ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags6b14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK102240.1| Oryza sativa (japonica cultivar-group) cDNA clon... 484 e-133
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 371 2e-99
3dbj|AP004840.3| Oryza sativa (japonica cultivar-group) genomic D... 371 2e-99
4gb|AY111266.1| Zea mays CL2895_1 mRNA sequence 250 5e-63
5gb|BT016766.1| Zea mays clone Contig599 mRNA sequence 94 6e-16
6ref|XM_468194.1| Oryza sativa (japonica cultivar-group), mRNA 70 9e-09
7ref|XM_507019.1| PREDICTED Oryza sativa (japonica cultivar-group... 70 9e-09
8dbj|AP005535.3| Oryza sativa (japonica cultivar-group) genomic D... 70 9e-09
9dbj|AP003984.3| Oryza sativa (japonica cultivar-group) genomic D... 70 9e-09
10dbj|AK112100.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 9e-09
11dbj|AK101046.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 9e-09
12ref|NM_112811.2| Arabidopsis thaliana unknown protein AT3G19240 ... 50 0.009
13dbj|AP000419.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 50 0.009
14emb|Y13632.1|LEY13632 Lycopersicon esculentum mRNA for Dem protein 46 0.13
15gb|AC120364.7| Mus musculus chromosome 8, clone RP24-291F20, com... 42 2.1
16gb|AC158385.4| Mus musculus chromosome 8, clone RP24-247P24, com... 42 2.1
17emb|X69672.1|CCCYPRO4A C.cardunculus cypro4 mRNA 42 2.1
18emb|CR759908.11| Zebrafish DNA sequence from clone DKEYP-38F5 in... 42 2.1
19gb|AC157571.6| Mus musculus BAC clone RP23-111F7 from chromosome... 42 2.1
20gb|AC174598.2| Mus musculus BAC clone RP24-234D9 from chromosome... 42 2.1
21ref|NG_002690.1| Homo sapiens Prader-Willi/Angelman syndrome reg... 40 8.2
22ref|XM_843942.1| PREDICTED: Canis familiaris similar to Gamma-2-... 40 8.2
23gb|AC005165.1| Homo sapiens BAC clone CTA-242H14 from 7, complet... 40 8.2
24gb|AC134265.6| Rattus norvegicus 13 BAC CH230-151K3 (Children's ... 40 8.2
25gb|AC124997.4| Homo sapiens chromosome 15, clone RP11-466L14, co... 40 8.2
26ref|XM_692015.1| PREDICTED: Danio rerio similar to Cyclic-nucleo... 40 8.2
27ref|XM_691428.1| PREDICTED: Danio rerio similar to Cyclic-nucleo... 40 8.2
28gb|AC149491.2| Medicago truncatula chromosome 2 BAC clone mth2-4... 40 8.2
29gb|AC124311.7| Homo sapiens chromosome 15, clone RP11-479F18, co... 40 8.2
30dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 8.2
31gb|AF027770.1|AF027770 Mycobacterium smegmatis FxbA (fxbA) gene,... 40 8.2
32gb|AC004738.1|AC004738 Homo sapiens Chromosome 15q11-q13 PAC clo... 40 8.2
33emb|AL935333.9| Zebrafish DNA sequence from clone CH211-198I18 i... 40 8.2
34emb|AL772397.3| Mouse DNA sequence from clone RP23-95M14 on chro... 40 8.2
35gb|AC034198.7| Homo sapiens chromosome 3 clone RP11-767C1 map 3p... 40 8.2 
>dbj|AK102240.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033088C24, full
            insert sequence
          Length = 2332

 Score =  484 bits (244), Expect = e-133
 Identities = 430/492 (87%)
 Strand = Plus / Minus

                                                                        
Query: 103  gctgaaggaggtgaccttcatgggcgtcgcgacgaccagcggtgcctcggggcagtcgct 162
            |||||||||||||||||||||||| || || || |||||||| ||||| |||  ||||||
Sbjct: 2025 gctgaaggaggtgaccttcatgggggtggccaccaccagcggcgcctccggggtgtcgct 1966

                                                                        
Query: 163  cacgtcgtacttctcgtgcatgaagcggctggcgacgatggactcgtccttggggatcac 222
             ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1965 gacggcgtacttctcgtgcatgaagcggctggcgacgatggactcgtccttggggatcac 1906

                                                                        
Query: 223  cttgtagcagtagcagctcttgagcccctcctggttctggtagcactcgtggtggctgtt 282
            ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 1905 cttgtagcagtagcagctcttgagcccctcctggcactggtagcactcgtggtggctgtt 1846

                                                                        
Query: 283  cttcacctggaggaagttccacaccacgctgtacctcccaacggtcgtcaccagatgcct 342
            |||||||||||||||||||||||||||||||||| |||| || |||| ||||||||||||
Sbjct: 1845 cttcacctggaggaagttccacaccacgctgtacttccccaccgtcgccaccagatgcct 1786

                                                                        
Query: 343  ctcctgcttgccgttatctgtgacccatgaaaacctgccctcacggaacttgctgttgtc 402
            ||||||||| ||||| || || |||||||| ||||| || ||||||||  |  | || | 
Sbjct: 1785 ctcctgcttcccgttctcggtcacccatgagaacctcccttcacggaatatattattctg 1726

                                                                        
Query: 403  ccctgcaagatgagagtggagtgggctgagcttgagcagtcttggtgcagcaattcggtt 462
             || |||||||| || |  || ||| | ||||||||||  ||||| |||||||||| |||
Sbjct: 1725 tccagcaagatgtgaatcaagcggggtcagcttgagcaaccttggggcagcaattctgtt 1666

                                                                        
Query: 463  ccccattcttccaccaaaccctgtcttctccttcccatccttgtcaatgaaaatggtgca 522
             ||||| || || |||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 1665 gcccatcctccctccaaaccctgtcttttccttcccatccttgtcaatgaagatggtgca 1606

                                                                        
Query: 523  aatgagtatcaggtaggtatcagtggttcctagtatccacttcccatcgtacgtcacgtc 582
             || || |||| ||| || ||||| ||||| || |||||||| |||||||| || |||||
Sbjct: 1605 tataagaatcaagtacgtgtcagtagttccgaggatccactttccatcgtaggtgacgtc 1546

                        
Query: 583  cacatgagtaat 594
             |||||||||||
Sbjct: 1545 gacatgagtaat 1534
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  371 bits (187), Expect = 2e-99
 Identities = 238/255 (93%)
 Strand = Plus / Plus

                                                                           
Query: 103     gctgaaggaggtgaccttcatgggcgtcgcgacgaccagcggtgcctcggggcagtcgct 162
               |||||||||||||||||||||||| || || || |||||||| ||||| |||  ||||||
Sbjct: 4334914 gctgaaggaggtgaccttcatgggggtggccaccaccagcggcgcctccggggtgtcgct 4334973

                                                                           
Query: 163     cacgtcgtacttctcgtgcatgaagcggctggcgacgatggactcgtccttggggatcac 222
                ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4334974 gacggcgtacttctcgtgcatgaagcggctggcgacgatggactcgtccttggggatcac 4335033

                                                                           
Query: 223     cttgtagcagtagcagctcttgagcccctcctggttctggtagcactcgtggtggctgtt 282
               ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 4335034 cttgtagcagtagcagctcttgagcccctcctggcactggtagcactcgtggtggctgtt 4335093

                                                                           
Query: 283     cttcacctggaggaagttccacaccacgctgtacctcccaacggtcgtcaccagatgcct 342
               |||||||||||||||||||||||||||||||||| |||| || |||| ||||||||||||
Sbjct: 4335094 cttcacctggaggaagttccacaccacgctgtacttccccaccgtcgccaccagatgcct 4335153

                              
Query: 343     ctcctgcttgccgtt 357
               ||||||||| |||||
Sbjct: 4335154 ctcctgcttcccgtt 4335168



 Score =  143 bits (72), Expect = 8e-31
 Identities = 141/164 (85%)
 Strand = Plus / Plus

                                                                           
Query: 431     agcttgagcagtcttggtgcagcaattcggttccccattcttccaccaaaccctgtcttc 490
               ||||||||||  ||||| |||||||||| ||| ||||| || || |||||||||||||| 
Sbjct: 4336404 agcttgagcaaccttggggcagcaattctgttgcccatcctccctccaaaccctgtcttt 4336463

                                                                           
Query: 491     tccttcccatccttgtcaatgaaaatggtgcaaatgagtatcaggtaggtatcagtggtt 550
               ||||||||||||||||||||||| |||||||| || || |||| ||| || ||||| |||
Sbjct: 4336464 tccttcccatccttgtcaatgaagatggtgcatataagaatcaagtacgtgtcagtagtt 4336523

                                                           
Query: 551     cctagtatccacttcccatcgtacgtcacgtccacatgagtaat 594
               || || |||||||| |||||||| || ||||| |||||||||||
Sbjct: 4336524 ccgaggatccactttccatcgtaggtgacgtcgacatgagtaat 4336567



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 98/119 (82%)
 Strand = Plus / Minus

                                                                            
Query: 173      ttctcgtgcatgaagcggctggcgacgatggactcgtccttggggatcaccttgtagcag 232
                |||||||||||||| |||||| | || ||||| ||||| ||  |||  || ||||| || 
Sbjct: 33568510 ttctcgtgcatgaaacggctgtcaacaatggattcgtctttcaggacaactttgtaacaa 33568451

                                                                           
Query: 233      tagcagctcttgagcccctcctggttctggtagcactcgtggtggctgttcttcacctg 291
                ||||||||||||||||| ||||| |   |||||||||| |||| ||||| |||||||||
Sbjct: 33568450 tagcagctcttgagcccttcctgatcgcggtagcactcatggttgctgtccttcacctg 33568392
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>dbj|AP004840.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0544B02
          Length = 156339

 Score =  371 bits (187), Expect = 2e-99
 Identities = 238/255 (93%)
 Strand = Plus / Plus

                                                                         
Query: 103   gctgaaggaggtgaccttcatgggcgtcgcgacgaccagcggtgcctcggggcagtcgct 162
             |||||||||||||||||||||||| || || || |||||||| ||||| |||  ||||||
Sbjct: 18478 gctgaaggaggtgaccttcatgggggtggccaccaccagcggcgcctccggggtgtcgct 18537

                                                                         
Query: 163   cacgtcgtacttctcgtgcatgaagcggctggcgacgatggactcgtccttggggatcac 222
              ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18538 gacggcgtacttctcgtgcatgaagcggctggcgacgatggactcgtccttggggatcac 18597

                                                                         
Query: 223   cttgtagcagtagcagctcttgagcccctcctggttctggtagcactcgtggtggctgtt 282
             ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 18598 cttgtagcagtagcagctcttgagcccctcctggcactggtagcactcgtggtggctgtt 18657

                                                                         
Query: 283   cttcacctggaggaagttccacaccacgctgtacctcccaacggtcgtcaccagatgcct 342
             |||||||||||||||||||||||||||||||||| |||| || |||| ||||||||||||
Sbjct: 18658 cttcacctggaggaagttccacaccacgctgtacttccccaccgtcgccaccagatgcct 18717

                            
Query: 343   ctcctgcttgccgtt 357
             ||||||||| |||||
Sbjct: 18718 ctcctgcttcccgtt 18732



 Score =  143 bits (72), Expect = 8e-31
 Identities = 141/164 (85%)
 Strand = Plus / Plus

                                                                         
Query: 431   agcttgagcagtcttggtgcagcaattcggttccccattcttccaccaaaccctgtcttc 490
             ||||||||||  ||||| |||||||||| ||| ||||| || || |||||||||||||| 
Sbjct: 19968 agcttgagcaaccttggggcagcaattctgttgcccatcctccctccaaaccctgtcttt 20027

                                                                         
Query: 491   tccttcccatccttgtcaatgaaaatggtgcaaatgagtatcaggtaggtatcagtggtt 550
             ||||||||||||||||||||||| |||||||| || || |||| ||| || ||||| |||
Sbjct: 20028 tccttcccatccttgtcaatgaagatggtgcatataagaatcaagtacgtgtcagtagtt 20087

                                                         
Query: 551   cctagtatccacttcccatcgtacgtcacgtccacatgagtaat 594
             || || |||||||| |||||||| || ||||| |||||||||||
Sbjct: 20088 ccgaggatccactttccatcgtaggtgacgtcgacatgagtaat 20131
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>gb|AY111266.1| Zea mays CL2895_1 mRNA sequence
          Length = 582

 Score =  250 bits (126), Expect = 5e-63
 Identities = 190/210 (90%), Gaps = 1/210 (0%)
 Strand = Plus / Plus

                                                                       
Query: 103 gctgaaggaggtgaccttcatgggcgtcgcgacgaccagcggtgcctcggggcagtcgct 162
           ||||||||| ||||||||||||||||| || || ||||| || ||||| ||| |||||||
Sbjct: 374 gctgaaggaagtgaccttcatgggcgtggccaccaccagtggagcctccggggagtcgct 433

                                                                       
Query: 163 cacgtcgtacttctcgtgcatgaagcggctggcgacgatggactcgtccttggggatcac 222
            ||   |||| | |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 434 gaccgagtacctgtcgtgcatgaagcggctggccacgatggactcgtccttggggatcac 493

                                                                       
Query: 223 cttgtagcagtagcagctcttgagcccctcctggttctggtagcactcgtggtggctgtt 282
           ||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 494 cttgtagcaatagcagctcttcagcccctcctggtactggtagcactcgtggtggctgtt 553

                                         
Query: 283 cttcacctggaggaagttccacaccacgct 312
           ||||||||| |||||| |||||||||||||
Sbjct: 554 cttcacctgcaggaag-tccacaccacgct 582
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>gb|BT016766.1| Zea mays clone Contig599 mRNA sequence
          Length = 1427

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 95/111 (85%)
 Strand = Plus / Minus

                                                                        
Query: 171  acttctcgtgcatgaagcggctggcgacgatggactcgtccttggggatcaccttgtagc 230
            ||||||||||||||||||||||| ||||||| || || |||||| |||  || |||||||
Sbjct: 1051 acttctcgtgcatgaagcggctgtcgacgattgattcatccttgaggacaactttgtagc 992

                                                               
Query: 231  agtagcagctcttgagcccctcctggttctggtagcactcgtggtggctgt 281
            |||||||||||||||| |||| ||| |   |||||||||| |||| |||||
Sbjct: 991  agtagcagctcttgaggccctgctgatcacggtagcactcatggttgctgt 941



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 135/169 (79%)
 Strand = Plus / Minus

                                                                       
Query: 429 tgagcttgagcagtcttggtgcagcaattcggttccccattcttccaccaaaccctgtct 488
           ||||||| || || |||||||||||||| |  ||||||||||  |||| |||||| ||||
Sbjct: 793 tgagcttcagaagccttggtgcagcaatcctattccccattcggccactaaacccagtct 734

                                                                       
Query: 489 tctccttcccatccttgtcaatgaaaatggtgcaaatgagtatcaggtaggtatcagtgg 548
           | || |||||||| |||||  |||| || ||||| || |  |||| ||| || ||||| |
Sbjct: 733 tttctttcccatctttgtccttgaagatagtgcatatcaagatcaagtatgtgtcagttg 674

                                                            
Query: 549 ttcctagtatccacttcccatcgtacgtcacgtccacatgagtaatcgg 597
           |||| || ||||| |||||||| || || || || ||||| ||||||||
Sbjct: 673 ttcccagaatccatttcccatcataagtaacatctacatgtgtaatcgg 625
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>ref|XM_468194.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2103

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 98/119 (82%)
 Strand = Plus / Minus

                                                                        
Query: 173  ttctcgtgcatgaagcggctggcgacgatggactcgtccttggggatcaccttgtagcag 232
            |||||||||||||| |||||| | || ||||| ||||| ||  |||  || ||||| || 
Sbjct: 1837 ttctcgtgcatgaaacggctgtcaacaatggattcgtctttcaggacaactttgtaacaa 1778

                                                                       
Query: 233  tagcagctcttgagcccctcctggttctggtagcactcgtggtggctgttcttcacctg 291
            ||||||||||||||||| ||||| |   |||||||||| |||| ||||| |||||||||
Sbjct: 1777 tagcagctcttgagcccttcctgatcgcggtagcactcatggttgctgtccttcacctg 1719
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>ref|XM_507019.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0054K20.36
            mRNA
          Length = 2225

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 98/119 (82%)
 Strand = Plus / Minus

                                                                        
Query: 173  ttctcgtgcatgaagcggctggcgacgatggactcgtccttggggatcaccttgtagcag 232
            |||||||||||||| |||||| | || ||||| ||||| ||  |||  || ||||| || 
Sbjct: 1840 ttctcgtgcatgaaacggctgtcaacaatggattcgtctttcaggacaactttgtaacaa 1781

                                                                       
Query: 233  tagcagctcttgagcccctcctggttctggtagcactcgtggtggctgttcttcacctg 291
            ||||||||||||||||| ||||| |   |||||||||| |||| ||||| |||||||||
Sbjct: 1780 tagcagctcttgagcccttcctgatcgcggtagcactcatggttgctgtccttcacctg 1722
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>dbj|AP005535.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0054K20
          Length = 153584

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 98/119 (82%)
 Strand = Plus / Minus

                                                                          
Query: 173    ttctcgtgcatgaagcggctggcgacgatggactcgtccttggggatcaccttgtagcag 232
              |||||||||||||| |||||| | || ||||| ||||| ||  |||  || ||||| || 
Sbjct: 143385 ttctcgtgcatgaaacggctgtcaacaatggattcgtctttcaggacaactttgtaacaa 143326

                                                                         
Query: 233    tagcagctcttgagcccctcctggttctggtagcactcgtggtggctgttcttcacctg 291
              ||||||||||||||||| ||||| |   |||||||||| |||| ||||| |||||||||
Sbjct: 143325 tagcagctcttgagcccttcctgatcgcggtagcactcatggttgctgtccttcacctg 143267
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>dbj|AP003984.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1046_F07
          Length = 114184

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 98/119 (82%)
 Strand = Plus / Minus

                                                                         
Query: 173   ttctcgtgcatgaagcggctggcgacgatggactcgtccttggggatcaccttgtagcag 232
             |||||||||||||| |||||| | || ||||| ||||| ||  |||  || ||||| || 
Sbjct: 39181 ttctcgtgcatgaaacggctgtcaacaatggattcgtctttcaggacaactttgtaacaa 39122

                                                                        
Query: 233   tagcagctcttgagcccctcctggttctggtagcactcgtggtggctgttcttcacctg 291
             ||||||||||||||||| ||||| |   |||||||||| |||| ||||| |||||||||
Sbjct: 39121 tagcagctcttgagcccttcctgatcgcggtagcactcatggttgctgtccttcacctg 39063
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>dbj|AK112100.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-F01, full
            insert sequence
          Length = 2225

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 98/119 (82%)
 Strand = Plus / Minus

                                                                        
Query: 173  ttctcgtgcatgaagcggctggcgacgatggactcgtccttggggatcaccttgtagcag 232
            |||||||||||||| |||||| | || ||||| ||||| ||  |||  || ||||| || 
Sbjct: 1840 ttctcgtgcatgaaacggctgtcaacaatggattcgtctttcaggacaactttgtaacaa 1781

                                                                       
Query: 233  tagcagctcttgagcccctcctggttctggtagcactcgtggtggctgttcttcacctg 291
            ||||||||||||||||| ||||| |   |||||||||| |||| ||||| |||||||||
Sbjct: 1780 tagcagctcttgagcccttcctgatcgcggtagcactcatggttgctgtccttcacctg 1722
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>dbj|AK101046.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033005J09, full
            insert sequence
          Length = 2103

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 98/119 (82%)
 Strand = Plus / Minus

                                                                        
Query: 173  ttctcgtgcatgaagcggctggcgacgatggactcgtccttggggatcaccttgtagcag 232
            |||||||||||||| |||||| | || ||||| ||||| ||  |||  || ||||| || 
Sbjct: 1837 ttctcgtgcatgaaacggctgtcaacaatggattcgtctttcaggacaactttgtaacaa 1778

                                                                       
Query: 233  tagcagctcttgagcccctcctggttctggtagcactcgtggtggctgttcttcacctg 291
            ||||||||||||||||| ||||| |   |||||||||| |||| ||||| |||||||||
Sbjct: 1777 tagcagctcttgagcccttcctgatcgcggtagcactcatggttgctgtccttcacctg 1719
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>ref|NM_112811.2| Arabidopsis thaliana unknown protein AT3G19240 mRNA, complete cds
          Length = 2215

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 70/85 (82%)
 Strand = Plus / Minus

                                                                        
Query: 510  tgaaaatggtgcaaatgagtatcaggtaggtatcagtggttcctagtatccacttcccat 569
            |||||| ||||||||| || | || ||| ||||| ||||| || |||||||| |||||||
Sbjct: 1646 tgaaaagggtgcaaataagaaccaagtacgtatctgtggtgcccagtatccatttcccat 1587

                                     
Query: 570  cgtacgtcacgtccacatgagtaat 594
            | || |  ||||||||||| |||||
Sbjct: 1586 cataagaaacgtccacatgtgtaat 1562



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 223  cttgtagcagtagcagctcttgag 246
            |||||||||||| |||||||||||
Sbjct: 1933 cttgtagcagtaacagctcttgag 1910
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>dbj|AP000419.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MVI11
          Length = 81875

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 70/85 (82%)
 Strand = Plus / Minus

                                                                         
Query: 510   tgaaaatggtgcaaatgagtatcaggtaggtatcagtggttcctagtatccacttcccat 569
             |||||| ||||||||| || | || ||| ||||| ||||| || |||||||| |||||||
Sbjct: 60996 tgaaaagggtgcaaataagaaccaagtacgtatctgtggtgcccagtatccatttcccat 60937

                                      
Query: 570   cgtacgtcacgtccacatgagtaat 594
             | || |  ||||||||||| |||||
Sbjct: 60936 cataagaaacgtccacatgtgtaat 60912



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 223   cttgtagcagtagcagctcttgag 246
             |||||||||||| |||||||||||
Sbjct: 61377 cttgtagcagtaacagctcttgag 61354
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>emb|Y13632.1|LEY13632 Lycopersicon esculentum mRNA for Dem protein
          Length = 2105

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 529  tatcaggtaggtatcagtggttcctagtatccacttcccatcgtacgtcacgtccacatg 588
            ||||| ||| |||||||| || || | ||||||||||||||| || || || ||||||||
Sbjct: 1524 tatcaagtaagtatcagttgtccccaatatccacttcccatcataggtaacatccacatg 1465

               
Query: 589  agt 591
            |||
Sbjct: 1464 agt 1462
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>gb|AC120364.7| Mus musculus chromosome 8, clone RP24-291F20, complete sequence
          Length = 193257

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 493    cttcccatccttgtcaatgaa 513
              |||||||||||||||||||||
Sbjct: 140670 cttcccatccttgtcaatgaa 140650
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>gb|AC158385.4| Mus musculus chromosome 8, clone RP24-247P24, complete sequence
          Length = 148656

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 493    cttcccatccttgtcaatgaa 513
              |||||||||||||||||||||
Sbjct: 131184 cttcccatccttgtcaatgaa 131204
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>emb|X69672.1|CCCYPRO4A C.cardunculus cypro4 mRNA
          Length = 1815

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 60/73 (82%)
 Strand = Plus / Minus

                                                                        
Query: 530  atcaggtaggtatcagtggttcctagtatccacttcccatcgtacgtcacgtccacatga 589
            ||||| ||||| |||||||| || | |||||| || ||||| || || || |||||||||
Sbjct: 1069 atcagataggtgtcagtggtgcccaatatccatttaccatcataggtgacatccacatga 1010

                         
Query: 590  gtaatcggcgaac 602
            || || |||||||
Sbjct: 1009 gtgattggcgaac 997
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>emb|CR759908.11| Zebrafish DNA sequence from clone DKEYP-38F5 in linkage group 20,
              complete sequence
          Length = 164351

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 504    tgtcaatgaaaatggtgcaaa 524
              |||||||||||||||||||||
Sbjct: 100088 tgtcaatgaaaatggtgcaaa 100068
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>gb|AC157571.6| Mus musculus BAC clone RP23-111F7 from chromosome 12, complete sequence
          Length = 208117

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 293   aggaagttccacaccacgctg 313
             |||||||||||||||||||||
Sbjct: 90281 aggaagttccacaccacgctg 90261
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>gb|AC174598.2| Mus musculus BAC clone RP24-234D9 from chromosome 12, complete sequence
          Length = 199237

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 293   aggaagttccacaccacgctg 313
             |||||||||||||||||||||
Sbjct: 48691 aggaagttccacaccacgctg 48711
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>ref|NG_002690.1| Homo sapiens Prader-Willi/Angelman syndrome region (PWSAS@) on chromosome
              15
          Length = 755217

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 408    caagatgagagtggagtggg 427
              ||||||||||||||||||||
Sbjct: 733334 caagatgagagtggagtggg 733353
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>ref|XM_843942.1| PREDICTED: Canis familiaris similar to Gamma-2-syntrophin (G2SYN)
           (Syntrophin 5) (SYN5) (LOC607319), mRNA
          Length = 1293

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 87  agcgctggctagacacgctg 106
           ||||||||||||||||||||
Sbjct: 326 agcgctggctagacacgctg 345
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>gb|AC005165.1| Homo sapiens BAC clone CTA-242H14 from 7, complete sequence
          Length = 155164

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 356   ttatctgtgacccatgaaaa 375
             ||||||||||||||||||||
Sbjct: 10306 ttatctgtgacccatgaaaa 10325
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>gb|AC134265.6| Rattus norvegicus 13 BAC CH230-151K3 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 209981

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 478    aaaccctgtcttctccttcccatc 501
              ||||||||| ||||||||||||||
Sbjct: 199102 aaaccctgtgttctccttcccatc 199125
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>gb|AC124997.4| Homo sapiens chromosome 15, clone RP11-466L14, complete sequence
          Length = 179810

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 408    caagatgagagtggagtggg 427
              ||||||||||||||||||||
Sbjct: 157927 caagatgagagtggagtggg 157946
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>ref|XM_692015.1| PREDICTED: Danio rerio similar to Cyclic-nucleotide-gated cation
           channel (LOC568670), mRNA
          Length = 2022

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 231 agtagcagctcttgagcccc 250
           ||||||||||||||||||||
Sbjct: 144 agtagcagctcttgagcccc 163
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>ref|XM_691428.1| PREDICTED: Danio rerio similar to Cyclic-nucleotide-gated cation
           channel (LOC568116), mRNA
          Length = 2145

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 231 agtagcagctcttgagcccc 250
           ||||||||||||||||||||
Sbjct: 144 agtagcagctcttgagcccc 163
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>gb|AC149491.2| Medicago truncatula chromosome 2 BAC clone mth2-46o19, complete
             sequence
          Length = 106587

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 466   cattcttccaccaaaccctg 485
             ||||||||||||||||||||
Sbjct: 51603 cattcttccaccaaaccctg 51622
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>gb|AC124311.7| Homo sapiens chromosome 15, clone RP11-479F18, complete sequence
          Length = 142745

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 408   caagatgagagtggagtggg 427
             ||||||||||||||||||||
Sbjct: 83910 caagatgagagtggagtggg 83929
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 171     acttctcgtgcatgaagcggctgg 194
               |||||||| |||||||||||||||
Sbjct: 1140574 acttctcgcgcatgaagcggctgg 1140597
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>gb|AF027770.1|AF027770 Mycobacterium smegmatis FxbA (fxbA) gene, partial cds; FxbB (fxbB),
             FxbC (fxbC), and FxuD (fxtD) genes, complete cds; and
             unknown genes
          Length = 30683

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 148   ctcggggcagtcgctcacgt 167
             ||||||||||||||||||||
Sbjct: 23320 ctcggggcagtcgctcacgt 23301
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>gb|AC004738.1|AC004738 Homo sapiens Chromosome 15q11-q13 PAC clone pDJ351h23 from the
             Prader-Willi/Angelman Syndrome region, complete sequence
          Length = 147404

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 408   caagatgagagtggagtggg 427
             ||||||||||||||||||||
Sbjct: 72491 caagatgagagtggagtggg 72510
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>emb|AL935333.9| Zebrafish DNA sequence from clone CH211-198I18 in linkage group 5,
              complete sequence
          Length = 199019

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 231    agtagcagctcttgagcccc 250
              ||||||||||||||||||||
Sbjct: 172016 agtagcagctcttgagcccc 172035
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>emb|AL772397.3| Mouse DNA sequence from clone RP23-95M14 on chromosome 4, complete
             sequence
          Length = 230672

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 504   tgtcaatgaaaatggtgcaa 523
             ||||||||||||||||||||
Sbjct: 30546 tgtcaatgaaaatggtgcaa 30527
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>gb|AC034198.7| Homo sapiens chromosome 3 clone RP11-767C1 map 3p, complete sequence
          Length = 169005

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 416    gagtggagtgggctgagcttgagc 439
              ||||||||||| ||||||||||||
Sbjct: 143873 gagtggagtggcctgagcttgagc 143896


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,515,138
Number of Sequences: 3902068
Number of extensions: 4515138
Number of successful extensions: 76968
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76774
Number of HSP's gapped (non-prelim): 194
length of query: 602
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 579
effective length of database: 17,143,297,704
effective search space: 9925969370616
effective search space used: 9925969370616
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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