ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5m22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LAMA4_MOUSE (P97927) Laminin alpha-4 chain precursor 32 0.32
2NU1M_LUMTE (Q37546) NADH-ubiquinone oxidoreductase chain 1 (EC 1... 28 7.8

>LAMA4_MOUSE (P97927) Laminin alpha-4 chain precursor|
          Length = 1816

 Score = 32.3 bits (72), Expect = 0.32
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 123 TVWCLILAARLVWLAVCWFDSLGDGS 46
           T WC +LA  L+W AVC   + GDG+
Sbjct: 5   TAWCSVLALWLLWCAVCSNAASGDGN 30



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>NU1M_LUMTE (Q37546) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 1)
          Length = 308

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 46  RPIAETVKPTYGQPNKPRC*NQTPYCFGDGVGXVL 150
           +P A+ +K    +  KP   NQTP+ F   +G VL
Sbjct: 50  QPFADAIKLFVKEQAKPNPSNQTPFLFAPTMGLVL 84


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,149,660
Number of Sequences: 219361
Number of extensions: 589879
Number of successful extensions: 1272
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1272
length of database: 80,573,946
effective HSP length: 74
effective length of database: 64,341,232
effective search space used: 1544189568
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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