DESVH (Q72AV0) Porphobilinogen deaminase (EC 2.5.1.61) (PBG)|
           (Hydroxymethylbilane synthase) (HMBS)
           (Pre-uroporphyrinogen synthase)
          Length = 315

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
 Frame = +2

Query: 170 LRSSSSLELAIEPLL----LVGGLETAVPKLGRGVDKLELDFLQCETRGLLQQGLAEGHH 337
           LR  S L LA+ P L    L G ++T + KL  G    E D +   T GL + GLA  HH
Sbjct: 129 LRRQSQL-LALRPDLDIISLRGNVDTRLRKLMDG----EFDAIVMATAGLKRLGLAAPHH 183

Query: 338 TLLWP 352
            +L P
Sbjct: 184 EVLAP 188

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>ICAM5_HUMAN (Q9UMF0) Intercellular adhesion molecule 5 precursor (ICAM-5)|
           (Telencephalin)
          Length = 924

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 16/66 (24%), Positives = 27/66 (40%)
 Frame = +2

Query: 230 ETAVPKLGRGVDKLELDFLQCETRGLLQQGLAEGHHTLLWPDTASLDHQVVGLHHTIVRE 409
           E+  P     ++  E   L C  RG    G+      + WP+   +  +  G +H +   
Sbjct: 670 ESTCPSHQTWLEGAEASALACAARGRPSPGVRCSREGIPWPEQQRVSREDAGTYHCVATN 729

Query: 410 ATHGSD 427
           A HG+D
Sbjct: 730 A-HGTD 734

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>PHF12_MOUSE (Q5SPL2) PHD finger protein 12 (PHD factor 1) (Pf1)|
          Length = 1003

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 535 SDQPEQQCRTP*QDARHQYRQPCEDLCGSCGEGG 636
           +D+ E++ R P +++R   R    D C SC EGG
Sbjct: 33  TDEAEKRSRKPEKESRRSGRATNHDSCDSCKEGG 66

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>RUVB_RHOBA (Q7UPG4) Holliday junction ATP-dependent DNA helicase ruvB (EC|
           3.6.1.-)
          Length = 366

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 18/87 (20%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
 Frame = +2

Query: 152 KMTQLILRSSSSLELAIEPLL--LVGGLETAVPKLGRGVDKLELDFLQCETRGLLQQGLA 325
           ++ +++LR+S  L + ++P    ++     + P+L         D+ Q +T+G ++  + 
Sbjct: 216 ELAEIVLRNSKKLNIEVDPTSAGVIADRSRSTPRLANNRLLWVRDYAQSKTKGNVEASVC 275

Query: 326 EGHHTLLWPDTASLDHQVVGLHHTIVR 406
           E    ++  D   LD Q      T++R
Sbjct: 276 EAALDMIGIDHLGLDKQDRNYLDTLMR 302

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>BPA1_MOUSE (Q91ZU6) Bullous pemphigoid antigen 1, isoforms 1/2/3/4 (BPA)|
            (Hemidesmosomal plaque protein) (Dystonia musculorum
            protein) (Dystonin)
          Length = 7389

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 18/55 (32%), Positives = 33/55 (60%)
 Frame = +2

Query: 143  RFDKMTQLILRSSSSLELAIEPLLLVGGLETAVPKLGRGVDKLELDFLQCETRGL 307
            R+  +T+L    + +LE A++   L G L++   +L   +DK+E++ L  ET+GL
Sbjct: 5516 RYKDITKLSADVAKTLEHALQ---LAGQLQSMHKELCNWLDKVEVELLSYETQGL 5567

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>POLR_OYMV (P20127) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1776

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 18/85 (21%), Positives = 35/85 (41%)
 Frame = +3

Query: 264  TNLSLISSSARREVCFSRDWRRVTTRFFGPTQHPLIIR*SAFTTP**GKPPMGVMSFSVL 443
            T  +++S+++R +     DWR    R F  +QH                         V 
Sbjct: 1400 TQATIVSNASRSDP----DWRYTVVRIFAKSQH------------------------KVN 1431

Query: 444  SNSVEASWVSCPTLPILYTFLFISV 518
              S+  SW +C TL +++ F+ +++
Sbjct: 1432 DGSIFGSWKACQTLALMHDFVILTL 1456

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>PHF12_HUMAN (Q96QT6) PHD finger protein 12 (PHD factor 1) (Pf1)|
          Length = 1004

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 535 SDQPEQQCRTP*QDARHQYRQPCEDLCGSCGEGG 636
           +D+ E++ R P ++ R   R    D C SC EGG
Sbjct: 33  TDEAEKRSRKPEKEPRRSGRATNHDSCDSCKEGG 66

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>RUVB_ENTFA (Q839T5) Holliday junction ATP-dependent DNA helicase ruvB (EC|
           3.6.1.-)
          Length = 338

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
 Frame = +2

Query: 131 VSHVRF---DKMTQLILRSSSSLELAI--EPLLLVGGLETAVPKLGRGVDKLELDFLQCE 295
           +SH+ +     + +++LRS+   +  I  E    +       P++   + K   DF Q +
Sbjct: 178 ISHMEYYQEQDLKEIVLRSADIFQTEIFEEGAFEIARRSRGTPRIANRLLKRVRDFAQVQ 237

Query: 296 TRGLLQQGLAEGHHTLLWPDTASLDH 373
           + G + + +A+   TLL  D   LD+
Sbjct: 238 SDGKIDRAIADKALTLLQVDHQGLDY 263


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,553,832
Number of Sequences: 219361
Number of extensions: 2086895
Number of successful extensions: 6015
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 5738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5958
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6200242422
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result