ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags6b14 |
|---|---|
| Clone Library Name | barley_pub |
>CYPR4_CYNCA (P40781) Protein CYPRO4| Length = 501 Score = 269 bits (687), Expect = 5e-72 Identities = 125/166 (75%), Positives = 146/166 (87%), Gaps = 1/166 (0%) Frame = -3 Query: 600 SPITHVDVTYDGKWILGTTDTYLILICTIFIDKDGKEKTGFGGRMGNRIAAPRLLKLSPL 421 SPITHVDVTYDGKWILGTTDTYLILIC++F DKDGK KTGF GRMGN+I APRLLKL+P+ Sbjct: 324 SPITHVDVTYDGKWILGTTDTYLILICSLFTDKDGKTKTGFSGRMGNKIPAPRLLKLTPV 383 Query: 420 HSHLAGDNSKFREGRFSWVTDNGKQERHLVTTVGRYSVVWNFLQVKNSHHECYQNQEGLK 241 SH AG N+KF GRFSWVT++GKQERHLV TVG++SV+W+F +VKNS HECY+NQEGLK Sbjct: 384 DSHTAGVNNKFHGGRFSWVTESGKQERHLVATVGKFSVIWDFQRVKNSGHECYRNQEGLK 443 Query: 240 SCYCYKVIPKDESIVASRFMHEKY-DVSDCPEAPLVVATPMKVTSF 106 SCYCYK++ KDESI+ S FM++KY V D PEAPLV+ATP K+TSF Sbjct: 444 SCYCYKLMTKDESIIESLFMNDKYAAVGDSPEAPLVMATPKKITSF 489
>VID27_YEAST (P40157) Vacuolar import and degradation protein VID27| Length = 782 Score = 44.7 bits (104), Expect = 2e-04 Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 5/142 (3%) Frame = -3 Query: 594 ITHVDVTYDGKWILGTTDTYLILICTIFIDKDGKEKTGFG---GRMGNRIAAPRLLKLSP 424 I + + DGKW+L T ++ L+L+ KDGK G + +LK+ P Sbjct: 609 IKFITTSADGKWLLATCESTLLLMDLKI--KDGKNAGNIGFLKSFPASENVKTYVLKIRP 666 Query: 423 LHSH--LAGDNSKFREGRFSWVTDNGKQERHLVTTVGRYSVVWNFLQVKNSHHECYQNQE 250 HS L R + + T G+QE+ +VT+ G Y++ W+ + NQ+ Sbjct: 667 EHSASILTYTKKPIRFTKAYFNTGIGQQEQTIVTSTGPYAISWSLKGI--------LNQD 718 Query: 249 GLKSCYCYKVIPKDESIVASRF 184 G + Y Y++ + +VA F Sbjct: 719 GSNN-YPYRIRRYNADVVADNF 739
>ACK1_MOUSE (O54967) Activated CDC42 kinase 1 (EC 2.7.10.2) (ACK-1)| (Non-receptor protein tyrosine kinase Ack) (Tyrosine kinase non-receptor protein 2) Length = 1055 Score = 34.7 bits (78), Expect = 0.22 Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 2/96 (2%) Frame = -2 Query: 466 GEPNCCTKTAQAQPTPLSSCRGQQQVP*GQVFMGHR*RQAGEASGDDRWEVQRGVELPPG 287 G+P +TA+ C Q QVP GQ+ + GDD+ +V V +PP Sbjct: 710 GKPPSSVQTAEIFQALQQECMRQLQVPTGQL------TPSPTPGGDDKPQVPPRVPIPPR 763 Query: 286 EEQP-PRVLPEPGGAQELLLLQGDPQ-GRVHRRQPL 185 +P + P P G +E G RV R+PL Sbjct: 764 PTRPRVELSPAPSGEEETSRWPGPASPPRVPPREPL 799
>POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC 3.4.23.-); Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] Length = 1161 Score = 33.5 bits (75), Expect = 0.49 Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 2/91 (2%) Frame = -3 Query: 582 DVTYDGKWILGTTDTYLILICTIFIDKDGKEKTGFGGRMG-NRIAAPRLLKL-SPLHSHL 409 ++T +G+ G TDT+ + I KD K+ G + R P +L PL++ + Sbjct: 374 NITKEGR---GLTDTFKQKLLNITPPKDLKQLQSILGLLNFARNFIPNYSELVKPLYTIV 430 Query: 408 AGDNSKFREGRFSWVTDNGKQERHLVTTVGR 316 A N KF SW DN Q +H+++ + + Sbjct: 431 ANANGKF----ISWTEDNSNQLQHIISVLNQ 457
>7LESS_DROME (P13368) Protein sevenless (EC 2.7.10.1)| Length = 2554 Score = 29.3 bits (64), Expect(2) = 1.1 Identities = 18/56 (32%), Positives = 24/56 (42%) Frame = -2 Query: 565 EVDTRNH*YLPDTHLHHFH*QGWEGEDRVWWKNGEPNCCTKTAQAQPTPLSSCRGQ 398 ++DTRN L T H G EGE R+ W N T + P L+ R + Sbjct: 1416 DLDTRNRRRLVHTASPVEHLVGIEGEQRLLWVNEHVELLTHVPGSAPAKLARMRAE 1471 Score = 21.6 bits (44), Expect(2) = 1.1 Identities = 10/37 (27%), Positives = 15/37 (40%) Frame = -3 Query: 411 LAGDNSKFREGRFSWVTDNGKQERHLVTTVGRYSVVW 301 L K +G W T G+ + LV S++W Sbjct: 1504 LCNFEGKILQGERVWSTPRGRLLKDLVALPQAQSLIW 1540
>RPOB_RICMA (Q9RH43) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1373 Score = 30.4 bits (67), Expect = 4.1 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 6/69 (8%) Frame = -3 Query: 300 NFLQVKNSHHECYQNQEGLKSCYCYKVIPKDESIVAS------RFMHEKYDVSDCPEAPL 139 NFLQ+ E + +GL+S D S +A+ F KYDV +C + L Sbjct: 46 NFLQLNIKDSE--RKNKGLQSILNSIFPISDSSNIANLEFVKYEFDTPKYDVEECSQRSL 103 Query: 138 VVATPMKVT 112 A P+KVT Sbjct: 104 SYAAPLKVT 112
>RPOB_RICFE (Q4UKD4) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1373 Score = 30.4 bits (67), Expect = 4.1 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 6/69 (8%) Frame = -3 Query: 300 NFLQVKNSHHECYQNQEGLKSCYCYKVIPKDESIVAS------RFMHEKYDVSDCPEAPL 139 NFLQ+ E + +GL+S D S +A+ F KYDV +C + L Sbjct: 46 NFLQLNIKDSE--RKNKGLQSILNSIFPISDSSNIANLEFVKYEFDTPKYDVEECSQRSL 103 Query: 138 VVATPMKVT 112 A P+KVT Sbjct: 104 SYAAPLKVT 112
>RPOB_RICCN (Q9RH41) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1373 Score = 30.4 bits (67), Expect = 4.1 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 6/69 (8%) Frame = -3 Query: 300 NFLQVKNSHHECYQNQEGLKSCYCYKVIPKDESIVAS------RFMHEKYDVSDCPEAPL 139 NFLQ+ E + +GL+S D S +A+ F KYDV +C + L Sbjct: 46 NFLQLNIKDSE--RKNKGLQSILNSIFPISDSSNIANLEFVKYEFDTPKYDVEECSQRSL 103 Query: 138 VVATPMKVT 112 A P+KVT Sbjct: 104 SYAAPLKVT 112
>RPOB_RICTY (P77941) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1374 Score = 30.4 bits (67), Expect = 4.1 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 6/69 (8%) Frame = -3 Query: 300 NFLQVKNSHHECYQNQEGLKSCYCYKVIPKDESIVAS------RFMHEKYDVSDCPEAPL 139 NFLQ+ E + +GL+S D S +A+ F KYDV +C + L Sbjct: 46 NFLQLNIKDSE--RKNKGLQSILNSIFPISDSSNIANLEFVKYEFDTPKYDVDECSQRSL 103 Query: 138 VVATPMKVT 112 A P+KVT Sbjct: 104 SYAAPLKVT 112
>RPOB_RICPR (O52271) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1374 Score = 30.4 bits (67), Expect = 4.1 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 6/69 (8%) Frame = -3 Query: 300 NFLQVKNSHHECYQNQEGLKSCYCYKVIPKDESIVAS------RFMHEKYDVSDCPEAPL 139 NFLQ+ E + +GL+S D S +A+ F KYDV +C + L Sbjct: 46 NFLQLNIKDSE--RKNKGLQSILNSIFPISDSSNIANLEFVKYEFDTPKYDVDECSQRSL 103 Query: 138 VVATPMKVT 112 A P+KVT Sbjct: 104 SYAAPLKVT 112
>BTBDC_HUMAN (Q8IY92) BTB/POZ domain-containing protein 12| Length = 1151 Score = 30.4 bits (67), Expect = 4.1 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = -2 Query: 322 WEVQRGVELPPGEEQPPRVLPEPGGAQE 239 W+V G E P E PP +P GGAQ+ Sbjct: 828 WDVWDGEEQRPPETPPPAQMPSAGGAQK 855
>APLP1_HUMAN (P51693) Amyloid-like protein 1 precursor (APLP) (APLP-1)| [Contains: C30] Length = 650 Score = 30.0 bits (66), Expect = 5.4 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 1/65 (1%) Frame = -2 Query: 298 LPPGEEQPPRVLPEPGGAQELLLLQGDPQGRVHRRQPLHAREVRRERL-PRGTAGRRDAH 122 LP G + PE L + V R P H+ E++R+ L P GT R+A Sbjct: 523 LPKGSTEQDAASPEKEKMNPLEQYERKVNASVPRGFPFHSSEIQRDELAPAGTGVSREAV 582 Query: 121 EGHLL 107 G L+ Sbjct: 583 SGLLI 587
>YHL1_EBV (P03181) Hypothetical protein BHLF1| Length = 660 Score = 30.0 bits (66), Expect = 5.4 Identities = 23/72 (31%), Positives = 25/72 (34%), Gaps = 11/72 (15%) Frame = -2 Query: 295 PPGEEQPPRVLPEPGGAQELLLLQGDPQG-----------RVHRRQPLHAREVRRERLPR 149 PP + P EP Q+L Q P G R HRR P R R PR Sbjct: 473 PPAAARLPPERQEPRLPQDLAAAQRCPAGPPPTRSGAAAQRTHRRPPGCPRSARNPGCPR 532 Query: 148 GTAGRRDAHEGH 113 R A GH Sbjct: 533 TWRRRSGAQRGH 544 Score = 30.0 bits (66), Expect = 5.4 Identities = 23/72 (31%), Positives = 25/72 (34%), Gaps = 11/72 (15%) Frame = -2 Query: 295 PPGEEQPPRVLPEPGGAQELLLLQGDPQG-----------RVHRRQPLHAREVRRERLPR 149 PP + P EP Q+L Q P G R HRR P R R PR Sbjct: 348 PPAAARLPPERQEPRLPQDLAAAQRCPAGPPPTRSGAAAQRTHRRPPGCPRSARNPGCPR 407 Query: 148 GTAGRRDAHEGH 113 R A GH Sbjct: 408 TWRRRSGAQRGH 419 Score = 30.0 bits (66), Expect = 5.4 Identities = 23/72 (31%), Positives = 25/72 (34%), Gaps = 11/72 (15%) Frame = -2 Query: 295 PPGEEQPPRVLPEPGGAQELLLLQGDPQG-----------RVHRRQPLHAREVRRERLPR 149 PP + P EP Q+L Q P G R HRR P R R PR Sbjct: 223 PPAAARLPPERQEPRLPQDLAAAQRCPAGPPPTRSGAAAQRTHRRPPGCPRSARNPGCPR 282 Query: 148 GTAGRRDAHEGH 113 R A GH Sbjct: 283 TWRRRSGAQRGH 294
>YT44_STRFR (P20188) Hypothetical 44.4 kDa protein in transposon Tn4556| Length = 395 Score = 29.6 bits (65), Expect = 7.0 Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 13/87 (14%) Frame = -2 Query: 343 EASGDDRWEVQRGVELPPGEEQPPRVL-----PEPGGAQELLL--LQGD-PQGRVHRRQP 188 E GD R ++ G L G P + L PG +LL ++ D +GR RR+P Sbjct: 87 EQRGDRRGQLVPGHHLLDGRPHPFQALHFRRRDLPGVGVDLLARGVEHDLERGRQLRRRP 146 Query: 187 LHARE-----VRRERLPRGTAGRRDAH 122 LHAR+ +R L G RRD H Sbjct: 147 LHARQRLQLLLRALALRPGQQLRRDQH 173
>PTH1_CORGL (Q8NRV3) Peptidyl-tRNA hydrolase 1 (EC 3.1.1.29) (PTH 1)| Length = 177 Score = 29.6 bits (65), Expect = 7.0 Identities = 12/31 (38%), Positives = 17/31 (54%) Frame = -2 Query: 328 DRWEVQRGVELPPGEEQPPRVLPEPGGAQEL 236 D W++ G+ PPG P + +P G QEL Sbjct: 126 DYWKLSMGIGRPPGRMDPASFVLKPFGKQEL 156
>PSAA_MASLA (O52474) Photosystem I P700 chlorophyll a apoprotein A1 (PsaA)| Length = 752 Score = 29.6 bits (65), Expect = 7.0 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = -1 Query: 473 EEWGTELLHQDCSSSAHSTLILQGTTASSVRAGFHGSQITASRRGIW 333 E W ++ LH S+ ++ Q V GFHG QIT+ IW Sbjct: 102 EAWLSDPLHVKPSAQVVWPIVGQDILNGDVGGGFHGIQITSGLFQIW 148
>RNS1A_CAVPO (P00678) Ribonuclease pancreatic A (EC 3.1.27.5) (RNase IA)| Length = 124 Score = 29.3 bits (64), Expect = 9.2 Identities = 11/25 (44%), Positives = 17/25 (68%) Frame = -2 Query: 460 PNCCTKTAQAQPTPLSSCRGQQQVP 386 PNC +T+QAQ + + +C G+ VP Sbjct: 93 PNCSYRTSQAQKSIIVACEGKPYVP 117
>SELU_PSE14 (Q48NL9) tRNA 2-selenouridine synthase (EC 2.9.1.-)| (Selenophosphate-dependent tRNA 2-selenouridine synthase) Length = 366 Score = 29.3 bits (64), Expect = 9.2 Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 1/75 (1%) Frame = -3 Query: 543 DTYLILICTIFIDKDGKEKTGFGGRMGNRIAAPRLLK-LSPLHSHLAGDNSKFREGRFSW 367 D Y+I +C FI G+E+ GFG + A RLL+ L+ +H L G+ R R S Sbjct: 253 DDYVINLCAEFITVKGEEQ-GFG------LFAERLLQSLNNIHKRLGGE----RHQRLSG 301 Query: 366 VTDNGKQERHLVTTV 322 + +E+ TV Sbjct: 302 LMQTALEEQQRSGTV 316
>G6PI_FRATT (Q5NFC4) Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI)| (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) Length = 540 Score = 29.3 bits (64), Expect = 9.2 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Frame = -3 Query: 414 HLAGDNSKFREGRFSW--VTDNGKQERHLVTTVGRYSVVWNFLQVKNSHHECYQNQEGL 244 ++AG+ ++ G W V NG+ H + G + +F+ + SHH +Q+ L Sbjct: 353 NIAGETVNYQTGVVLWGGVGTNGQHAFHQLLHQGNIFIPVDFIAIATSHHNYDNHQQAL 411
>CI040_MOUSE (Q8VCE4) Protein C9orf40 homolog| Length = 163 Score = 29.3 bits (64), Expect = 9.2 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 6/55 (10%) Frame = -2 Query: 334 GDDRWEVQ----RGVELPPGEEQPPRVLPEPGGAQELLLLQGDPQ--GRVHRRQP 188 GDDR E+Q E PPGE++ PR G + + G PQ VH +QP Sbjct: 64 GDDRQELQGCSREPGEPPPGEQEEPRA----AGGGDRVESAGSPQVADGVHSQQP 114 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,797,612 Number of Sequences: 219361 Number of extensions: 1757539 Number of successful extensions: 5648 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 5312 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5642 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5310515667 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
