ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5m13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY146587.1| Triticum turgidum subsp. durum BAC 107G22, comple... 450 e-123
2ref|XM_473807.1| Oryza sativa (japonica cultivar-group), predic... 178 1e-41
3dbj|AK068251.1| Oryza sativa (japonica cultivar-group) cDNA clon... 178 1e-41
4gb|AY106118.1| Zea mays PCO078446 mRNA sequence 157 4e-35
5emb|AL662968.3|OSJN00168 Oryza sativa genomic DNA, chromosome 4,... 141 2e-30
6dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 141 2e-30
7gb|AY596559.1| Saccharum officinarum clone SCVPLB1018C01, comple... 139 1e-29
8ref|XM_480815.1| Oryza sativa (japonica cultivar-group), mRNA 123 6e-25
9ref|XM_507171.1| PREDICTED Oryza sativa (japonica cultivar-group... 123 6e-25
10dbj|AK069639.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 6e-25
11dbj|AK060252.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 6e-25
12gb|BT017922.1| Zea mays clone EL01N0519C02.c mRNA sequence 111 2e-21
13dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 94 5e-16
14dbj|AP004559.2| Oryza sativa (japonica cultivar-group) genomic D... 94 5e-16
15dbj|AP005410.3| Oryza sativa (japonica cultivar-group) genomic D... 94 5e-16
16ref|NM_118355.1| Arabidopsis thaliana cysteine-type endopeptidas... 50 0.007
17gb|AY140104.1| Arabidopsis thaliana unknown protein mRNA, comple... 50 0.007
18gb|BT006592.1| Arabidopsis thaliana At4g22290 mRNA, complete cds 50 0.007
19emb|BX827002.1|CNS0A4AI Arabidopsis thaliana Full-length cDNA Co... 50 0.007
20emb|BX827259.1|CNS0A2E0 Arabidopsis thaliana Full-length cDNA Co... 50 0.007
21gb|BT013729.1| Lycopersicon esculentum clone 132589F, mRNA sequence 44 0.43
22emb|AJ833968.1| Zea mays partial mRNA for hypothetical protein (... 44 0.43
23emb|CT573215.2| Medicago truncatula chromosome 5 clone mth2-51h2... 44 0.43
24gb|AF207550.3| Homo sapiens chromosome X multiple clones map p11... 42 1.7
25gb|AC136611.2| Homo sapiens chromosome 16 clone RP11-159J3, comp... 42 1.7
26gb|AC009030.10| Homo sapiens chromosome 16 clone RP11-13G6, comp... 42 1.7
27gb|AC148226.7| Medicago truncatula clone mth2-5i20, complete seq... 42 1.7
28emb|BX826707.1|CNS0A432 Arabidopsis thaliana Full-length cDNA Co... 42 1.7
29dbj|AB042425.1| Homo sapiens Pim-2h, hUGT2, hUGT1, genes for pim... 42 1.7
30gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete... 40 6.7
31gb|AC164170.7| Mus musculus 10 BAC RP24-419C12 (Roswell Park Can... 40 6.7
32gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 40 6.7
33gb|AC124757.4| Mus musculus BAC clone RP23-116P5 from 8, complet... 40 6.7
34emb|CR391986.5| Zebrafish DNA sequence from clone CH211-195O20 i... 40 6.7
35emb|CR709912.2|CNS0GAPW Tetraodon nigroviridis full-length cDNA 40 6.7
36gb|AC136986.6| Mus musculus chromosome 12, clone RP23-187H12, co... 40 6.7
37emb|BX323802.24| Zebrafish DNA sequence from clone DKEY-104I9 in... 40 6.7
38emb|AL390731.9| Human DNA sequence from clone RP11-506F17 on chr... 40 6.7
39emb|AL353810.9| Human DNA sequence from clone RP11-261H15 on chr... 40 6.7
40emb|BX572093.1| Prochlorococcus marinus MED4 complete genome; se... 40 6.7
41gb|AY158230.1| Mus musculus strain 129/SvJ chromosome 10 clone 1... 40 6.7
42gb|AE014179.1| Mus musculus piebald deletion region section 7 of... 40 6.7
43emb|BX323037.10| Zebrafish DNA sequence from clone DKEYP-8B6 in ... 40 6.7
44gb|AC103691.2| Homo sapiens chromosome 15, clone RP11-959H21, co... 40 6.7
45gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome 40 6.7
46ref|XM_689459.1| PREDICTED: Danio rerio similar to ryanodine rec... 40 6.7
47emb|BX088525.4| Zebrafish DNA sequence from clone DKEYP-51F8 in ... 40 6.7
48emb|AL928892.6| Zebrafish DNA sequence from clone DKEY-216E6, co... 40 6.7
49gb|AC111039.13| Mus musculus chromosome 5, clone RP24-463M5, com... 40 6.7
50emb|CT010449.10| Mouse DNA sequence from clone RP23-347O24 on ch... 40 6.7
51gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome 40 6.7
52gb|AC135119.4| Mus musculus BAC clone RP24-535H19 from 14, compl... 40 6.7
53dbj|AP006113.1| Lotus japonicus genomic DNA, chromosome 4, clone... 40 6.7
54dbj|AP004946.1| Lotus japonicus genomic DNA, chromosome , clone:... 40 6.7
55gb|AC171336.3| Mus musculus BAC RP24-286O17 (Roswell Park Cance... 40 6.7 
>gb|AY146587.1| Triticum turgidum subsp. durum BAC 107G22, complete sequence
          Length = 142018

 Score =  450 bits (227), Expect = e-123
 Identities = 245/251 (97%)
 Strand = Plus / Minus

                                                                        
Query: 1    gcccaaaagcaatcatattacacaagtattgagagctcataaccgaaaaaacaggagcga 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1403 gcccaaaagcaatcatattacacaagtattgagagctcataaccgaaaaaacaggagcga 1344

                                                                        
Query: 61   aggaggacaaaacacattgaaaaaggactatacagccaaacacagattaaccagcagcca 120
            ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1343 aggagaacaaaacacattgaaaaaggactatacagccaaacacagattacccagcagcca 1284

                                                                        
Query: 121  tactccatctttactagccttaatcacacctaacatttgtacatttttctcagttctaat 180
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1283 tactccatctttactagccttaatcacacctagcatttgtacatttttctcagttctaat 1224

                                                                        
Query: 181  actctaccaatcaaacccaacccgaggtcaaaagattcgacaggccatcgttccctcttc 240
            |||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 1223 actctaccaatcaagcccaacccgaggtcaaaagattcgacaggccaacgttcactcttc 1164

                       
Query: 241  aacagcagcta 251
            |||||||||||
Sbjct: 1163 aacagcagcta 1153



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                    
Query: 319  ctcacaaccagtccatcgaggttcgctgggaagaaacaagtaccccactggcaacc 374
            ||||| ||||||||||| || |||||||||||||||||| | ||||||||||||||
Sbjct: 1152 ctcacgaccagtccatcaagtttcgctgggaagaaacaacttccccactggcaacc 1097
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>ref|XM_473807.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1449

 Score =  178 bits (90), Expect = 1e-41
 Identities = 123/134 (91%)
 Strand = Plus / Minus

                                                                        
Query: 362  cccactggcaaccagatgagatgggctctgatggaggtactatcatcaacacgctctcat 421
            |||||||||||||||  ||||||||||||| |||||| || |||||||||||| | ||||
Sbjct: 1366 cccactggcaaccagtagagatgggctctggtggaggaacaatcatcaacacgttgtcat 1307

                                                                        
Query: 422  tcttttgaacaacacccatcacactcacagtgctgccttccttgatgtatccttctttta 481
            ||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 1306 tcttttgaacaacccccatcacactcacggtgctgccttccttaatgtatccttctttta 1247

                          
Query: 482  ggcgcattttccga 495
            |||||||| |||||
Sbjct: 1246 ggcgcattatccga 1233
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>dbj|AK068251.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013145H18, full
            insert sequence
          Length = 2228

 Score =  178 bits (90), Expect = 1e-41
 Identities = 123/134 (91%)
 Strand = Plus / Minus

                                                                        
Query: 362  cccactggcaaccagatgagatgggctctgatggaggtactatcatcaacacgctctcat 421
            |||||||||||||||  ||||||||||||| |||||| || |||||||||||| | ||||
Sbjct: 1799 cccactggcaaccagtagagatgggctctggtggaggaacaatcatcaacacgttgtcat 1740

                                                                        
Query: 422  tcttttgaacaacacccatcacactcacagtgctgccttccttgatgtatccttctttta 481
            ||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 1739 tcttttgaacaacccccatcacactcacggtgctgccttccttaatgtatccttctttta 1680

                          
Query: 482  ggcgcattttccga 495
            |||||||| |||||
Sbjct: 1679 ggcgcattatccga 1666



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                              
Query: 130  tttactagccttaatcacacctaacatttgtacatttttctcagttctaa 179
            ||||||| |||||||||  || ||||||||||||||||||||| ||||||
Sbjct: 2016 tttactaaccttaatcatccccaacatttgtacatttttctcaattctaa 1967
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>gb|AY106118.1| Zea mays PCO078446 mRNA sequence
          Length = 988

 Score =  157 bits (79), Expect = 4e-35
 Identities = 175/207 (84%)
 Strand = Plus / Minus

                                                                       
Query: 283 actggtatcacatccatgtctgaagtatcttcacatctcacaaccagtccatcgaggttc 342
           |||||||||||||| || | |||||||||||| ||||| | ||| || ||||| ||||| 
Sbjct: 715 actggtatcacatcaatatttgaagtatcttcgcatcttaaaacaagcccatcaaggttg 656

                                                                       
Query: 343 gctgggaagaaacaagtaccccactggcaaccagatgagatgggctctgatggaggtact 402
           | |||||  |  ||  |  ||||||| ||||||| ||||||||||||||||||||| || 
Sbjct: 655 gttgggagaacgcacttggcccactgacaaccagttgagatgggctctgatggaggaaca 596

                                                                       
Query: 403 atcatcaacacgctctcattcttttgaacaacacccatcacactcacagtgctgccttcc 462
           |||||||  ||  | |||||| |||| ||||| |||||||||||||||||||| ||||||
Sbjct: 595 atcatcagaacattgtcattcctttggacaacccccatcacactcacagtgctaccttcc 536

                                      
Query: 463 ttgatgtatccttcttttaggcgcatt 489
           |||||||||||||||||||||||||||
Sbjct: 535 ttgatgtatccttcttttaggcgcatt 509
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>emb|AL662968.3|OSJN00168 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0035M09,
             complete sequence
          Length = 152732

 Score =  141 bits (71), Expect = 2e-30
 Identities = 101/111 (90%)
 Strand = Plus / Plus

                                                                         
Query: 362   cccactggcaaccagatgagatgggctctgatggaggtactatcatcaacacgctctcat 421
             |||||||||||||||  ||||||||||||| |||||| || |||||||||||| | ||||
Sbjct: 80297 cccactggcaaccagtagagatgggctctggtggaggaacaatcatcaacacgttgtcat 80356

                                                                
Query: 422   tcttttgaacaacacccatcacactcacagtgctgccttccttgatgtatc 472
             ||||||||||||| |||||||||||||| |||||||||||||| |||||||
Sbjct: 80357 tcttttgaacaacccccatcacactcacggtgctgccttccttaatgtatc 80407



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                               
Query: 130   tttactagccttaatcacacctaacatttgtacatttttctcagttctaa 179
             ||||||| |||||||||  || ||||||||||||||||||||| ||||||
Sbjct: 80080 tttactaaccttaatcatccccaacatttgtacatttttctcaattctaa 80129



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 472   ccttcttttaggcgcattttccga 495
             |||||||||||||||||| |||||
Sbjct: 80522 ccttcttttaggcgcattatccga 80545
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  141 bits (71), Expect = 2e-30
 Identities = 101/111 (90%)
 Strand = Plus / Plus

                                                                            
Query: 362      cccactggcaaccagatgagatgggctctgatggaggtactatcatcaacacgctctcat 421
                |||||||||||||||  ||||||||||||| |||||| || |||||||||||| | ||||
Sbjct: 30676566 cccactggcaaccagtagagatgggctctggtggaggaacaatcatcaacacgttgtcat 30676625

                                                                   
Query: 422      tcttttgaacaacacccatcacactcacagtgctgccttccttgatgtatc 472
                ||||||||||||| |||||||||||||| |||||||||||||| |||||||
Sbjct: 30676626 tcttttgaacaacccccatcacactcacggtgctgccttccttaatgtatc 30676676



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                                  
Query: 130      tttactagccttaatcacacctaacatttgtacatttttctcagttctaa 179
                ||||||| |||||||||  || ||||||||||||||||||||| ||||||
Sbjct: 30676349 tttactaaccttaatcatccccaacatttgtacatttttctcaattctaa 30676398



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 472      ccttcttttaggcgcattttccga 495
                |||||||||||||||||| |||||
Sbjct: 30676791 ccttcttttaggcgcattatccga 30676814
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>gb|AY596559.1| Saccharum officinarum clone SCVPLB1018C01, complete sequence
          Length = 2065

 Score =  139 bits (70), Expect = 1e-29
 Identities = 118/134 (88%)
 Strand = Plus / Minus

                                                                        
Query: 362  cccactggcaaccagatgagatgggctctgatggaggtactatcatcaacacgctctcat 421
            ||||||| ||||||| |||||||||||| |||||||| || |||||||  ||  | || |
Sbjct: 1713 cccactgacaaccagttgagatgggctccgatggaggaacaatcatcagaacattgtcgt 1654

                                                                        
Query: 422  tcttttgaacaacacccatcacactcacagtgctgccttccttgatgtatccttctttta 481
            || |||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1653 tcctttggacaacccccatcacactcacagtgctaccttccttgatgtatccttctttta 1594

                          
Query: 482  ggcgcattttccga 495
            |||||||| |||||
Sbjct: 1593 ggcgcattgtccga 1580



 Score = 48.1 bits (24), Expect = 0.028
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 141  taatcacacctaacatttgtacatttttctca 172
            |||||||||| |||||||| ||||||||||||
Sbjct: 1904 taatcacacccaacatttgcacatttttctca 1873
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>ref|XM_480815.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1786

 Score =  123 bits (62), Expect = 6e-25
 Identities = 116/134 (86%)
 Strand = Plus / Minus

                                                                        
Query: 362  cccactggcaaccagatgagatgggctctgatggaggtactatcatcaacacgctctcat 421
            |||||||||| ||||  |||||||| || |||||||| || |||||||||||| | || |
Sbjct: 1405 cccactggcagccagtggagatgggttccgatggaggaacaatcatcaacacgttgtcgt 1346

                                                                        
Query: 422  tcttttgaacaacacccatcacactcacagtgctgccttccttgatgtatccttctttta 481
            || |||||||||| ||||| |||||||| |||||||| ||||| |||||||||||||| |
Sbjct: 1345 tcctttgaacaacccccataacactcaccgtgctgccctccttaatgtatccttctttca 1286

                          
Query: 482  ggcgcattttccga 495
            |||||||| |||||
Sbjct: 1285 ggcgcattatccga 1272
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>ref|XM_507171.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0038P10.32
            mRNA
          Length = 2080

 Score =  123 bits (62), Expect = 6e-25
 Identities = 116/134 (86%)
 Strand = Plus / Minus

                                                                        
Query: 362  cccactggcaaccagatgagatgggctctgatggaggtactatcatcaacacgctctcat 421
            |||||||||| ||||  |||||||| || |||||||| || |||||||||||| | || |
Sbjct: 1702 cccactggcagccagtggagatgggttccgatggaggaacaatcatcaacacgttgtcgt 1643

                                                                        
Query: 422  tcttttgaacaacacccatcacactcacagtgctgccttccttgatgtatccttctttta 481
            || |||||||||| ||||| |||||||| |||||||| ||||| |||||||||||||| |
Sbjct: 1642 tcctttgaacaacccccataacactcaccgtgctgccctccttaatgtatccttctttca 1583

                          
Query: 482  ggcgcattttccga 495
            |||||||| |||||
Sbjct: 1582 ggcgcattatccga 1569
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>dbj|AK069639.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023026D01, full
            insert sequence
          Length = 2080

 Score =  123 bits (62), Expect = 6e-25
 Identities = 116/134 (86%)
 Strand = Plus / Minus

                                                                        
Query: 362  cccactggcaaccagatgagatgggctctgatggaggtactatcatcaacacgctctcat 421
            |||||||||| ||||  |||||||| || |||||||| || |||||||||||| | || |
Sbjct: 1702 cccactggcagccagtggagatgggttccgatggaggaacaatcatcaacacgttgtcgt 1643

                                                                        
Query: 422  tcttttgaacaacacccatcacactcacagtgctgccttccttgatgtatccttctttta 481
            || |||||||||| ||||| |||||||| |||||||| ||||| |||||||||||||| |
Sbjct: 1642 tcctttgaacaacccccataacactcaccgtgctgccctccttaatgtatccttctttca 1583

                          
Query: 482  ggcgcattttccga 495
            |||||||| |||||
Sbjct: 1582 ggcgcattatccga 1569
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>dbj|AK060252.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-004-D04, full
            insert sequence
          Length = 1786

 Score =  123 bits (62), Expect = 6e-25
 Identities = 116/134 (86%)
 Strand = Plus / Minus

                                                                        
Query: 362  cccactggcaaccagatgagatgggctctgatggaggtactatcatcaacacgctctcat 421
            |||||||||| ||||  |||||||| || |||||||| || |||||||||||| | || |
Sbjct: 1405 cccactggcagccagtggagatgggttccgatggaggaacaatcatcaacacgttgtcgt 1346

                                                                        
Query: 422  tcttttgaacaacacccatcacactcacagtgctgccttccttgatgtatccttctttta 481
            || |||||||||| ||||| |||||||| |||||||| ||||| |||||||||||||| |
Sbjct: 1345 tcctttgaacaacccccataacactcaccgtgctgccctccttaatgtatccttctttca 1286

                          
Query: 482  ggcgcattttccga 495
            |||||||| |||||
Sbjct: 1285 ggcgcattatccga 1272
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>gb|BT017922.1| Zea mays clone EL01N0519C02.c mRNA sequence
          Length = 1074

 Score =  111 bits (56), Expect = 2e-21
 Identities = 110/128 (85%)
 Strand = Plus / Minus

                                                                       
Query: 361 ccccactggcaaccagatgagatgggctctgatggaggtactatcatcaacacgctctca 420
           ||||||||||| ||||  ||||||||||| | |||||| || ||||||| |||| |||| 
Sbjct: 535 ccccactggcagccagtggagatgggctcggctggaggaacgatcatcagcacgttctcg 476

                                                                       
Query: 421 ttcttttgaacaacacccatcacactcacagtgctgccttccttgatgtatccttctttt 480
           ||| | ||||| || |||||||| ||||| |||||||| |||||||||||||||||||| 
Sbjct: 475 ttcctctgaacgacgcccatcacgctcacggtgctgccctccttgatgtatccttctttg 416

                   
Query: 481 aggcgcat 488
           ||||||||
Sbjct: 415 aggcgcat 408
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 95/111 (85%)
 Strand = Plus / Minus

                                                                           
Query: 362     cccactggcaaccagatgagatgggctctgatggaggtactatcatcaacacgctctcat 421
               |||||||||| ||||  |||||||| || |||||||| || |||||||||||| | || |
Sbjct: 7937582 cccactggcagccagtggagatgggttccgatggaggaacaatcatcaacacgttgtcgt 7937523

                                                                  
Query: 422     tcttttgaacaacacccatcacactcacagtgctgccttccttgatgtatc 472
               || |||||||||| ||||| |||||||| |||||||| ||||| |||||||
Sbjct: 7937522 tcctttgaacaacccccataacactcaccgtgctgccctccttaatgtatc 7937472



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 77/94 (81%)
 Strand = Plus / Plus

                                                                           
Query: 379     gagatgggctctgatggaggtactatcatcaacacgctctcattcttttgaacaacaccc 438
               |||||||| || |||||| | || ||||||||||| || || ||| |||||||||| |||
Sbjct: 7913513 gagatgggttcagatggatgaacaatcatcaacacactgtcgttcctttgaacaaccccc 7913572

                                                 
Query: 439     atcacactcacagtgctgccttccttgatgtatc 472
               || | ||  ||  ||||||| |||||||||||||
Sbjct: 7913573 ataatacaaactctgctgccctccttgatgtatc 7913606
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>dbj|AP004559.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
            clone:P0461A06
          Length = 136384

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 95/111 (85%)
 Strand = Plus / Minus

                                                                        
Query: 362  cccactggcaaccagatgagatgggctctgatggaggtactatcatcaacacgctctcat 421
            |||||||||| ||||  |||||||| || |||||||| || |||||||||||| | || |
Sbjct: 9752 cccactggcagccagtggagatgggttccgatggaggaacaatcatcaacacgttgtcgt 9693

                                                               
Query: 422  tcttttgaacaacacccatcacactcacagtgctgccttccttgatgtatc 472
            || |||||||||| ||||| |||||||| |||||||| ||||| |||||||
Sbjct: 9692 tcctttgaacaacccccataacactcaccgtgctgccctccttaatgtatc 9642
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>dbj|AP005410.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0038P10
          Length = 148527

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 95/111 (85%)
 Strand = Plus / Minus

                                                                          
Query: 362    cccactggcaaccagatgagatgggctctgatggaggtactatcatcaacacgctctcat 421
              |||||||||| ||||  |||||||| || |||||||| || |||||||||||| | || |
Sbjct: 127473 cccactggcagccagtggagatgggttccgatggaggaacaatcatcaacacgttgtcgt 127414

                                                                 
Query: 422    tcttttgaacaacacccatcacactcacagtgctgccttccttgatgtatc 472
              || |||||||||| ||||| |||||||| |||||||| ||||| |||||||
Sbjct: 127413 tcctttgaacaacccccataacactcaccgtgctgccctccttaatgtatc 127363



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 77/94 (81%)
 Strand = Plus / Plus

                                                                          
Query: 379    gagatgggctctgatggaggtactatcatcaacacgctctcattcttttgaacaacaccc 438
              |||||||| || |||||| | || ||||||||||| || || ||| |||||||||| |||
Sbjct: 103404 gagatgggttcagatggatgaacaatcatcaacacactgtcgttcctttgaacaaccccc 103463

                                                
Query: 439    atcacactcacagtgctgccttccttgatgtatc 472
              || | ||  ||  ||||||| |||||||||||||
Sbjct: 103464 ataatacaaactctgctgccctccttgatgtatc 103497
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>ref|NM_118355.1| Arabidopsis thaliana cysteine-type endopeptidase/ ubiquitin
            thiolesterase AT4G22290 mRNA, complete cds
          Length = 2925

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                 
Query: 436  cccatcacactcacagtgctgccttccttgatgtatccttcttttaggcgcat 488
            |||||||| ||||| ||||| ||||| || |||||||||||||| || |||||
Sbjct: 1181 cccatcacgctcactgtgcttccttcttttatgtatccttctttgagacgcat 1129
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>gb|AY140104.1| Arabidopsis thaliana unknown protein mRNA, complete cds
          Length = 1717

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                 
Query: 436  cccatcacactcacagtgctgccttccttgatgtatccttcttttaggcgcat 488
            |||||||| ||||| ||||| ||||| || |||||||||||||| || |||||
Sbjct: 1267 cccatcacgctcactgtgcttccttcttttatgtatccttctttgagacgcat 1215
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>gb|BT006592.1| Arabidopsis thaliana At4g22290 mRNA, complete cds
          Length = 1338

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                 
Query: 436  cccatcacactcacagtgctgccttccttgatgtatccttcttttaggcgcat 488
            |||||||| ||||| ||||| ||||| || |||||||||||||| || |||||
Sbjct: 1181 cccatcacgctcactgtgcttccttcttttatgtatccttctttgagacgcat 1129
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>emb|BX827002.1|CNS0A4AI Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB85ZC10 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1702

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                 
Query: 436  cccatcacactcacagtgctgccttccttgatgtatccttcttttaggcgcat 488
            |||||||| ||||| ||||| ||||| || |||||||||||||| || |||||
Sbjct: 1250 cccatcacgctcactgtgcttccttcttttatgtatccttctttgagacgcat 1198
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>emb|BX827259.1|CNS0A2E0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS2ZA05 of Adult vegetative tissue of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1669

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                 
Query: 436  cccatcacactcacagtgctgccttccttgatgtatccttcttttaggcgcat 488
            |||||||| ||||| ||||| ||||| || |||||||||||||| || |||||
Sbjct: 1241 cccatcacgctcactgtgcttccttcttttatgtatccttctttgagacgcat 1189
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>gb|BT013729.1| Lycopersicon esculentum clone 132589F, mRNA sequence
          Length = 1921

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                              
Query: 430  acaacacccatcacactcacagtgctgccttccttgatgtatccttcttt 479
            ||||| ||||| |||||||||||||| ||||| || || || ||||||||
Sbjct: 1426 acaactcccattacactcacagtgctaccttcttttatatacccttcttt 1377
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>emb|AJ833968.1| Zea mays partial mRNA for hypothetical protein (cuc3 gene), and 3'
           UTR
          Length = 1300

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 267 atcatcagcttgctatactggt 288
           ||||||||||||||||||||||
Sbjct: 509 atcatcagcttgctatactggt 488
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>emb|CT573215.2| Medicago truncatula chromosome 5 clone mth2-51h23, COMPLETE SEQUENCE
          Length = 121342

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 58    cgaaggaggacaaaacacattgaaaa 83
             |||| |||||||||||||||||||||
Sbjct: 86522 cgaatgaggacaaaacacattgaaaa 86497
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>gb|AF207550.3| Homo sapiens chromosome X multiple clones map p11.23, complete sequence
          Length = 128713

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 16    tattacacaagtattgagagctcat 40
             ||||||| |||||||||||||||||
Sbjct: 25917 tattacataagtattgagagctcat 25893
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>gb|AC136611.2| Homo sapiens chromosome 16 clone RP11-159J3, complete sequence
          Length = 158324

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 155   atttgtacatttttctcagtt 175
             |||||||||||||||||||||
Sbjct: 93624 atttgtacatttttctcagtt 93604
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>gb|AC009030.10| Homo sapiens chromosome 16 clone RP11-13G6, complete sequence
          Length = 189379

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 155  atttgtacatttttctcagtt 175
            |||||||||||||||||||||
Sbjct: 9031 atttgtacatttttctcagtt 9011
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>gb|AC148226.7| Medicago truncatula clone mth2-5i20, complete sequence
          Length = 84259

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 63   gaggacaaaacacattgaaaa 83
            |||||||||||||||||||||
Sbjct: 3793 gaggacaaaacacattgaaaa 3773
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>emb|BX826707.1|CNS0A432 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB56ZG04 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1673

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                 
Query: 436  cccatcacactcacagtgctgccttccttgatgtatccttcttttaggcgcat 488
            |||||||| ||||| || || ||||| || |||||||||||||| || |||||
Sbjct: 1242 cccatcacgctcactgttcttccttcttttatgtatccttctttgagacgcat 1190
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>dbj|AB042425.1| Homo sapiens Pim-2h, hUGT2, hUGT1, genes for pim-2 protooncogene
            homolog, UDP-galactose transporter 1, UDP-galactose
            transporter 2, complete cds
          Length = 19185

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 16   tattacacaagtattgagagctcat 40
            ||||||| |||||||||||||||||
Sbjct: 3202 tattacataagtattgagagctcat 3226
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>gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete genome
          Length = 2201561

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 231    ttccctcttcaacagcagct 250
              ||||||||||||||||||||
Sbjct: 642143 ttccctcttcaacagcagct 642162
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>gb|AC164170.7| Mus musculus 10 BAC RP24-419C12 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 158496

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 154    catttgtacatttttctcag 173
              ||||||||||||||||||||
Sbjct: 132989 catttgtacatttttctcag 132970
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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 308     tatcttcacatctcacaacc 327
               ||||||||||||||||||||
Sbjct: 4508065 tatcttcacatctcacaacc 4508084
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>gb|AC124757.4| Mus musculus BAC clone RP23-116P5 from 8, complete sequence
          Length = 210427

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 155    atttgtacatttttctcagt 174
              ||||||||||||||||||||
Sbjct: 201488 atttgtacatttttctcagt 201469
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>emb|CR391986.5| Zebrafish DNA sequence from clone CH211-195O20 in linkage group 17,
             complete sequence
          Length = 131805

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 67    acaaaacacattgaaaaaggactataca 94
             ||||||||||||| ||||| ||||||||
Sbjct: 89310 acaaaacacattgtaaaagcactataca 89283
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>emb|CR709912.2|CNS0GAPW Tetraodon nigroviridis full-length cDNA
          Length = 580

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 91  tacagccaaacacagattaaccag 114
           ||||||||||||||||| ||||||
Sbjct: 376 tacagccaaacacagataaaccag 399
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>gb|AC136986.6| Mus musculus chromosome 12, clone RP23-187H12, complete sequence
          Length = 206332

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 148    acctaacatttgtacatttt 167
              ||||||||||||||||||||
Sbjct: 147443 acctaacatttgtacatttt 147424
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>emb|BX323802.24| Zebrafish DNA sequence from clone DKEY-104I9 in linkage group 10,
              complete sequence
          Length = 109743

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 86     gactatacagccaaacacag 105
              ||||||||||||||||||||
Sbjct: 108878 gactatacagccaaacacag 108859
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>emb|AL390731.9| Human DNA sequence from clone RP11-506F17 on chromosome 13 Contains a
              thioredoxin-like 32kDa (TXNL) pseudogene, complete sequence
          Length = 166000

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 308    tatcttcacatctcacaaccagtc 331
              ||||||||||||||| ||||||||
Sbjct: 120070 tatcttcacatctcaaaaccagtc 120093
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>emb|AL353810.9| Human DNA sequence from clone RP11-261H15 on chromosome 9, complete
              sequence
          Length = 111330

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 238    ttcaacagcagctattccac 257
              ||||||||||||||||||||
Sbjct: 108511 ttcaacagcagctattccac 108492
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>emb|BX572093.1| Prochlorococcus marinus MED4 complete genome; segment 4/5
          Length = 348986

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 231    ttccctcttcaacagcagct 250
              ||||||||||||||||||||
Sbjct: 327198 ttccctcttcaacagcagct 327217
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>gb|AY158230.1| Mus musculus strain 129/SvJ chromosome 10 clone 10A1 unknown genomic
             sequence
          Length = 77891

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 154   catttgtacatttttctcag 173
             ||||||||||||||||||||
Sbjct: 67710 catttgtacatttttctcag 67691
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>gb|AE014179.1| Mus musculus piebald deletion region section 7 of 11 of the complete
              sequence
          Length = 400029

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 287    gtatcacatccatgtctgaa 306
              ||||||||||||||||||||
Sbjct: 183834 gtatcacatccatgtctgaa 183815
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>emb|BX323037.10| Zebrafish DNA sequence from clone DKEYP-8B6 in linkage group 24,
             complete sequence
          Length = 173818

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 86    gactatacagccaaacacag 105
             ||||||||||||||||||||
Sbjct: 41320 gactatacagccaaacacag 41301
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>gb|AC103691.2| Homo sapiens chromosome 15, clone RP11-959H21, complete sequence
          Length = 82781

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 351   gaaacaagtaccccactggc 370
             ||||||||||||||||||||
Sbjct: 44013 gaaacaagtaccccactggc 44032
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>gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome
          Length = 2679306

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 138    ccttaatcacacctaacatt 157
              ||||||||||||||||||||
Sbjct: 600468 ccttaatcacacctaacatt 600449
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>ref|XM_689459.1| PREDICTED: Danio rerio similar to ryanodine receptor 1, skeletal
           muscle (LOC566189), mRNA
          Length = 3042

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 86  gactatacagccaaacacag 105
           ||||||||||||||||||||
Sbjct: 886 gactatacagccaaacacag 905
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>emb|BX088525.4| Zebrafish DNA sequence from clone DKEYP-51F8 in linkage group 10,
            complete sequence
          Length = 212133

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 86   gactatacagccaaacacag 105
            ||||||||||||||||||||
Sbjct: 1135 gactatacagccaaacacag 1116
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>emb|AL928892.6| Zebrafish DNA sequence from clone DKEY-216E6, complete sequence
          Length = 179437

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 86    gactatacagccaaacacag 105
             ||||||||||||||||||||
Sbjct: 10063 gactatacagccaaacacag 10082
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>gb|AC111039.13| Mus musculus chromosome 5, clone RP24-463M5, complete sequence
          Length = 141949

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 160   tacatttttctcagttctaa 179
             ||||||||||||||||||||
Sbjct: 23198 tacatttttctcagttctaa 23217
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>emb|CT010449.10| Mouse DNA sequence from clone RP23-347O24 on chromosome 12, complete
              sequence
          Length = 203697

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 148    acctaacatttgtacatttt 167
              ||||||||||||||||||||
Sbjct: 197589 acctaacatttgtacatttt 197608
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>gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome
          Length = 2519802

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 138     ccttaatcacacctaacatt 157
               ||||||||||||||||||||
Sbjct: 1778694 ccttaatcacacctaacatt 1778713
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>gb|AC135119.4| Mus musculus BAC clone RP24-535H19 from 14, complete sequence
          Length = 179520

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 287   gtatcacatccatgtctgaa 306
             ||||||||||||||||||||
Sbjct: 78793 gtatcacatccatgtctgaa 78774
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>dbj|AP006113.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT45A24, TM0197,
            complete sequence
          Length = 112846

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 461  ccttgatgtatccttctttt 480
            ||||||||||||||||||||
Sbjct: 6381 ccttgatgtatccttctttt 6400
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>dbj|AP004946.1| Lotus japonicus genomic DNA, chromosome , clone:LjT34D11, TM0119,
             complete sequence
          Length = 109743

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 461   ccttgatgtatccttctttt 480
             ||||||||||||||||||||
Sbjct: 56441 ccttgatgtatccttctttt 56422
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>gb|AC171336.3| Mus musculus  BAC RP24-286O17 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 164528

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 154   catttgtacatttttctcag 173
             ||||||||||||||||||||
Sbjct: 22060 catttgtacatttttctcag 22041


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,668,174
Number of Sequences: 3902068
Number of extensions: 4668174
Number of successful extensions: 109806
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 109627
Number of HSP's gapped (non-prelim): 175
length of query: 496
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 474
effective length of database: 17,147,199,772
effective search space: 8127772691928
effective search space used: 8127772691928
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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