ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags5m22 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB180740.1| Aegilops speltoides mRNA for WNdr1B-like protein kinase, complete cds Length = 2093 Score = 367 bits (185), Expect = 1e-98 Identities = 269/298 (90%), Gaps = 3/298 (1%) Strand = Plus / Minus Query: 1 gctggtaacaaagtatacacttatgctgtagccngtaataacctgagacccatcgccgag 60 ||||||||||| ||||||||||||||||||||| |||||| || | |||||||||||||| Sbjct: 2065 gctggtaacaa-gtatacacttatgctgtagccagtaatagccagggacccatcgccgag 2007 Query: 61 actgtcaaaccaacatacggccaaccaaacaagcctcgctgctaaaatcaaacaccatac 120 ||||||||||||||||||||| ||||||||| || || ||||||| |||||||||||||| Sbjct: 2006 actgtcaaaccaacatacggcgaaccaaacaggcatcactgctaacatcaaacaccatac 1947 Query: 121 tgttttggagacgggg--tgggttntgttttaacgaattcactaaanaggaagcatnggn 178 | |||||||||| ||| ||| || ||||||||||||||||||||| || |||||| || Sbjct: 1946 tattttggagacaggggatggattttgttttaacgaattcactaaaaagaaagcatcggt 1887 Query: 179 tngaatttacaaaagtnggacggggtaacaccaagaccaaaaggcaacagttgtttttcc 238 | | ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 1886 taggatttacaaaagctggacggggtaacaccaagaccaaaaggcaacagttttttttcc 1827 Query: 239 tntcttttacttttntgtggnttactttttaaaacctccatatgctatttacgtcgag 296 | |||||||||||| ||||| |||||||||||||||||||||| |||||||||||||| Sbjct: 1826 tctcttttacttttctgtggtttactttttaaaacctccatatcctatttacgtcgag 1769
>dbj|AB180741.1| Aegilops tauschii mRNA for WNdr1D-like protein kinase, complete cds Length = 2094 Score = 361 bits (182), Expect = 8e-97 Identities = 270/299 (90%), Gaps = 4/299 (1%) Strand = Plus / Minus Query: 1 gctggtaacaaagtatacacttatgctgtagccngtaataacctgagacccatcgccgag 60 ||||||||||| ||||||||||||||||||||| |||||| || | |||||||||||||| Sbjct: 2066 gctggtaacaa-gtatacacttatgctgtagccagtaatagccggggacccatcgccgag 2008 Query: 61 actgtcaaaccaacatacggccaaccaaacaagcctcgctgctaaaatcaaacaccatac 120 ||||||||||||||||||||| ||||||||| || || ||||||| |||||||||||||| Sbjct: 2007 actgtcaaaccaacatacggcgaaccaaacaggcatcactgctaacatcaaacaccatac 1948 Query: 121 tgttttggagac--ggggtgggttntgttttaacgaattcactaaanaggaagcatnggn 178 | |||||||||| ||||||| || ||||||||||||||||||||| || |||||| || Sbjct: 1947 tattttggagacagggggtggattttgttttaacgaattcactaaaaagaaagcatcggt 1888 Query: 179 tngaatttacaaaagtnggacggggtaacaccaagaccaaaaggcaacag-ttgtttttc 237 | | ||||||||||| ||||||||||||||||||||||||||||||||| || |||||| Sbjct: 1887 taggatttacaaaagctggacggggtaacaccaagaccaaaaggcaacagtttttttttc 1828 Query: 238 ctntcttttacttttntgtggnttactttttaaaacctccatatgctatttacgtcgag 296 || |||||||||||| ||||| |||||||||||||||||||||| |||||||||||||| Sbjct: 1827 ctctcttttacttttctgtggtttactttttaaaacctccatatcctatttacgtcgag 1769
>dbj|AB179753.1| Triticum aestivum WNdr1D mRNA for protein kinase, complete cds Length = 2094 Score = 361 bits (182), Expect = 8e-97 Identities = 270/299 (90%), Gaps = 4/299 (1%) Strand = Plus / Minus Query: 1 gctggtaacaaagtatacacttatgctgtagccngtaataacctgagacccatcgccgag 60 ||||||||||| ||||||||||||||||||||| |||||| || | |||||||||||||| Sbjct: 2066 gctggtaacaa-gtatacacttatgctgtagccagtaatagccggggacccatcgccgag 2008 Query: 61 actgtcaaaccaacatacggccaaccaaacaagcctcgctgctaaaatcaaacaccatac 120 ||||||||||||||||||||| ||||||||| || || ||||||| |||||||||||||| Sbjct: 2007 actgtcaaaccaacatacggcgaaccaaacaggcatcactgctaacatcaaacaccatac 1948 Query: 121 tgttttggagac--ggggtgggttntgttttaacgaattcactaaanaggaagcatnggn 178 | |||||||||| ||||||| || ||||||||||||||||||||| || |||||| || Sbjct: 1947 tattttggagacagggggtggattttgttttaacgaattcactaaaaagaaagcatcggt 1888 Query: 179 tngaatttacaaaagtnggacggggtaacaccaagaccaaaaggcaacag-ttgtttttc 237 | | ||||||||||| ||||||||||||||||||||||||||||||||| || |||||| Sbjct: 1887 taggatttacaaaagctggacggggtaacaccaagaccaaaaggcaacagtttttttttc 1828 Query: 238 ctntcttttacttttntgtggnttactttttaaaacctccatatgctatttacgtcgag 296 || |||||||||||| ||||| |||||||||||||||||||||| |||||||||||||| Sbjct: 1827 ctctcttttacttttctgtggtttactttttaaaacctccatatcctatttacgtcgag 1769
>dbj|AB179754.1| Triticum aestivum WNdr1B mRNA for protein kinase, complete cds Length = 2094 Score = 335 bits (169), Expect = 5e-89 Identities = 258/289 (89%), Gaps = 4/289 (1%) Strand = Plus / Minus Query: 12 agtatacacttatgctgtagccngtaataacctgagacccatcgccgagactgtcaaacc 71 |||||||||||||||||||||| |||||| || | ||||||||||||||||||||||||| Sbjct: 2057 agtatacacttatgctgtagccagtaatagccggggacccatcgccgagactgtcaaacc 1998 Query: 72 aacatacggccaaccaaacaagcctcgctgctaaaatcaaacaccatactgttttggaga 131 |||||||||| ||||||||| || || ||||||| ||||||||||||||| ||||||||| Sbjct: 1997 aacatacggcgaaccaaacaggcatcactgctaacatcaaacaccatactattttggaga 1938 Query: 132 c--ggggtgggttntgttttaacgaattcactaaanaggaagcatnggntngaatttaca 189 | ||| ||| || ||||||||| ||||||||||| || |||||| || | | ||||||| Sbjct: 1937 caggggatggattttgttttaacaaattcactaaaaagaaagcatcggttaggatttaca 1878 Query: 190 aaagtnggacggggtaacaccaagaccaaaaggcaacag--ttgtttttcctntctttta 247 |||| ||||||||||||||||||||||||||||||||| || |||||||| ||||||| Sbjct: 1877 aaagctggacggggtaacaccaagaccaaaaggcaacagttttttttttcctctctttta 1818 Query: 248 cttttntgtggnttactttttaaaacctccatatgctatttacgtcgag 296 ||||| ||||| |||||||||||||||||||||| |||||||||||||| Sbjct: 1817 cttttctgtggtttactttttaaaacctccatatcctatttacgtcgag 1769
>dbj|AB179755.1| Triticum aestivum WNdr1A mRNA for protein kinase, complete cds Length = 2093 Score = 323 bits (163), Expect = 2e-85 Identities = 255/288 (88%), Gaps = 2/288 (0%) Strand = Plus / Minus Query: 11 aagtatacacttatgctgtagccngtaataacctgagacccatcgccgagactgtcaaac 70 ||||||||||||||||||||||| |||||| || |||||||||||||||||||||| | Sbjct: 2056 aagtatacacttatgctgtagccagtaatagccgaggacccatcgccgagactgtcaacc 1997 Query: 71 caacatacggccaaccaaacaagcctcgctgctaaaatcaaacaccatactgttttggag 130 ||||||||||| ||||||||| || || ||||||| ||||||||||||||| |||||||| Sbjct: 1996 caacatacggcgaaccaaacaggcatcactgctaacatcaaacaccatactattttggag 1937 Query: 131 acgggg--tgggttntgttttaacgaattcactaaanaggaagcatnggntngaatttac 188 || ||| ||| | ||||||||| ||||||||||| || |||||| || | | |||||| Sbjct: 1936 acaggggatggatgttgttttaacaaattcactaaaaagaaagcatcggttaggatttac 1877 Query: 189 aaaagtnggacggggtaacaccaagaccaaaaggcaacagttgtttttcctntcttttac 248 ||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct: 1876 aaaagctggacggggtaacaccaagaccaaaaggcaacagttttttttcctctcttttac 1817 Query: 249 ttttntgtggnttactttttaaaacctccatatgctatttacgtcgag 296 |||| ||||| |||||||| ||||||||||||| |||||||||||||| Sbjct: 1816 ttttctgtggtttacttttcaaaacctccatatcctatttacgtcgag 1769
>dbj|AB180739.1| Triticum baeoticum mRNA for WNdr1A-like protein kinase, complete cds Length = 2093 Score = 313 bits (158), Expect = 2e-82 Identities = 265/299 (88%), Gaps = 5/299 (1%) Strand = Plus / Minus Query: 1 gctggtaacaaagtatacacttatgctgtagccngtaataacctgagacccatcgccgag 60 ||||||||||| ||||||||||||||||||||| |||||| || |||||||||||||| Sbjct: 2065 gctggtaacaa-gtatacacttatgctgtagccagtaatagccgaggacccatcgccgag 2007 Query: 61 actgtcaaaccaacatacggccaaccaaacaagcctcgctgctaaaatcaaacaccatac 120 |||||||| |||||||||||| ||||||||| || || ||||||| |||||||||||||| Sbjct: 2006 actgtcaacccaacatacggcgaaccaaacaggcatcactgctaacatcaaacaccatac 1947 Query: 121 tgttttggagac--ggggtgggttntgttttaacgaattcactaaanaggaagcatnggn 178 | |||||||||| ||| ||| || ||||||||| ||||||||||| || |||||| || Sbjct: 1946 tattttggagacaggggatggattttgttttaacaaattcactaaaaagaaagcatcggt 1887 Query: 179 tngaatttacaaaagtnggacggggt-aacaccaagaccaaaaggcaacagttgtttttc 237 | | ||||||||||| ||||||||| |||||||||||||||||||||||||| |||||| Sbjct: 1886 taggatttacaaaagctggacggggtaaacaccaagaccaaaaggcaacagtt-tttttc 1828 Query: 238 ctntcttttacttttntgtggnttactttttaaaacctccatatgctatttacgtcgag 296 || |||||||||||| ||||| |||||||| ||||||||||||| |||||||||||||| Sbjct: 1827 ctctcttttacttttctgtggtttacttttcaaaacctccatatcctatttacgtcgag 1769
>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence Length = 4837408 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 12 agtatacacttatgctgtagcc 33 |||||||||||||||||||||| Sbjct: 4835073 agtatacacttatgctgtagcc 4835094
>gb|AC121810.3| Mus musculus BAC clone RP23-453G13 from chromosome 1, complete sequence Length = 208102 Score = 42.1 bits (21), Expect = 0.98 Identities = 21/21 (100%) Strand = Plus / Plus Query: 205 aacaccaagaccaaaaggcaa 225 ||||||||||||||||||||| Sbjct: 174825 aacaccaagaccaaaaggcaa 174845
>gb|AC167020.3| Mus musculus BAC clone RP23-201I6 from chromosome 1, complete sequence Length = 209249 Score = 42.1 bits (21), Expect = 0.98 Identities = 21/21 (100%) Strand = Plus / Plus Query: 205 aacaccaagaccaaaaggcaa 225 ||||||||||||||||||||| Sbjct: 32604 aacaccaagaccaaaaggcaa 32624
>ref|NG_000004.2| Homo sapiens cytochrome P450, family 3, subfamily A (CYP3A) on chromosome 7 Length = 428605 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 caaacaccatactgttttgg 128 |||||||||||||||||||| Sbjct: 230452 caaacaccatactgttttgg 230433
>emb|AL589794.7| Human DNA sequence from clone RP11-564C4 on chromosome 10 Contains the 3' end of the gene for apobec-1 complementation factor (ACF) (ASP), the gene for a novel protein similar to N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2 (ASAH2), the cathepsin L-like 2 (CTSLL2) pseudogene, three novel pseudogenes (KIAA1553), a novel gene, a protein geranylgeranyltransferase type I beta subunit (PGGT1B) pseudogene and a CpG island, complete sequence Length = 178899 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 aaatcaaacaccatactgtt 124 |||||||||||||||||||| Sbjct: 93866 aaatcaaacaccatactgtt 93847
>emb|AL512662.8| Human DNA sequence from clone RP11-479O17 on chromosome 10 Contains a cathepsin L (CTSL) pseudogene, a protein geranylgeranyltransferase type I beta subunit (PGGT1B) pseudogene, the MBL1P1 gene for mannose-binding lectin (protein A) 1 pseudogene 1, the SFTPD gene for surfactant pulmonary-associated protein D, a novel gene, two novel pseudogenes and three CpG islands, complete sequence Length = 134411 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 aaatcaaacaccatactgtt 124 |||||||||||||||||||| Sbjct: 37356 aaatcaaacaccatactgtt 37337
>gb|AC182491.2| Pan troglodytes BAC clone CH251-394K8 from chromosome 10, complete sequence Length = 168541 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 aaatcaaacaccatactgtt 124 |||||||||||||||||||| Sbjct: 149128 aaatcaaacaccatactgtt 149109
>gb|AC069294.5|AC069294 Homo sapiens BAC clone RP11-757A13 from 7, complete sequence Length = 123778 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 caaacaccatactgttttgg 128 |||||||||||||||||||| Sbjct: 116766 caaacaccatactgttttgg 116747
>gb|AF280107.1|AF280107 Homo sapiens cytochrome P450 polypeptide 43 (CYP3A43) gene, partial cds; cytochrome P450 polypeptide 4 (CYP3A4) and cytochrome P450 polypeptide 7 (CYP3A7) genes, complete cds; and cytochrome P450 polypeptide 5 (CYP3A5) gene, partial cds Length = 174832 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 caaacaccatactgttttgg 128 |||||||||||||||||||| Sbjct: 143490 caaacaccatactgttttgg 143471
>gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete genome Length = 2905187 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 gctaaaatcaaacaccatac 120 |||||||||||||||||||| Sbjct: 280469 gctaaaatcaaacaccatac 280450 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,224,605 Number of Sequences: 3902068 Number of extensions: 2224605 Number of successful extensions: 36067 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 36014 Number of HSP's gapped (non-prelim): 42 length of query: 296 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 274 effective length of database: 17,147,199,772 effective search space: 4698332737528 effective search space used: 4698332737528 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
