ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags5m13 |
|---|---|
| Clone Library Name | barley_pub |
>COPA_HELPY (P55989) Copper-transporting ATPase (EC 3.6.3.4)| Length = 745 Score = 32.3 bits (72), Expect = 0.71 Identities = 31/123 (25%), Positives = 49/123 (39%) Frame = +2 Query: 41 NRKNRSEGGQNTLKKDYTAKHRLTSSHTPSLLALITPNICTFFSVLILYQSNPTRGQKIR 220 N+ N E + K Y+ K LT + + F++ ++Y S G + Sbjct: 48 NQTNLDEIFKLIEKLGYSPKKALTKEKKEFFSPNVKLALAVIFTLFVVYLS---MGAMLS 104 Query: 221 QAIVPSSTAAIPHHSNHQLAILVSHPCLKYLHISQPVHRGSLGRNKYPTGNQMRWALMEV 400 +++P S AI +HSN A L L +H LGR+ Y G + W Sbjct: 105 PSLLPESLLAIDNHSNFLNACLQLIGALIVMH---------LGRDFYIQGFKALWHRQPN 155 Query: 401 LSS 409 +SS Sbjct: 156 MSS 158
>CCDC4_HUMAN (Q6ZU67) Coiled-coil domain-containing protein 4| Length = 530 Score = 31.6 bits (70), Expect = 1.2 Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 10/117 (8%) Frame = +1 Query: 10 QSYYTSIESS*PKKQERRRTKHIEKGLYSQTQIN----------QQPYSIFTSLNHT*HL 159 QS + ++ ER+ HI KG++SQT N +Q S F + T L Sbjct: 191 QSMISCVKQEGSSYNERQEHCHIGKGVHSQTSDNVDIEMQYMQRKQQTSAFLRV-FTDSL 249 Query: 160 YIFLSSNTLPIKPNPRSKDSTGHRSLFNSSYSTPQQSSACYTGITSMSEVSSHLTTS 330 +L S + P PNP S GH + + ++P + +T + SE H ++S Sbjct: 250 QNYLLSGSFP-TPNPSSASEYGHLADVDPLSTSPVHTLGGWTS-PATSESHGHPSSS 304
>COPA_HELPJ (Q9ZM69) Copper-transporting ATPase (EC 3.6.3.4)| Length = 745 Score = 30.8 bits (68), Expect = 2.1 Identities = 30/123 (24%), Positives = 46/123 (37%) Frame = +2 Query: 41 NRKNRSEGGQNTLKKDYTAKHRLTSSHTPSLLALITPNICTFFSVLILYQSNPTRGQKIR 220 N N E + K Y+ K L + + F++ ++Y S G + Sbjct: 48 NETNLDEIFKLIEKLGYSPKKTLAEEKKEFFSPNVKLALAVIFTLFVVYLS---MGAMLS 104 Query: 221 QAIVPSSTAAIPHHSNHQLAILVSHPCLKYLHISQPVHRGSLGRNKYPTGNQMRWALMEV 400 +++P S I HHSN A L L +H LGR+ Y G + W Sbjct: 105 PSLLPESLLTINHHSNFLNACLQLIGALIVMH---------LGRDFYIQGFKALWHRQPN 155 Query: 401 LSS 409 +SS Sbjct: 156 MSS 158
>R13L1_ARATH (Q9LRR4) Putative disease resistance RPP13-like protein 1| Length = 1054 Score = 30.8 bits (68), Expect = 2.1 Identities = 18/48 (37%), Positives = 24/48 (50%) Frame = +2 Query: 296 PCLKYLHISQPVHRGSLGRNKYPTGNQMRWALMEVLSSTRSHSFEQHP 439 PCLK LHIS V S+GR Y + Q+R + S + F+ P Sbjct: 813 PCLKELHISGMVGLQSIGRKFYFSDQQLRDQDQQPFRSLETLRFDNLP 860
>ADCY7_HUMAN (P51828) Adenylate cyclase type 7 (EC 4.6.1.1) (Adenylate cyclase| type VII) (ATP pyrophosphate-lyase 7) (Adenylyl cyclase 7) Length = 1080 Score = 30.0 bits (66), Expect = 3.5 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Frame = +2 Query: 35 AHNRKNRSEGGQNTLKKDYTAKHRLTSSHTPSLLA--LITPNICTFFSVLILYQSNPTRG 208 A R +EG + + K++LTS H P LL L+ C ++ Q +P+R Sbjct: 3 AKGRYFLNEGEEGPDQDALYEKYQLTSQHGPLLLTLLLVAATACVALIIIAFSQGDPSRH 62 Query: 209 QKI 217 Q I Sbjct: 63 QAI 65
>COPA3_HELPY (O08462) Copper-transporting ATPase (EC 3.6.3.4)| Length = 745 Score = 29.6 bits (65), Expect = 4.6 Identities = 30/123 (24%), Positives = 47/123 (38%) Frame = +2 Query: 41 NRKNRSEGGQNTLKKDYTAKHRLTSSHTPSLLALITPNICTFFSVLILYQSNPTRGQKIR 220 N N E + K Y+ K L + + F++ ++Y S G + Sbjct: 48 NETNLDEIFKLIEKLGYSPKKTLAEEKKEFFSPNVKLALAVIFTLFVVYLS---MGAMLS 104 Query: 221 QAIVPSSTAAIPHHSNHQLAILVSHPCLKYLHISQPVHRGSLGRNKYPTGNQMRWALMEV 400 +++P S AI +HSN A L L +H LGR+ Y G + W Sbjct: 105 PSLLPESLLAINNHSNFLNACLQLIGALIVMH---------LGRDFYIQGFKALWHRQPN 155 Query: 401 LSS 409 +SS Sbjct: 156 MSS 158
>ADA1A_RABIT (O02824) Alpha-1A adrenergic receptor (Alpha 1A-adrenoceptor)| (Alpha 1A-adrenoreceptor) (Alpha-1C adrenergic receptor) Length = 466 Score = 29.6 bits (65), Expect = 4.6 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%) Frame = -2 Query: 177 RTEKNVQMLGVIKASKDGVWLLVNLCLAV*SFFNVFCPPSLLF---FRL*ALNTCV 19 R +K + LG++ WL L + + SFF F PP +F F L LN+C+ Sbjct: 266 REKKAAKTLGIVVGCFVLCWLPFFLVMPIGSFFPDFKPPETVFKIVFWLGYLNSCI 321
>ADA1A_MOUSE (P97718) Alpha-1A adrenergic receptor (Alpha 1A-adrenoceptor)| (Alpha 1A-adrenoreceptor) (Alpha-1C adrenergic receptor) Length = 466 Score = 29.6 bits (65), Expect = 4.6 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%) Frame = -2 Query: 177 RTEKNVQMLGVIKASKDGVWLLVNLCLAV*SFFNVFCPPSLLF---FRL*ALNTCV 19 R +K + LG++ WL L + + SFF F PP +F F L LN+C+ Sbjct: 266 REKKAAKTLGIVVGCFVLCWLPFFLVMPIGSFFPNFKPPETVFKIVFWLGYLNSCI 321
>KCNQ1_SQUAC (O73925) Potassium voltage-gated channel subfamily KQT member 1| (Voltage-gated potassium channel subunit Kv7.1) (IKs producing slow voltage-gated potassium channel alpha subunit KvLQT1) (KQT-like 1) Length = 660 Score = 29.6 bits (65), Expect = 4.6 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 3/65 (4%) Frame = +1 Query: 46 KKQERRRTKHIEKGLYSQTQINQQPYSIFTSLNH---T*HLYIFLSSNTLPIKPNPRSKD 216 K Q+++R KH + + + + Q + + NH T +Y+ + P+P++K Sbjct: 347 KVQQKQRQKHFNRQIPAAASLIQTSWRCHAAENHESATWKMYVRQPTKFYVASPSPKTKK 406 Query: 217 STGHR 231 S G R Sbjct: 407 SVGKR 411
>YEY8_YEAST (P40095) Hypothetical 63.7 kDa protein in BEM2-NCB1 intergenic| region Length = 573 Score = 29.3 bits (64), Expect = 6.0 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 7/67 (10%) Frame = +1 Query: 178 NTLPIKPNPRSKDST----GHRSLFNSSYSTPQQSSACYTGITS---MSEVSSHLTTSPS 336 N LP+ + S ST + S NSS S+P SS+ + + S M +SS T +PS Sbjct: 417 NKLPLTASVPSSLSTTTDAANSSFINSSISSPAPSSSSSSSLVSRGPMQSISSSPTPAPS 476 Query: 337 RFAGKKQ 357 + K + Sbjct: 477 SGSSKSK 483
>ADCY7_BOVIN (Q29450) Adenylate cyclase type 7 (EC 4.6.1.1) (Adenylate cyclase| type VII) (ATP pyrophosphate-lyase 7) (Adenylyl cyclase 7) Length = 1078 Score = 29.3 bits (64), Expect = 6.0 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Frame = +2 Query: 35 AHNRKNRSEGGQNTLKKDYTAKHRLTSSHTPSLLALITPNI--CTFFSVLILYQSNPTRG 208 A R +EG + + K+RLTS H P LL L+ I CT V+ +P+R Sbjct: 3 AKGRYFLNEGEEGPDQDALYEKYRLTSQHGPLLLMLLLVAIAACTTLIVITFSYGDPSRH 62 Query: 209 QKI 217 + + Sbjct: 63 RAV 65
>WSC4_YEAST (P38739) Cell wall integrity and stress response component 4| precursor Length = 605 Score = 28.9 bits (63), Expect = 7.8 Identities = 19/86 (22%), Positives = 42/86 (48%) Frame = +1 Query: 79 EKGLYSQTQINQQPYSIFTSLNHT*HLYIFLSSNTLPIKPNPRSKDSTGHRSLFNSSYST 258 +K L+ + Q P S S+ + +++SS+++ + D+T S+ +T Sbjct: 101 DKDLFGYIYLGQTPLSSVQSVETSTESSVYVSSSSITSSSSTSIVDTTTISPTLTSTSTT 160 Query: 259 PQQSSACYTGITSMSEVSSHLTTSPS 336 P +++ T T ++++S L T+ S Sbjct: 161 PLTTAS--TSTTPSTDITSALPTTTS 184
>YJI3_YEAST (P47030) Hypothetical 68.8 kDa protein in EXO70-ARP4 intergenic| region Length = 604 Score = 28.9 bits (63), Expect = 7.8 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 4/49 (8%) Frame = +2 Query: 188 QSNPTRGQKIRQAIVPSSTAAIP----HHSNHQLAILVSHPCLKYLHIS 322 +S +G K A+V SST+ +P HH +HQL SH + H S Sbjct: 372 RSKIKKGLKTTAAVVGSSTSVLPFPHHHHHHHQLHNPNSHHLHTHHHTS 420 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,218,186 Number of Sequences: 219361 Number of extensions: 1662688 Number of successful extensions: 5126 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 4614 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5121 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3465624120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
